Literature DB >> 2405386

Identification of essential histidine residues in the active site of Escherichia coli xylose (glucose) isomerase.

C A Batt1, A C Jamieson, M A Vandeyar.   

Abstract

Two conserved histidine residues (His-101 and His-271) appear to be essential components in the active site of the enzyme xylose (glucose) isomerase (EC 5.3.1.5). These amino acid residues were targeted for mutagenesis on the basis of sequence homology among xylose isomerases isolated from Escherichia coli, Bacillus subtilis, Ampullariella sp. strain 3876, and Streptomyces violaceus-niger. Each residue was selectively replaced by site-directed mutagenesis and shown to be essential for activity. No measurable activity was observed for any mutations replacing either His-101 or His-271. Circular dichroism measurements revealed no significant change in the overall conformation of the mutant enzymes, and all formed dimers similar to the wild-type enzyme. Mutations at His-271 could be distinguished from those at His-101, since the former resulted in a thermolabile protein whereas no significant change in heat stability was observed for the latter. Based upon these results and structural data recently reported, we speculate that His-101 is the catalytic base mediating the reaction. Replacement of His-271 may render the enzyme thermolabile, since this residue appears to be a ligand for one of the metal ions in the active site of the enzyme.

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Year:  1990        PMID: 2405386      PMCID: PMC53316          DOI: 10.1073/pnas.87.2.618

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  A simple and rapid method for the selection of oligodeoxynucleotide-directed mutants.

Authors:  M A Vandeyar; M P Weiner; C J Hutton; C A Batt
Journal:  Gene       Date:  1988-05-15       Impact factor: 3.688

2.  X-ray Laue diffraction from crystals of xylose isomerase.

Authors:  G K Farber; P Machin; S C Almo; G A Petsko; J Hajdu
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

3.  Crystal structure of enolase indicates that enolase and pyruvate kinase evolved from a common ancestor.

Authors:  L Lebioda; B Stec
Journal:  Nature       Date:  1988-06-16       Impact factor: 49.962

4.  Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors.

Authors:  M J Zoller; M Smith
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

5.  New M13 vectors for cloning.

Authors:  J Messing
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

6.  X-ray crystal structure of D-xylose isomerase at 4-A resolution.

Authors:  H L Carrell; B H Rubin; T J Hurley; J P Glusker
Journal:  J Biol Chem       Date:  1984-03-10       Impact factor: 5.157

7.  Sequence of the Ampullariella sp. strain 3876 gene coding for xylose isomerase.

Authors:  G C Saari; A A Kumar; G H Kawasaki; M Y Insley; P J O'Hara
Journal:  J Bacteriol       Date:  1987-02       Impact factor: 3.490

8.  Xylose isomerase from Escherichia coli. Characterization of the protein and the structural gene.

Authors:  G D Schellenberg; A Sarthy; A E Larson; M P Backer; J W Crabb; M Lidstrom; B D Hall; C E Furlong
Journal:  J Biol Chem       Date:  1984-06-10       Impact factor: 5.157

9.  Nucleotide sequence of the Bacillus subtilis xylose isomerase gene: extensive homology between the Bacillus and Escherichia coli enzyme.

Authors:  M Wilhelm; C P Hollenberg
Journal:  Nucleic Acids Res       Date:  1985-08-12       Impact factor: 16.971

10.  Reaction energetics of a mutant triosephosphate isomerase in which the active-site glutamate has been changed to aspartate.

Authors:  R T Raines; E L Sutton; D R Straus; W Gilbert; J R Knowles
Journal:  Biochemistry       Date:  1986-11-04       Impact factor: 3.162

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  10 in total

1.  D-xylose isomerase from a marine bacterium, Vibrio sp. strain XY-214, and D-xylulose production from β-1,3-xylan.

Authors:  Yoshiaki Umemoto; Toshiyuki Shibata; Toshiyoshi Araki
Journal:  Mar Biotechnol (NY)       Date:  2011-04-26       Impact factor: 3.619

2.  Thermotoga neapolitana homotetrameric xylose isomerase is expressed as a catalytically active and thermostable dimer in Escherichia coli.

Authors:  J M Hess; V Tchernajenko; C Vieille; J G Zeikus; R M Kelly
Journal:  Appl Environ Microbiol       Date:  1998-07       Impact factor: 4.792

3.  Organization and characterization of three genes involved in D-xylose catabolism in Lactobacillus pentosus.

Authors:  B C Lokman; P van Santen; J C Verdoes; J Krüse; R J Leer; M Posno; P H Pouwels
Journal:  Mol Gen Genet       Date:  1991-11

4.  Engineered glucose isomerase from Streptomyces sp. SK is resistant to Ca²⁺ inhibition and Co²⁺ independent.

Authors:  Hajer Ben Hlima; Nushin Aghajari; Mamdouh Ben Ali; Richard Haser; Samir Bejar
Journal:  J Ind Microbiol Biotechnol       Date:  2011-12-04       Impact factor: 3.346

Review 5.  Molecular and industrial aspects of glucose isomerase.

Authors:  S H Bhosale; M B Rao; V V Deshpande
Journal:  Microbiol Rev       Date:  1996-06

6.  Restoration of a defective Lactococcus lactis xylose isomerase.

Authors:  Joo-Heon Park; Carl A Batt
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

7.  Molecular cloning, structure, promoters and regulatory elements for transcription of the Bacillus licheniformis encoded regulon for xylose utilization.

Authors:  A Scheler; T Rygus; R Allmansberger; W Hillen
Journal:  Arch Microbiol       Date:  1991       Impact factor: 2.552

Review 8.  Functions of the gene products of Escherichia coli.

Authors:  M Riley
Journal:  Microbiol Rev       Date:  1993-12

9.  Cloning and expression of the genes for xylose isomerase and xylulokinase from Klebsiella pneumoniae 1033 in Escherichia coli K12.

Authors:  S D Feldmann; H Sahm; G A Sprenger
Journal:  Mol Gen Genet       Date:  1992-08

10.  Identification of a Novel Cobamide Remodeling Enzyme in the Beneficial Human Gut Bacterium Akkermansia muciniphila.

Authors:  Kenny C Mok; Olga M Sokolovskaya; Alexa M Nicolas; Zachary F Hallberg; Adam Deutschbauer; Hans K Carlson; Michiko E Taga
Journal:  mBio       Date:  2020-12-08       Impact factor: 7.867

  10 in total

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