Literature DB >> 21580774

4-Nitro-N'-[(E)-3-pyridylmethyl-idene]benzohydrazide.

Tanveer Ahmad, Muhammad Zia-Ur-Rehman, Hamid Latif Siddiqui, Shahid Mahmud, Masood Parvez.   

Abstract

In the title moleclue, C(13)H(10)N(4)O(3), the methyl-idene-hydrazide [-C(=O)-N-N=C-] fragment is essentially planar, with a maximum deviation of 0.0228 (7) Å. The mean planes of the benzene and pyridine rings make dihedral angles of 25.44 (6) and 5.47 (7)°, respectively, with the mean plane of the methyl-idene-hydrazide fragment. In the crystal structure, inter-molecular N-H⋯N hydrogen bonds link mol-ecules into chains along the b axis. Additional stabilization is provided by weak inter-molecular C-H⋯O hydrogen bonds. The O atoms of the nitro group are disordered over two sets of sites of equal occupancy.

Entities:  

Year:  2010        PMID: 21580774      PMCID: PMC2983976          DOI: 10.1107/S1600536810011244

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of related compounds, see: Zia-ur-Rehman et al. (2009 ▶). For the biological activity of benzohydrazides, see: Chakraborty & Patel (1996 ▶). For closely related structures, see: Raj et al. (2008 ▶); Fun et al. (2008 ▶); Wang et al. (2008 ▶); Qiu et al. (2009 ▶).

Experimental

Crystal data

C13H10N4O3 M = 270.25 Monoclinic, a = 14.6158 (3) Å b = 8.1969 (2) Å c = 10.3645 (2) Å β = 100.609 (1)° V = 1220.49 (5) Å3 Z = 4 Cu Kα radiation μ = 0.91 mm−1 T = 123 K 0.20 × 0.16 × 0.05 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.839, T max = 0.956 10114 measured reflections 2192 independent reflections 2098 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.094 S = 1.06 2192 reflections 190 parameters 66 restraints H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011244/lh5020sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011244/lh5020Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10N4O3F(000) = 560
Mr = 270.25Dx = 1.471 Mg m3
Monoclinic, P21/cMelting point: 547 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54178 Å
a = 14.6158 (3) ÅCell parameters from 10114 reflections
b = 8.1969 (2) Åθ = 3.0–68.0°
c = 10.3645 (2) ŵ = 0.91 mm1
β = 100.609 (1)°T = 123 K
V = 1220.49 (5) Å3Plate, yellow
Z = 40.20 × 0.16 × 0.05 mm
Bruker APEXII diffractometer2192 independent reflections
Radiation source: fine-focus sealed tube2098 reflections with I > 2σ(I)
graphiteRint = 0.016
ω and φ scansθmax = 68.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −17→17
Tmin = 0.839, Tmax = 0.956k = −9→9
10114 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: difference Fourier map
wR(F2) = 0.094H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0485P)2 + 0.519P] where P = (Fo2 + 2Fc2)/3
2192 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 0.26 e Å3
66 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N1−0.0353 (11)0.277 (2)0.3850 (9)0.0354 (16)0.50
O1−0.086 (3)0.336 (5)0.295 (3)0.059 (3)0.50
O2−0.0552 (6)0.1587 (11)0.4450 (5)0.0550 (12)0.50
N1'−0.0292 (11)0.259 (2)0.4237 (9)0.0354 (16)0.50
O1'−0.082 (3)0.311 (5)0.321 (3)0.059 (3)0.50
O2'−0.0525 (6)0.1572 (11)0.4997 (5)0.0550 (12)0.50
O30.36776 (6)0.53420 (11)0.67517 (8)0.0267 (2)
N20.37145 (6)0.60961 (12)0.46461 (9)0.0179 (2)
H2N0.34420.60310.38170.022*
N30.45517 (6)0.69107 (12)0.49965 (9)0.0183 (2)
N40.66815 (7)1.02086 (12)0.31200 (10)0.0203 (2)
C10.23641 (8)0.46958 (15)0.51171 (12)0.0203 (3)
C20.17661 (9)0.52595 (17)0.40038 (13)0.0261 (3)
H20.19650.60960.34840.031*
C30.08809 (9)0.46038 (19)0.36515 (14)0.0329 (3)
H30.04660.49880.28980.040*
C40.06168 (9)0.33806 (18)0.44215 (16)0.0352 (4)
C50.11925 (10)0.27997 (17)0.55309 (16)0.0361 (4)
H50.09920.19530.60400.043*
C60.20687 (9)0.34797 (16)0.58836 (14)0.0280 (3)
H60.24720.31140.66550.034*
C70.33183 (8)0.54003 (14)0.55923 (11)0.0189 (3)
C80.48376 (8)0.75796 (14)0.40288 (11)0.0182 (3)
H80.44900.74300.31680.022*
C90.56840 (8)0.85680 (14)0.42110 (11)0.0179 (3)
C100.59341 (8)0.92553 (15)0.30967 (11)0.0191 (3)
H100.55520.90350.22700.023*
C110.72083 (8)1.05187 (15)0.42965 (12)0.0212 (3)
H110.77441.11860.43340.025*
C120.70067 (8)0.99095 (15)0.54626 (12)0.0219 (3)
H120.73951.01680.62770.026*
C130.62364 (8)0.89241 (15)0.54267 (11)0.0201 (3)
H130.60850.84970.62130.024*
U11U22U33U12U13U23
N10.0219 (18)0.035 (3)0.051 (5)−0.0047 (17)0.010 (4)−0.013 (4)
O10.027 (3)0.086 (9)0.059 (8)−0.015 (4)−0.004 (5)−0.022 (6)
O20.0311 (8)0.0435 (8)0.093 (4)−0.0147 (6)0.018 (3)0.007 (3)
N1'0.0219 (18)0.035 (3)0.051 (5)−0.0047 (17)0.010 (4)−0.013 (4)
O1'0.027 (3)0.086 (9)0.059 (8)−0.015 (4)−0.004 (5)−0.022 (6)
O2'0.0311 (8)0.0435 (8)0.093 (4)−0.0147 (6)0.018 (3)0.007 (3)
O30.0277 (5)0.0329 (5)0.0186 (4)−0.0062 (4)0.0022 (3)0.0030 (4)
N20.0158 (5)0.0208 (5)0.0168 (5)−0.0024 (4)0.0021 (4)−0.0006 (4)
N30.0156 (5)0.0187 (5)0.0205 (5)−0.0013 (4)0.0030 (4)−0.0014 (4)
N40.0184 (5)0.0215 (5)0.0215 (5)0.0005 (4)0.0053 (4)0.0010 (4)
C10.0192 (6)0.0194 (6)0.0240 (6)−0.0001 (4)0.0080 (5)−0.0052 (5)
C20.0207 (6)0.0318 (7)0.0263 (6)−0.0023 (5)0.0058 (5)−0.0034 (5)
C30.0207 (6)0.0429 (8)0.0345 (7)−0.0011 (6)0.0032 (5)−0.0121 (6)
C40.0184 (6)0.0315 (7)0.0579 (9)−0.0057 (5)0.0130 (6)−0.0211 (7)
C50.0293 (7)0.0217 (7)0.0631 (10)−0.0037 (5)0.0234 (7)−0.0006 (7)
C60.0252 (6)0.0227 (6)0.0387 (7)0.0003 (5)0.0126 (5)0.0015 (6)
C70.0197 (6)0.0167 (6)0.0206 (6)0.0005 (4)0.0045 (4)−0.0013 (5)
C80.0178 (5)0.0181 (6)0.0182 (5)0.0010 (4)0.0021 (4)−0.0005 (4)
C90.0170 (6)0.0163 (6)0.0206 (6)0.0023 (4)0.0040 (4)−0.0012 (4)
C100.0180 (6)0.0196 (6)0.0193 (6)0.0012 (4)0.0024 (4)−0.0013 (5)
C110.0161 (5)0.0207 (6)0.0271 (6)−0.0016 (4)0.0045 (5)−0.0013 (5)
C120.0198 (6)0.0235 (6)0.0212 (6)−0.0003 (5)0.0008 (5)−0.0029 (5)
C130.0208 (6)0.0210 (6)0.0191 (6)0.0016 (5)0.0050 (5)0.0004 (5)
N1—O11.19 (3)C2—H20.9500
N1—O21.213 (16)C3—C41.380 (2)
N1—C41.518 (16)C3—H30.9500
N1'—O2'1.236 (15)C4—C51.379 (2)
N1'—O1'1.27 (2)C5—C61.383 (2)
N1'—C41.460 (17)C5—H50.9500
O3—C71.2205 (15)C6—H60.9500
N2—C71.3532 (15)C8—C91.4617 (16)
N2—N31.3826 (13)C8—H80.9500
N2—H2N0.8800C9—C101.3929 (16)
N3—C81.2788 (15)C9—C131.3964 (16)
N4—C101.3397 (16)C10—H100.9500
N4—C111.3411 (16)C11—C121.3886 (17)
C1—C61.3919 (18)C11—H110.9500
C1—C21.3920 (18)C12—C131.3806 (17)
C1—C71.5061 (16)C12—H120.9500
C2—C31.3865 (18)C13—H130.9500
O1—N1—O2124 (2)C4—C5—H5120.8
O1—N1—C4125 (2)C6—C5—H5120.8
O2—N1—C4111.0 (8)C5—C6—C1120.48 (13)
O2'—N1'—O1'125 (2)C5—C6—H6119.8
O2'—N1'—C4124.5 (9)C1—C6—H6119.8
O1'—N1'—C4111 (2)O3—C7—N2124.48 (11)
C7—N2—N3119.29 (9)O3—C7—C1120.77 (11)
C7—N2—H2N120.4N2—C7—C1114.75 (10)
N3—N2—H2N120.4N3—C8—C9121.82 (10)
C8—N3—N2113.72 (9)N3—C8—H8119.1
C10—N4—C11117.17 (10)C9—C8—H8119.1
C6—C1—C2119.84 (12)C10—C9—C13117.86 (11)
C6—C1—C7116.99 (11)C10—C9—C8117.52 (10)
C2—C1—C7123.10 (11)C13—C9—C8124.57 (11)
C3—C2—C1120.18 (13)N4—C10—C9123.95 (11)
C3—C2—H2119.9N4—C10—H10118.0
C1—C2—H2119.9C9—C10—H10118.0
C4—C3—C2118.43 (14)N4—C11—C12123.02 (11)
C4—C3—H3120.8N4—C11—H11118.5
C2—C3—H3120.8C12—C11—H11118.5
C5—C4—C3122.72 (12)C13—C12—C11119.31 (11)
C5—C4—N1'110.9 (4)C13—C12—H12120.3
C3—C4—N1'126.3 (4)C11—C12—H12120.3
C5—C4—N1126.4 (4)C12—C13—C9118.67 (11)
C3—C4—N1110.8 (4)C12—C13—H13120.7
C4—C5—C6118.33 (13)C9—C13—H13120.7
C7—N2—N3—C8−177.02 (10)N1—C4—C5—C6178.1 (7)
C6—C1—C2—C3−0.52 (19)C4—C5—C6—C1−1.3 (2)
C7—C1—C2—C3−177.23 (11)C2—C1—C6—C51.50 (19)
C1—C2—C3—C4−0.57 (19)C7—C1—C6—C5178.40 (11)
C2—C3—C4—C50.7 (2)N3—N2—C7—O3−5.01 (17)
C2—C3—C4—N1'177.6 (8)N3—N2—C7—C1174.08 (9)
C2—C3—C4—N1−177.4 (6)C6—C1—C7—O3−23.95 (17)
O2'—N1'—C4—C52.3 (16)C2—C1—C7—O3152.85 (12)
O1'—N1'—C4—C5−180 (2)C6—C1—C7—N2156.92 (11)
O2'—N1'—C4—C3−174.9 (10)C2—C1—C7—N2−26.28 (17)
O1'—N1'—C4—C33(3)N2—N3—C8—C9176.74 (10)
O2'—N1'—C4—N1168 (6)N3—C8—C9—C10−179.54 (11)
O1'—N1'—C4—N1−14 (4)N3—C8—C9—C13−2.28 (18)
O1—N1—C4—C5174 (3)C11—N4—C10—C9−0.60 (17)
O2—N1—C4—C5−4.7 (15)C13—C9—C10—N41.38 (18)
O1—N1—C4—C3−8(3)C8—C9—C10—N4178.82 (10)
O2—N1—C4—C3173.3 (9)C10—N4—C11—C12−0.44 (17)
O1—N1—C4—N1'158 (7)N4—C11—C12—C130.65 (18)
O2—N1—C4—N1'−21 (4)C11—C12—C13—C90.17 (18)
C3—C4—C5—C60.2 (2)C10—C9—C13—C12−1.11 (17)
N1'—C4—C5—C6−177.1 (7)C8—C9—C13—C12−178.35 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2N···N4i0.882.092.9108 (14)154
C3—H3···O10.952.372.72 (4)101
C5—H5···O2'0.952.302.666 (8)102
C8—H8···O3ii0.952.503.1423 (14)125
C11—H11···O2iii0.952.493.364 (8)152
C11—H11···O2'iii0.952.523.371 (8)150
C13—H13···O3iv0.952.573.1279 (14)118
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯N4i0.882.092.9108 (14)154
C8—H8⋯O3ii0.952.503.1423 (14)125
C11—H11⋯O2iii0.952.493.364 (8)152
C11—H11⋯O2′iii0.952.523.371 (8)150
C13—H13⋯O3iv0.952.573.1279 (14)118

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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4.  N'-(4-Methoxy-benzyl-idene)-4-nitro-benzo-hydrazide methanol solvate.

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5.  2-[4-(2-Methyl-prop-yl)phen-yl]-N'-[(E)-1-phenyl-ethyl-idene]propane-hydrazide.

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6.  (E)-N'-(3,4-Dihydroxy-benzyl-idene)-4-nitro-benzohydrazide.

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  19 in total

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Authors:  Chun-Bao Tang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

2.  N'-(2,4-Dichloro-benzyl-idene)-2-methyl-benzohydrazide.

Authors:  Chun-Bao Tang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06

3.  (E)-N'-[4-(Dimethyl-amino)-benzyl-idene]-4-hy-droxy-benzohydrazide hemihydrate.

Authors:  Huanyu Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

4.  N'-(2-Hy-droxy-3,5-diiodo-benzyl-idene)-2-methyl-benzohydrazide.

Authors:  Chun-Bao Tang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18

5.  4-Dimethyl-amino-N'-(3-pyridyl-methyl-idene)benzohydrazide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

6.  4-Hy-droxy-N'-(4-hy-droxy-3-nitro-benzyl-idene)benzohydrazide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

7.  2-Methyl-N'-[1-(2-pyrid-yl)ethyl-idene]benzohydrazide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-30

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