| Literature DB >> 24058403 |
Lulin Huang1, Yi Shi, Fang Lu, Hong Zheng, Xiaoqi Liu, Bo Gong, Jiyun Yang, Ying Lin, Jing Cheng, Shi Ma, He Lin, Zhenglin Yang.
Abstract
BACKGROUND: Kashin-Beck disease is a kind of degenerative osteoarthropathy. Genetic factors may play an important role in the pathogenesis of KBD.Entities:
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Year: 2013 PMID: 24058403 PMCID: PMC3751926 DOI: 10.1371/journal.pone.0071411
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Clinical features of KBD patients.
A. A female KBD patient with her knee, ankle and toe joints deformity, the arrows show multiple joints of this patient are affected. B. A male KBD patient with his fingers joints deformity. C. The X-ray picture of a KBD patient's hand.
Characteristics of the KBD cases and controls.
| Characteristics | Cases(n = 638) | Controls(n = 324) |
| Age, mean ± SD | 53.3±13.07 | 54.5±15.81 |
| Sex, male/female | 244/394 | 157/167 |
| Degree | ||
| I | 241 | – |
| II | 336 | – |
| III | 60 | – |
| IV | 1 | – |
Conditions used for genotyping assays.
| SNPs | Primers | Ta(°C) |
| GPX1(rs1050450) | FW:CGCCAAGAACGAAGAGATTC | 58 |
| missense CCC⇒ CTC Pro200Leu | RV:CTGACACCCGGCACTTTATT | |
| S30-C/T:CTGACATCGAAGCCCTGCTGTCTCAAGGGC | ||
| SV40-A/G:CCAAGCAGCCGGGGTAGGAGGGGCGCCCTAGGCACAGCTG | ||
| GPX1(rs1800668) | FW:ACAGGAGAGGAGGGCTGTTT | 63.5 |
| UTR-5 C/T | RV:AGAAGGCATACACCGACTGG | |
| S60-C/T:CCTGTGCCACGTGACCCGCCGCCGGCCAGTTAAAAGGAGGCGCCTGCTGGCCTCCCCTTA | ||
| GPX1(rs3811699) | FW:AGGACTTCCTGGCCTAGCTC | 63.3 |
| nearGene-5 C/T | RV:CCAGAGGGATCTAGGCTTCC | |
| S50C/T:GCCAAGGAAACGCTGCCGGAGTCCTCCCTCCCTGGCCTCCTCAGGCTGCA | ||
| DIO2(rs225014) | FW:TCGTGAAAGGAGGTCAAGT | 58 |
| missense C/T ACA⇒ GCA Thr92Ala;Thr128Ala | RV:GTGGCAATGTGTTTAATGTG | |
| S50-C/T:CTCAGCTATCTTCTCCTGGGTACCATTGCCACTGTTGTCACCTCCTTCTG | ||
| TrxR2(rs5748469) | FW:TCCCAAAGTGCTGTGAGT | 58 |
| missense A/C GCC⇒ TCC Ala66Ser | RV:ACCTGCTGCTCTCCTTATC | |
| S40-A/C:TGCCTACCTTGGGGAGAAGGTTCCACGTAGTCCACCACGG |
Genotype and allele frequencies of polymorphisms across selenoprotein genes in Tibetan.
| SNPs | Controls | KBD | Trend | ||
| number | Freq | number | Freq. | p-value(OR) | |
| GPX1(rs1050450) | 0.1031(0.74) | ||||
| CC | 271 | 0.836 | 559 | 0.876 | |
| CT | 53 | 0.164 | 79 | 0.124 | |
| TT | 0 | 0 | 0 | 0 | |
| C-allele | 595 | 0.918 | 1197 | 0.938 | |
| T-allele | 53 | 0.082 | 7 | 0.062 | |
|
| 0.1089 | 0.0956 | |||
| GPX1(rs1800668) | 0.7614(1.06) | ||||
| CC | 183 | 0.806 | 197 | 0.804 | |
| CT | 40 | 0.176 | 41 | 0.167 | |
| TT | 4 | 0.018 | 7 | 0.029 | |
| C-allele | 406 | 0.894 | 435 | 0.883 | |
| T-allele | 48 | 0.106 | 55 | 0.112 | |
|
| 0.3046 | 0.012 | |||
| GPX1(rs3811699) | 0.8351(0.95) | ||||
| TT | 202 | 0.838 | 212 | 0.841 | |
| CT | 35 | 0.145 | 37 | 0.147 | |
| CC | 4 | 0.017 | 3 | 0.012 | |
| T-allele | 439 | 0.911 | 461 | 0.915 | |
| C-allele | 43 | 0.089 | 43 | 0.085 | |
|
| 0.0988 | 0.3467 | |||
| DIO2(rs225014) | 0.7287(1.04) | ||||
| TT | 94 | 0.388 | 158 | 0.356 | |
| CT | 113 | 0.467 | 228 | 0.514 | |
| CC | 35 | 0.145 | 58 | 0.131 | |
| T-allele | 301 | 0.622 | 544 | 0.613 | |
| C-allele | 183 | 0.378 | 344 | 0.387 | |
|
| 0.9121 | 0.0844 | |||
| TrxR2(rs5748469) | 0.4426(0.86) | ||||
| AA | 137 | 0.714 | 209 | 0.749 | |
| AC | 50 | 0.26 | 63 | 0.226 | |
| CC | 5 | 0.026 | 7 | 0.025 | |
| A-allele | 324 | 0.844 | 481 | 0.882 | |
| C-allele | 60 | 0.156 | 77 | 0.138 | |
|
| 0.8642 | 0.3958 | |||
The haplotype association of gpx1 with KBD in this study.
| Haplotype | Frequencies | Chi Square | P value | Odds ratio (95% CI) |
| TCC | 0.848 | 4.132 | 0.0421 | 0.69(0.49–0.98) |
| CTT | 0.06 | 0.222 | 0.6376 | 1.14(0.67–1.91) |
| TTC | 0.032 | 12.183 | 5.00E-04 | 0.22(0.088–0.553) |
| CCT | 0.022 | 0.436 | 0.5092 | 1.34(0.57–3.14) |
| TCT | 0.016 | 0.296 | 0.5861 | 1.32(0.49–3.57) |
| TTT | 0.015 | 7.371 | 0.0066 | 0.15(0.03–0.724) |
Genotype and allele frequencies of polymorphisms across selenoprotein genes by serum iodine concentration in Tibetan population.
| SNPs | Controls | KBD | Controls | KBD | Trend | Higher group | Lower group | Higher group | Lower group | Trend |
| number | number | Freq. | Freq. | p-value | number | number | Freq. | Freq. | p-value | |
| GPX1(rs1050450) | 0.9129 | *0.02726 | ||||||||
| CC | 146 | 155 | 0.811 | 0.816 | 154 | 147 | 0.77 | 0.865 | ||
| CT | 34 | 35 | 0.189 | 0.184 | 46 | 23 | 0.23 | 0.135 | ||
| TT | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||
| C-allele | 326 | 345 | 0.906 | 0.908 | 354 | 317 | 0.885 | 0.932 | ||
| T-allele | 34 | 35 | 0.094 | 0.092 | 46 | 23 | 0.115 | 0.068 | ||
|
| 0.1617 | 0.162 | 0.0661 | 0.14013 | 0.3441 | |||||
| GPX1(rs1800668) | 0.1401 | 0.3982 | ||||||||
| CC | 205 | 207 | 0.804 | 0.881 | 187 | 181 | 0.379 | 0.823 | ||
| CT | 49 | 22 | 0.192 | 0.094 | 48 | 33 | 0.2 | 0.15 | ||
| TT | 1 | 6 | 0.004 | 0.026 | 5 | 6 | 0.021 | 0.027 | ||
| C-allele | 459 | 436 | 0.9 | 0.928 | 422 | 395 | 0.879 | 0.898 | ||
| T-allele | 51 | 34 | 0.1 | 0.072 | 58 | 45 | 0.121 | 0.102 | ||
|
| 0.2808 | 0 | 0.3634 | 0.0066 | ||||||
| GPX1(rs3811699) | 0.8763 | 0.14013 | ||||||||
| TT | 200 | 212 | 0.84 | 0.841 | 205 | 207 | 0.804 | 0.881 | ||
| CT | 34 | 37 | 0.143 | 0.147 | 49 | 22 | 0.192 | 0.094 | ||
| CC | 4 | 3 | 0.017 | 0.012 | 1 | 6 | 0.004 | 0.026 | ||
| T-allele | 434 | 461 | 0.912 | 0.915 | 459 | 436 | 0.9 | 0.928 | ||
| C-allele | 42 | 43 | 0.088 | 0.085 | 51 | 34 | 0.1 | 0.072 | ||
|
| 0.08364 | 0.3467 | 0.2808 | 0 | ||||||
| DIO2(rs225014) | 0.6574 | 0.4836 | ||||||||
| TT | 170 | 175 | 0.73 | 0.742 | 70 | 81 | 0.348 | 0.382 | ||
| CT | 56 | 56 | 0.24 | 0.237 | 105 | 106 | 0.522 | 0.5 | ||
| CC | 7 | 5 | 0.03 | 0.021 | 26 | 25 | 0.129 | 0.118 | ||
| T-allele | 396 | 406 | 0.85 | 0.86 | 245 | 268 | 0.609 | 0.632 | ||
| C-allele | 70 | 66 | 0.15 | 0.14 | 157 | 158 | 0.391 | 0.368 | ||
|
| 0.3712 | 0.8347 | 0.16748 | 0.2748 | ||||||
| TrxR2(rs5748469) | 0.4689 | 0.6574 | ||||||||
| AA | 136 | 209 | 0.716 | 0.749 | 170 | 175 | 0.73 | 0.742 | ||
| AC | 49 | 63 | 0.258 | 0.226 | 56 | 56 | 0.24 | 0.237 | ||
| CC | 5 | 7 | 0.026 | 0.025 | 7 | 5 | 0.03 | 0.021 | ||
| A-allele | 321 | 481 | 0.845 | 0.862 | 396 | 406 | 0.85 | 0.86 | ||
| C-allele | 59 | 77 | 0.155 | 0.138 | 70 | 66 | 0.15 | 0.14 | ||
|
| 0.8164 | 0.3958 | 0.3712 | 0.8347 |
Genotype and allele frequencies of polymorphisms across selenoprotein genes by serum selenium concentration in Tibetan population.
| SNPs | Controls | KBD | Controls | KBD | Trend | Higher group | Lower group | Higher group | Lower group | Trend |
| number | number | Freq. | Freq. | p-value | number | number | Freq. | Freq. | p-value | |
| GPX1(rs1050450) | 0.932 | 0.2849 | ||||||||
| CC | 147 | 155 | 0.812 | 0.816 | 174 | 125 | 0.798 | 0.839 | ||
| CT | 34 | 35 | 0.188 | 0.184 | 44 | 24 | 0.202 | 0.161 | ||
| TT | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||
| C-allele | 328 | 345 | 0.906 | 0.908 | 392 | 274 | 0.899 | 0.919 | ||
| T-allele | 34 | 35 | 0.094 | 0.092 | 44 | 24 | 0.101 | 0.081 | ||
|
| 0.1631 | 0.162 | 0.2849 | 0.0975 | ||||||
| GPX1(rs1800668) | 0.701 | 0.924 | ||||||||
| CC | 182 | 197 | 0.809 | 0.804 | 173 | 206 | 0.797 | 0.811 | ||
| CT | 39 | 41 | 0.173 | 0.167 | 41 | 40 | 0.189 | 0.157 | ||
| TT | 4 | 7 | 0.018 | 0.029 | 3 | 8 | 0.014 | 0.031 | ||
| C-allele | 403 | 435 | 0.896 | 0.888 | 387 | 452 | 0.892 | 0.89 | ||
| T-allele | 47 | 55 | 0.104 | 0.112 | 47 | 56 | 0.108 | 0.11 | ||
|
| 0.2706 | 0.0121 | 0.749 | 0.002 | ||||||
| GPX1(rs3811699) | 0.887 | 0.8969 | ||||||||
| TT | 201 | 212 | 0.841 | 0.841 | 185 | 228 | 0.833 | 0.848 | ||
| CT | 34 | 37 | 0.142 | 0.147 | 35 | 36 | 0.158 | 0.134 | ||
| CC | 4 | 3 | 0.017 | 0.012 | 2 | 5 | 0.009 | 0.019 | ||
| T-allele | 436 | 461 | 0.912 | 0.915 | 405 | 492 | 0.912 | 0.914 | ||
| C-allele | 42 | 43 | 0.088 | 0.085 | 39 | 46 | 0.088 | 0.086 | ||
|
| 0.082 | 0.347 | 0.018 | 0.8099 | ||||||
| DIO2(rs225014) | 0.19 | 0.6357 | ||||||||
| TT | 57 | 94 | 0.425 | 0.337 | 63 | 88 | 0.389 | 0.351 | ||
| CT | 61 | 150 | 0.455 | 0.538 | 72 | 139 | 0.444 | 0.554 | ||
| CC | 16 | 35 | 0.119 | 0.125 | 27 | 24 | 0.167 | 0.096 | ||
| T-allele | 175 | 338 | 0.653 | 0.606 | 198 | 315 | 0.611 | 0.627 | ||
| C-allele | 93 | 220 | 0.347 | 0.394 | 126 | 502 | 0.389 | 0.373 | ||
|
| 0.9585 | 0.0359 | 0.0035 | 0.4085 | ||||||
| TrxR2(rs5748469) | 0.461 | 0.6092 | ||||||||
| AA | 136 | 209 | 0.716 | 0.749 | 154 | 191 | 0.748 | 0.726 | ||
| AC | 49 | 63 | 0.258 | 0.226 | 47 | 65 | 0.228 | 0.247 | ||
| CC | 5 | 7 | 0.026 | 0.025 | 5 | 7 | 0.024 | 0.027 | ||
| A-allele | 321 | 481 | 0.845 | 0.862 | 355 | 447 | 0.862 | 0.85 | ||
| C-allele | 59 | 77 | 0.155 | 0.138 | 57 | 79 | 0.138 | 0.15 | ||
|
| 0.8164 | 0.3958 | 0.5367 | 0.606 |
Statistical Power Calculations for a Paired t Test and Their Effect on Desired Sample Size.
| iodine(case/control) | selenium(case/control) | iodine(high/low) | selenium(high/low) | |
| α | 0.05 | 0.05 | 0.05 | 0.05 |
| 1-β | 0.8 | 0.8 | 0.8 | 0.8 |
| n | 90 | 1337 | 3 | 56 |
α, (alpha)the threshold value below which statistical significance will be declared.
1-β, (one minus beta) the statistical power.
n, the sample size.
Figure 2Iodine and GPXs involved in Thyroid Hormones Biosynthesis.
The serum sodium iodide is transported into the thyrocyte and then iodine is incorporated into the thyroglobulin molecule (Tg) in a reaction catalyzed by the hemoprotein thyroid peroxidase (TPO). In this reaction, H2O2 generated by the NADPH-dependent thyroxidase (ThOx) is required as substrate by TPO for the iodination and coupling of tyrosyl residues in Tg. Then, thyroid hormones triiodothyronine (T3) and tetraiodothyronine (T4) are released into the bloodstream. H2O2 used in this reaction decreases the amount of H2O2 that would otherwise be available for damaging oxidation reactions. Selenium-dependent glutathione peroxidase 1 (GPX 1) and other GPX s remove H2O2 from the tissues, also decreasing oxidative damage. (Modified from: J. Köhrle et al. Selenium, the thyroid, and the endocrine system. Endocrine Reviews, December 2005, 26(7):944–984; Lyn Patrick, ND. Iodine: deficiency and therapeutic considerations. Alternative Medicine Review, 2008, 13(2):116–127).