Literature DB >> 24046719

(E)-N'-(4-Meth-oxy-benzyl-idene)pyridine-3-carbohydrazide dihydrate.

J Josephine Novina1, G Vasuki, M Suresh, M Syed Ali Padusha.   

Abstract

In the title compound, C14H13N3O2·2H2O, the hydrazone mol-ecule adopts an E conformation with respect to the C=N bond. The dihedral angle between the benzene and pyridine rings is 8.55 (10)°. The methyl-idene-hydrazide [-C(=O)-N-N=C-] fragment is essentially planar, with a maximum deviation of 0.0375 (13) Å. The mean planes of the benzene and pyridine rings make dihedral angles of 2.71 (14) and 11.25 (13)°, respectively, with mean plane of the methyl-idene-hydrazide fragment. In the crystal, the benzohydrazide and water mol-ecules are linked by N-H⋯O, O-H⋯O and O-H⋯N hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2013        PMID: 24046719      PMCID: PMC3770434          DOI: 10.1107/S1600536813017406

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of benzohydrazides, see: Hai-Yun (2011 ▶); Havanur et al. (2010 ▶); Parashar et al. (2009 ▶). For details of the ability of benzohydrazone compounds to inhibit cell growth and DNA synthesis, see: Ambwani et al. (2011 ▶); Despaigne et al. (2010 ▶); Havanur et al. (2010 ▶). For background to the use of benzohydrazides as catalysts, see: Seleem et al. (2011 ▶); Singh & Raghav (2011 ▶). For related structures, see: Ahmad et al. (2010 ▶); Hu & Liu (2012 ▶); Shi & Li (2012 ▶).

Experimental

Crystal data

C14H13N3O2·2H2O M = 291.31 Monoclinic, a = 7.6534 (6) Å b = 16.3503 (11) Å c = 11.4887 (6) Å β = 96.889 (2)° V = 1427.26 (17) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.970, T max = 0.980 11391 measured reflections 3449 independent reflections 2050 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.155 S = 0.93 3449 reflections 206 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813017406/sj5336sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813017406/sj5336Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813017406/sj5336Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13N3O2·2H2OF(000) = 616
Mr = 291.31Dx = 1.356 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2772 reflections
a = 7.6534 (6) Åθ = 5.0–49.6°
b = 16.3503 (11) ŵ = 0.10 mm1
c = 11.4887 (6) ÅT = 296 K
β = 96.889 (2)°Block, colorless
V = 1427.26 (17) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3449 independent reflections
Radiation source: fine-focus sealed tube2050 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω and φ scanθmax = 28.2°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −6→10
Tmin = 0.970, Tmax = 0.980k = −21→21
11391 measured reflectionsl = −13→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.155w = 1/[σ2(Fo2) + (0.0961P)2] where P = (Fo2 + 2Fc2)/3
S = 0.93(Δ/σ)max = 0.001
3449 reflectionsΔρmax = 0.21 e Å3
206 parametersΔρmin = −0.17 e Å3
6 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.009 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1W−0.21558 (17)0.92875 (9)0.70457 (12)0.0661 (4)
O10.21045 (18)1.39338 (7)0.86316 (12)0.0652 (4)
O2W0.4378 (2)1.01711 (9)1.14079 (13)0.0670 (4)
N10.15479 (18)1.00258 (8)0.89482 (11)0.0459 (4)
N20.09417 (18)0.92297 (7)0.87676 (11)0.0449 (4)
H2N20.00610.91210.82530.054*
N30.1583 (2)0.63790 (8)0.97900 (12)0.0530 (4)
O20.29733 (18)0.87747 (7)1.01980 (11)0.0688 (5)
C10.3384 (3)1.42723 (12)0.9485 (2)0.0717 (6)
H1A0.30711.41581.02530.108*
H1B0.34381.48530.93750.108*
H1C0.45121.40350.94080.108*
C20.1867 (2)1.31049 (10)0.86152 (14)0.0470 (4)
C30.2804 (2)1.25610 (10)0.93809 (15)0.0477 (4)
H30.36711.27530.99520.057*
C40.2445 (2)1.17334 (10)0.92929 (14)0.0460 (4)
H40.30801.13720.98060.055*
C50.1152 (2)1.14332 (9)0.84510 (13)0.0413 (4)
C80.0684 (2)1.05745 (10)0.83445 (14)0.0450 (4)
H8−0.02781.04210.78180.054*
C90.1777 (2)0.86340 (9)0.94232 (13)0.0422 (4)
C100.1187 (2)0.77765 (9)0.91597 (13)0.0384 (4)
C140.1898 (2)0.71787 (10)0.99233 (13)0.0467 (4)
H140.26500.73451.05770.056*
C130.0525 (2)0.61574 (10)0.88326 (15)0.0520 (5)
H130.03030.56030.87080.062*
C60.0240 (2)1.19971 (10)0.76869 (14)0.0482 (4)
H6−0.06291.18090.71140.058*
C70.0592 (2)1.28169 (10)0.77585 (15)0.0509 (4)
H7−0.00221.31780.72340.061*
C12−0.0253 (2)0.67021 (10)0.80237 (15)0.0519 (5)
H12−0.09880.65190.73730.062*
C110.0072 (2)0.75257 (9)0.81904 (14)0.0456 (4)
H11−0.04520.79070.76580.055*
H1O1−0.266 (2)0.9158 (11)0.6408 (10)0.068*
H2O1−0.291 (2)0.9418 (13)0.7474 (13)0.068*
H2O20.389 (3)0.9826 (11)1.0949 (17)0.077 (7)*
H1O20.544 (2)1.021 (2)1.134 (3)0.149 (15)*
U11U22U33U12U13U23
O1W0.0546 (9)0.0784 (9)0.0607 (9)−0.0029 (7)−0.0121 (7)−0.0218 (7)
O10.0764 (10)0.0408 (7)0.0760 (9)−0.0070 (6)−0.0009 (8)0.0042 (6)
O2W0.0648 (10)0.0722 (9)0.0623 (9)−0.0155 (8)0.0000 (8)−0.0202 (7)
N10.0494 (8)0.0396 (7)0.0464 (8)−0.0076 (6)−0.0043 (7)−0.0017 (6)
N20.0468 (8)0.0403 (7)0.0440 (8)−0.0064 (6)−0.0088 (6)−0.0030 (6)
N30.0636 (10)0.0439 (8)0.0487 (8)−0.0001 (7)−0.0054 (7)0.0017 (6)
O20.0731 (9)0.0519 (7)0.0702 (9)−0.0125 (6)−0.0370 (8)0.0024 (6)
C10.0695 (14)0.0482 (10)0.0957 (16)−0.0127 (9)0.0025 (12)−0.0117 (10)
C20.0523 (10)0.0401 (9)0.0497 (9)−0.0011 (7)0.0111 (8)−0.0009 (7)
C30.0489 (10)0.0472 (9)0.0450 (9)−0.0052 (7)−0.0023 (8)−0.0042 (7)
C40.0500 (10)0.0418 (9)0.0439 (9)0.0017 (7)−0.0030 (8)0.0007 (7)
C50.0427 (9)0.0420 (8)0.0386 (8)−0.0005 (7)0.0022 (7)−0.0033 (6)
C80.0447 (9)0.0457 (9)0.0420 (9)−0.0029 (7)−0.0049 (7)−0.0037 (7)
C90.0428 (9)0.0436 (9)0.0383 (8)−0.0055 (7)−0.0026 (7)−0.0010 (6)
C100.0380 (8)0.0421 (8)0.0343 (8)−0.0016 (7)0.0009 (7)−0.0026 (6)
C140.0518 (10)0.0479 (9)0.0375 (9)−0.0021 (8)−0.0068 (8)−0.0020 (7)
C130.0578 (11)0.0413 (9)0.0546 (10)−0.0017 (8)−0.0021 (9)−0.0064 (7)
C60.0478 (10)0.0500 (10)0.0441 (9)0.0022 (8)−0.0062 (8)−0.0028 (7)
C70.0554 (11)0.0477 (9)0.0480 (9)0.0074 (8)−0.0003 (8)0.0046 (7)
C120.0555 (11)0.0484 (9)0.0478 (9)−0.0034 (8)−0.0100 (8)−0.0096 (8)
C110.0486 (10)0.0442 (9)0.0412 (9)0.0013 (7)−0.0068 (8)0.0003 (7)
O1W—H1O10.814 (9)C3—H30.9300
O1W—H2O10.828 (9)C4—C51.388 (2)
O1—C21.3672 (19)C4—H40.9300
O1—C11.413 (2)C5—C61.400 (2)
O2W—H2O20.830 (15)C5—C81.450 (2)
O2W—H1O20.828 (17)C8—H80.9300
N1—C81.270 (2)C9—C101.493 (2)
N1—N21.3890 (17)C10—C111.382 (2)
N2—C91.3451 (19)C10—C141.381 (2)
N2—H2N20.8600C14—H140.9300
N3—C141.335 (2)C13—C121.370 (2)
N3—C131.335 (2)C13—H130.9300
O2—C91.2199 (18)C6—C71.368 (2)
C1—H1A0.9600C6—H60.9300
C1—H1B0.9600C7—H70.9300
C1—H1C0.9600C12—C111.379 (2)
C2—C71.383 (2)C12—H120.9300
C2—C31.388 (2)C11—H110.9300
C3—C41.382 (2)
H1O1—O1W—H2O1108.4 (17)N1—C8—H8119.0
C2—O1—C1118.54 (14)C5—C8—H8119.0
H2O2—O2W—H1O2111 (2)O2—C9—N2122.46 (14)
C8—N1—N2115.97 (13)O2—C9—C10120.50 (14)
C9—N2—N1117.85 (12)N2—C9—C10117.04 (13)
C9—N2—H2N2121.1C11—C10—C14117.41 (14)
N1—N2—H2N2121.1C11—C10—C9125.79 (14)
C14—N3—C13116.33 (13)C14—C10—C9116.70 (13)
O1—C1—H1A109.5N3—C14—C10124.64 (14)
O1—C1—H1B109.5N3—C14—H14117.7
H1A—C1—H1B109.5C10—C14—H14117.7
O1—C1—H1C109.5N3—C13—C12123.60 (15)
H1A—C1—H1C109.5N3—C13—H13118.2
H1B—C1—H1C109.5C12—C13—H13118.2
O1—C2—C7115.38 (14)C7—C6—C5121.87 (14)
O1—C2—C3124.65 (14)C7—C6—H6119.1
C7—C2—C3119.97 (14)C5—C6—H6119.1
C4—C3—C2119.85 (14)C6—C7—C2119.58 (15)
C4—C3—H3120.1C6—C7—H7120.2
C2—C3—H3120.1C2—C7—H7120.2
C3—C4—C5121.08 (14)C13—C12—C11118.95 (14)
C3—C4—H4119.5C13—C12—H12120.5
C5—C4—H4119.5C11—C12—H12120.5
C4—C5—C6117.64 (14)C12—C11—C10119.05 (14)
C4—C5—C8123.31 (14)C12—C11—H11120.5
C6—C5—C8119.04 (13)C10—C11—H11120.5
N1—C8—C5122.07 (14)
D—H···AD—HH···AD···AD—H···A
N2—H2N2···O1W0.862.082.9013 (17)161
O1W—H1O1···N3i0.81 (1)2.08 (1)2.8697 (18)166 (2)
O1W—H2O1···O2Wii0.83 (1)1.93 (1)2.749 (2)171 (2)
O2W—H1O2···N1iii0.83 (2)2.40 (2)3.209 (2)166 (3)
O2W—H2O2···O20.83 (2)2.01 (2)2.8182 (17)164 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2N2⋯O1W 0.862.082.9013 (17)161
O1W—H1O1⋯N3i 0.81 (1)2.08 (1)2.8697 (18)166 (2)
O1W—H2O1⋯O2W ii 0.83 (1)1.93 (1)2.749 (2)171 (2)
O2W—H1O2⋯N1iii 0.83 (2)2.40 (2)3.209 (2)166 (3)
O2W—H2O2⋯O20.83 (2)2.01 (2)2.8182 (17)164 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Nitro-N'-[(E)-3-pyridylmethyl-idene]benzohydrazide.

Authors:  Tanveer Ahmad; Muhammad Zia-Ur-Rehman; Hamid Latif Siddiqui; Shahid Mahmud; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

3.  (E)-4-Amino-N'-(2-nitro-benzyl-idene)benzohydrazide.

Authors:  Zhong-Feng Shi; Jia-Ming Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-16

4.  (E)-4-Methyl-N'-(3-nitro-benzyl-idene)benzohydrazide.

Authors:  Hua-Nan Hu; Shi-Yong Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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  3 in total

1.  Crystal structure of (E)-3-{[2-(2,4-di-chloro-benzyl-idene)hydrazin-1-yl]carbon-yl}pyridinium chloride trihydrate.

Authors:  J Josephine Novina; G Vasuki; M Suresh; M Syed Ali Padusha
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-10

2.  Crystal structure of 3-({[(thio-phen-2-yl)methyl-idene]hydrazin-yl}carbon-yl)pyridinium chloride dihydrate.

Authors:  Thangayyah Chandrasekaran; Mani Suresh; John Josephine Novina; Mohamed Khan Syed Ali Padusha; Gopalsamy Vasuki; Balasubramani Kasthuri
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-06

3.  (E)-N'-(3,4-Di-meth-oxy-benzyl-idene)nicotinohydrazide monohydrate.

Authors:  J Josephine Novina; G Vasuki; M Suresh; M Syed Ali Padusha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-18
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