Literature DB >> 24062263

Influence of small RNAs on biofilm formation process in bacteria.

Mohammad Ali Ghaz-Jahanian1, Fatemeh Khodaparastan, Aydin Berenjian, Hoda Jafarizadeh-Malmiri.   

Abstract

Small non-coding RNAs (sRNAs) play a significant role in regulation of bacterial physiological behaviors. After sensing any environmental cue such as fluctuation of nutrient concentration, temperature, pH, and osmolarity, these sRNAs interfere to transmit these signals to target regulators and genes. sRNAs have key role in biofilm formation process by base pairing with target mRNAs or interaction with modulating proteins to both positive and negative regulation mechanisms. There are various regulatory systems to characterize the initiation and formation of special bacterial biofilms that are mostly described as two component systems based on sRNAs functions. In this study, regulatory pathways that are important for biofilm formation and genetic responses to environmental stimuli in mature biofilms were evaluated. Some of the regulatory systems that produce common types of biofilms such as curli, PGA, cellulose and polysaccharides such as alginate, colonic acid, Psl and their involved sRNAs functions were also discussed.

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Year:  2013        PMID: 24062263     DOI: 10.1007/s12033-013-9700-6

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  53 in total

1.  Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis.

Authors:  Erik Holmqvist; Johan Reimegård; Maaike Sterk; Nina Grantcharova; Ute Römling; Eduard Gerhart Heinrich Wagner
Journal:  EMBO J       Date:  2010-04-20       Impact factor: 11.598

Review 2.  The role of small RNAs in quorum sensing.

Authors:  Michal Bejerano-Sagie; Karina Bivar Xavier
Journal:  Curr Opin Microbiol       Date:  2007-03-26       Impact factor: 7.934

3.  Hierarchical involvement of various GGDEF domain proteins in rdar morphotype development of Salmonella enterica serovar Typhimurium.

Authors:  Abdul Kader; Roger Simm; Ulrich Gerstel; Michael Morr; Ute Römling
Journal:  Mol Microbiol       Date:  2006-05       Impact factor: 3.501

Review 4.  Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects.

Authors:  Francis Repoila; Fabien Darfeuille
Journal:  Biol Cell       Date:  2009-02       Impact factor: 4.458

Review 5.  Regulation by small RNAs in bacteria: expanding frontiers.

Authors:  Gisela Storz; Jörg Vogel; Karen M Wassarman
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 6.  Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems.

Authors:  Tony Romeo; Christopher A Vakulskas; Paul Babitzke
Journal:  Environ Microbiol       Date:  2012-06-05       Impact factor: 5.491

Review 7.  Escherichia coli biofilms.

Authors:  C Beloin; A Roux; J M Ghigo
Journal:  Curr Top Microbiol Immunol       Date:  2008       Impact factor: 4.291

8.  Rapid binding and release of Hfq from ternary complexes during RNA annealing.

Authors:  Julia F Hopkins; Subrata Panja; Sarah A Woodson
Journal:  Nucleic Acids Res       Date:  2011-03-04       Impact factor: 16.971

9.  Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing.

Authors:  Wonseok Hwang; Véronique Arluison; Sungchul Hohng
Journal:  Nucleic Acids Res       Date:  2011-02-27       Impact factor: 16.971

10.  Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets.

Authors:  Yi Shao; Bonnie L Bassler
Journal:  Mol Microbiol       Date:  2012-01-09       Impact factor: 3.501

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  9 in total

Review 1.  Self-Healing Concrete as a Prospective Construction Material: A Review.

Authors:  Mugahed Amran; Ali M Onaizi; Roman Fediuk; Nikolai Ivanovicn Vatin; Raizal Saifulnaz Muhammad Rashid; Hakim Abdelgader; Togay Ozbakkaloglu
Journal:  Materials (Basel)       Date:  2022-04-29       Impact factor: 3.748

Review 2.  Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies.

Authors:  Jochen Schmid; Volker Sieber; Bernd Rehm
Journal:  Front Microbiol       Date:  2015-05-26       Impact factor: 5.640

Review 3.  Non-coding RNA regulation in pathogenic bacteria located inside eukaryotic cells.

Authors:  Alvaro D Ortega; Juan J Quereda; M Graciela Pucciarelli; Francisco García-del Portillo
Journal:  Front Cell Infect Microbiol       Date:  2014-11-12       Impact factor: 5.293

4.  Escherichia coli O157:H7 Acid Sensitivity Correlates with Flocculation Phenotype during Nutrient Limitation.

Authors:  Kathryn L Kay; Frederick Breidt; Pina M Fratamico; Gian M Baranzoni; Gwang-Hee Kim; Amy M Grunden; Deog-Hwan Oh
Journal:  Front Microbiol       Date:  2017-07-26       Impact factor: 5.640

5.  A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius.

Authors:  Alvaro Orell; Vanessa Tripp; Victor Aliaga-Tobar; Sonja-Verena Albers; Vinicius Maracaja-Coutinho; Lennart Randau
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

6.  Small noncoding RNA sRNA0426 is involved in regulating biofilm formation in Streptococcus mutans.

Authors:  Luoping Yin; Wenhui Zhu; Dongru Chen; Yan Zhou; Huancai Lin
Journal:  Microbiologyopen       Date:  2020-07-06       Impact factor: 3.139

Review 7.  Opportunities and challenges for the development of polymer-based biomaterials and medical devices.

Authors:  Jinghua Yin; Shifang Luan
Journal:  Regen Biomater       Date:  2016-03-08

8.  Global assessment of small RNAs reveals a non-coding transcript involved in biofilm formation and attachment in Acinetobacter baumannii ATCC 17978.

Authors:  Laura Álvarez-Fraga; Soraya Rumbo-Feal; Astrid Pérez; Manuel J Gómez; Carmen Gayoso; Juan A Vallejo; Emily J Ohneck; Jaione Valle; Luis A Actis; Alejandro Beceiro; Germán Bou; Margarita Poza
Journal:  PLoS One       Date:  2017-08-01       Impact factor: 3.240

9.  Core non-coding RNAs of Piscirickettsia salmonis.

Authors:  Cristopher Segovia; Raul Arias-Carrasco; Alejandro J Yañez; Vinicius Maracaja-Coutinho; Javier Santander
Journal:  PLoS One       Date:  2018-05-16       Impact factor: 3.240

  9 in total

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