Literature DB >> 25161576

(E)-N'-(3,4-Di-meth-oxy-benzyl-idene)nicotinohydrazide monohydrate.

J Josephine Novina1, G Vasuki2, M Suresh3, M Syed Ali Padusha3.   

Abstract

In the title hydrated compound, C15H15N3O3·H2O, the nicotinohydrazide mol-ecule adopts a trans conformation with respect to the C=N double bond. The dihedral angle between the benzene and pyridine rings is 5.10 (14)°. In the crystal, the solvent water mol-ecule acts as an acceptor, forming an N-H⋯O hydrogen bond supported by two C-H⋯O contacts. It also acts as a donor, forming bifurcated O-H⋯(O,O) and O-H⋯N hydrogen bonds that combine with the former contacts to form zigzag chains of mol-ecules along the c-axis direction. An additional O-H⋯O donor contact completes a set of six hydrogen bonds to and from the water mol-ecule and connects it to a third nicotinohydrazide mol-ecule. This latter contact combines with weaker C-H⋯O hydrogen bonds supported by a C-H⋯π contact to stack mol-ecules along b in a three-dimensional network.

Entities:  

Year:  2014        PMID: 25161576      PMCID: PMC4120580          DOI: 10.1107/S1600536814013798

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of hydrazone compounds, see: Singh & Raghav (2011 ▶); Patil et al. (2011 ▶). For background to the use of nicotinohydrazides as catalysts and of their transition metal complexes in the treatment of tuberculosis, see: Torje et al. (2012 ▶). For closely related structures, see: Novina et al. (2013 ▶); Wang et al. (2010 ▶).

Experimental

Crystal data

C15H15N3O3·H2O M = 303.32 Monoclinic, a = 4.9128 (6) Å b = 25.137 (4) Å c = 12.2950 (16) Å β = 96.513 (4)° V = 1508.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.50 × 0.35 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.952, T max = 0.971 11633 measured reflections 3704 independent reflections 2250 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.141 S = 1.02 3704 reflections 209 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814013798/sj5412sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013798/sj5412Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814013798/sj5412Isup3.cml CCDC reference: 1008073 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H15N3O3·H2OF(000) = 640
Mr = 303.32Dx = 1.335 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2357 reflections
a = 4.9128 (6) Åθ = 4.7–51.8°
b = 25.137 (4) ŵ = 0.10 mm1
c = 12.2950 (16) ÅT = 296 K
β = 96.513 (4)°Block, colorless
V = 1508.6 (4) Å30.50 × 0.35 × 0.30 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3704 independent reflections
Radiation source: fine-focus sealed tube2250 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
ω and φ scanθmax = 28.3°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −6→6
Tmin = 0.952, Tmax = 0.971k = −33→33
11633 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0655P)2 + 0.1374P] where P = (Fo2 + 2Fc2)/3
3704 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.21 e Å3
3 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.8728 (4)0.00081 (9)0.12935 (17)0.0591 (6)
H1A1.7449−0.00750.06670.089*
H1B1.9736−0.03060.15310.089*
H1C1.99750.02770.11010.089*
C21.5690 (3)0.06393 (7)0.19504 (13)0.0345 (4)
C31.4107 (3)0.07841 (7)0.27937 (13)0.0349 (4)
C41.2439 (3)0.12194 (7)0.26645 (13)0.0360 (4)
H41.14020.13150.32210.043*
C51.2269 (3)0.15227 (7)0.17060 (13)0.0343 (4)
C81.0486 (3)0.19839 (7)0.15615 (13)0.0376 (4)
H81.02670.21580.08890.045*
C90.6145 (3)0.27874 (7)0.28846 (13)0.0356 (4)
C100.4296 (3)0.32458 (7)0.25774 (13)0.0358 (4)
C140.2785 (4)0.34525 (9)0.33488 (15)0.0512 (5)
H140.29560.32930.40350.061*
C130.0882 (4)0.40894 (9)0.22029 (18)0.0574 (6)
H13−0.03060.43760.20650.069*
C120.2313 (5)0.39213 (11)0.13952 (19)0.0764 (8)
H120.21320.40930.07210.092*
C110.4038 (5)0.34939 (10)0.15793 (17)0.0704 (7)
H110.50300.33730.10280.084*
C61.3787 (3)0.13702 (7)0.08749 (13)0.0396 (4)
H61.36580.15640.02270.047*
C71.5492 (3)0.09318 (7)0.10011 (13)0.0388 (4)
H71.65110.08340.04400.047*
C151.2265 (4)0.05011 (9)0.43970 (15)0.0578 (6)
H15A1.23280.08470.47300.087*
H15C1.25450.02340.49560.087*
H15B1.05100.04490.39820.087*
N10.9212 (3)0.21555 (6)0.23409 (11)0.0364 (3)
N20.7497 (3)0.25839 (6)0.20898 (10)0.0370 (3)
H2N20.73000.27170.14410.044*
N30.1091 (4)0.38654 (8)0.31852 (15)0.0637 (5)
O11.7281 (2)0.01981 (5)0.21562 (10)0.0467 (3)
O1W1.1763 (3)0.21759 (7)0.47728 (11)0.0606 (4)
O21.4351 (3)0.04615 (5)0.36928 (10)0.0496 (4)
O30.6430 (3)0.26124 (6)0.38267 (9)0.0505 (4)
H1O11.310 (4)0.2231 (12)0.440 (2)0.101 (10)*
H2O11.028 (4)0.2235 (11)0.4360 (19)0.102 (10)*
U11U22U33U12U13U23
C10.0537 (11)0.0579 (14)0.0675 (14)0.0190 (10)0.0148 (10)−0.0139 (11)
C20.0304 (8)0.0321 (9)0.0414 (9)−0.0008 (7)0.0062 (6)−0.0027 (7)
C30.0366 (8)0.0365 (10)0.0318 (8)−0.0006 (7)0.0052 (6)0.0023 (7)
C40.0401 (9)0.0401 (10)0.0291 (8)0.0058 (8)0.0094 (6)−0.0026 (7)
C50.0368 (8)0.0356 (10)0.0307 (8)0.0022 (7)0.0038 (6)−0.0009 (7)
C80.0437 (9)0.0406 (10)0.0287 (8)0.0060 (8)0.0049 (7)0.0027 (7)
C90.0381 (9)0.0392 (10)0.0297 (8)0.0015 (7)0.0052 (6)0.0002 (7)
C100.0360 (8)0.0383 (10)0.0335 (8)0.0035 (7)0.0060 (6)−0.0004 (7)
C140.0625 (12)0.0551 (13)0.0375 (10)0.0177 (10)0.0117 (8)0.0020 (9)
C130.0603 (12)0.0493 (13)0.0627 (13)0.0206 (10)0.0075 (10)0.0025 (10)
C120.0972 (17)0.0813 (18)0.0549 (13)0.0482 (15)0.0267 (12)0.0252 (12)
C110.0879 (16)0.0809 (18)0.0476 (12)0.0467 (14)0.0305 (11)0.0188 (11)
C60.0448 (9)0.0441 (11)0.0310 (8)0.0003 (8)0.0094 (7)0.0046 (8)
C70.0391 (9)0.0432 (11)0.0368 (9)0.0017 (8)0.0152 (7)−0.0038 (8)
C150.0555 (12)0.0773 (16)0.0427 (10)0.0078 (11)0.0142 (9)0.0198 (10)
N10.0409 (8)0.0367 (9)0.0313 (7)0.0080 (6)0.0023 (6)0.0011 (6)
N20.0447 (8)0.0388 (9)0.0274 (7)0.0107 (7)0.0038 (6)0.0049 (6)
N30.0736 (12)0.0635 (13)0.0565 (11)0.0278 (10)0.0180 (9)−0.0034 (9)
O10.0467 (7)0.0415 (8)0.0543 (8)0.0114 (6)0.0159 (6)0.0009 (6)
O1W0.0661 (10)0.0840 (12)0.0303 (7)−0.0146 (9)−0.0007 (7)0.0055 (7)
O20.0559 (8)0.0533 (9)0.0418 (7)0.0151 (7)0.0153 (6)0.0152 (6)
O30.0611 (8)0.0611 (9)0.0305 (6)0.0175 (7)0.0106 (5)0.0088 (6)
C1—O11.424 (2)C14—N31.331 (2)
C1—H1A0.9600C14—H140.9300
C1—H1B0.9600C13—N31.326 (3)
C1—H1C0.9600C13—C121.348 (3)
C2—O11.364 (2)C13—H130.9300
C2—C71.373 (2)C12—C111.371 (3)
C2—C31.412 (2)C12—H120.9300
C3—O21.3652 (19)C11—H110.9300
C3—C41.366 (2)C6—C71.382 (2)
C4—C51.398 (2)C6—H60.9300
C4—H40.9300C7—H70.9300
C5—C61.386 (2)C15—O21.418 (2)
C5—C81.452 (2)C15—H15A0.9600
C8—N11.277 (2)C15—H15C0.9600
C8—H80.9300C15—H15B0.9600
C9—O31.2322 (19)N1—N21.3806 (19)
C9—N21.344 (2)N2—H2N20.8600
C9—C101.489 (2)O1W—H1O10.856 (17)
C10—C111.370 (3)O1W—H2O10.854 (17)
C10—C141.371 (2)
O1—C1—H1A109.5N3—C13—C12123.02 (19)
O1—C1—H1B109.5N3—C13—H13118.5
H1A—C1—H1B109.5C12—C13—H13118.5
O1—C1—H1C109.5C13—C12—C11119.2 (2)
H1A—C1—H1C109.5C13—C12—H12120.4
H1B—C1—H1C109.5C11—C12—H12120.4
O1—C2—C7125.21 (15)C10—C11—C12119.83 (18)
O1—C2—C3115.16 (15)C10—C11—H11120.1
C7—C2—C3119.62 (15)C12—C11—H11120.1
O2—C3—C4124.52 (14)C7—C6—C5120.51 (16)
O2—C3—C2115.86 (15)C7—C6—H6119.7
C4—C3—C2119.61 (15)C5—C6—H6119.7
C3—C4—C5120.85 (15)C2—C7—C6120.38 (15)
C3—C4—H4119.6C2—C7—H7119.8
C5—C4—H4119.6C6—C7—H7119.8
C6—C5—C4119.01 (16)O2—C15—H15A109.5
C6—C5—C8119.90 (15)O2—C15—H15C109.5
C4—C5—C8121.07 (14)H15A—C15—H15C109.5
N1—C8—C5121.19 (15)O2—C15—H15B109.5
N1—C8—H8119.4H15A—C15—H15B109.5
C5—C8—H8119.4H15C—C15—H15B109.5
O3—C9—N2122.34 (16)C8—N1—N2115.72 (14)
O3—C9—C10121.05 (15)C9—N2—N1118.29 (13)
N2—C9—C10116.61 (14)C9—N2—H2N2120.9
C11—C10—C14116.41 (17)N1—N2—H2N2120.9
C11—C10—C9124.86 (16)C13—N3—C14116.83 (17)
C14—C10—C9118.70 (15)C2—O1—C1117.29 (15)
N3—C14—C10124.68 (18)H1O1—O1W—H2O1108 (2)
N3—C14—H14117.7C3—O2—C15116.70 (13)
C10—C14—H14117.7
O1—C2—C3—O2−0.8 (2)C9—C10—C11—C12−178.5 (2)
C7—C2—C3—O2177.74 (15)C13—C12—C11—C10−0.3 (4)
O1—C2—C3—C4−179.80 (15)C4—C5—C6—C7−1.4 (3)
C7—C2—C3—C4−1.3 (2)C8—C5—C6—C7−179.96 (16)
O2—C3—C4—C5−178.69 (15)O1—C2—C7—C6179.32 (15)
C2—C3—C4—C50.2 (3)C3—C2—C7—C61.0 (3)
C3—C4—C5—C61.1 (3)C5—C6—C7—C20.4 (3)
C3—C4—C5—C8179.61 (15)C5—C8—N1—N2−177.58 (14)
C6—C5—C8—N1−175.03 (16)O3—C9—N2—N11.6 (3)
C4—C5—C8—N16.5 (3)C10—C9—N2—N1−179.42 (14)
O3—C9—C10—C11174.1 (2)C8—N1—N2—C9−178.76 (15)
N2—C9—C10—C11−4.9 (3)C12—C13—N3—C14−0.8 (4)
O3—C9—C10—C14−3.7 (3)C10—C14—N3—C13−0.3 (3)
N2—C9—C10—C14177.30 (17)C7—C2—O1—C1−3.9 (3)
C11—C10—C14—N31.0 (3)C3—C2—O1—C1174.54 (15)
C9—C10—C14—N3178.98 (18)C4—C3—O2—C1516.5 (3)
N3—C13—C12—C111.1 (4)C2—C3—O2—C15−162.44 (16)
C14—C10—C11—C12−0.7 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2N2···O1Wi0.862.062.8942 (19)165
O1W—H2O1···O30.85 (2)2.15 (2)2.955 (2)157 (3)
O1W—H2O1···N10.85 (2)2.49 (2)3.1087 (19)130 (2)
C11—H11···O1Wi0.932.303.199 (3)162
C8—H8···O1Wi0.932.673.425 (2)139
O1W—H1O1···O3ii0.86 (2)2.09 (2)2.901 (2)159 (3)
C1—H1C···Cg2ii0.962.883.729 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C2–C7 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2N2⋯O1W i 0.862.062.8942 (19)165
O1W—H2O1⋯O30.85 (2)2.15 (2)2.955 (2)157 (3)
O1W—H2O1⋯N10.85 (2)2.49 (2)3.1087 (19)130 (2)
C11—H11⋯O1W i 0.932.303.199 (3)162
C8—H8⋯O1W i 0.932.673.425 (2)139
O1W—H1O1⋯O3ii 0.86 (2)2.09 (2)2.901 (2)159 (3)
C1—H1CCg2ii 0.962.883.729 (3)148

Symmetry codes: (i) ; (ii) .

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Authors:  Ping Wang; Cong Li; Yong-Qing Su
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

3.  (E)-N'-(4-Meth-oxy-benzyl-idene)pyridine-3-carbohydrazide dihydrate.

Authors:  J Josephine Novina; G Vasuki; M Suresh; M Syed Ali Padusha
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4.  Structure validation in chemical crystallography.

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1.  Crystal structure of (E)-3-{[2-(2,4-di-chloro-benzyl-idene)hydrazin-1-yl]carbon-yl}pyridinium chloride trihydrate.

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2.  Crystal structure, Hirshfeld surface analysis and HOMO-LUMO analysis of (E)-N'-(3-hy-droxy-4-meth-oxy-benzyl-idene)nicotinohydrazide monohydrate.

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3.  Crystal structure of 3-({[(thio-phen-2-yl)methyl-idene]hydrazin-yl}carbon-yl)pyridinium chloride dihydrate.

Authors:  Thangayyah Chandrasekaran; Mani Suresh; John Josephine Novina; Mohamed Khan Syed Ali Padusha; Gopalsamy Vasuki; Balasubramani Kasthuri
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