Literature DB >> 24046641

3-(Prop-2-yn-1-yl-oxy)phthalo-nitrile.

Chin Yee Jan1, Norzianah Binti Haji Shamsudin, Ai Ling Tan, David J Young, Edward R T Tiekink.   

Abstract

In the title compound, C11H6N2O {systematic name: 3-(prop-2-yn-1-yl-oxy)benzene-1,2-dicarbo-nitrile}, the 14 non-H atoms are approximately coplanar (r.m.s. deviation = 0.051 Å) with the terminal ethyne group being syn with the adjacent cyano residue. In the crystal, centrosymmetric dimers are connected by pairs of C-H⋯N inter-actions and these are linked into a supra-molecular tape parallel to (1-30) via C-H⋯N inter-actions involving the same N atom as acceptor.

Entities:  

Year:  2013        PMID: 24046641      PMCID: PMC3770356          DOI: 10.1107/S1600536813015663

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to functionalized phthalocyanines, see: Chin et al. (2012 ▶). For background to the synthesis of precursor nitriles, see: Wu et al. (1998 ▶); Seven et al. (2009 ▶).

Experimental

Crystal data

C11H6N2O M = 182.18 Monoclinic, a = 4.014 (4) Å b = 6.833 (7) Å c = 33.85 (3) Å β = 90.77 (2)° V = 928.1 (16) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 153 K 0.30 × 0.16 × 0.08 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.974, T max = 0.993 6610 measured reflections 1751 independent reflections 1310 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.086 wR(F 2) = 0.250 S = 1.13 1751 reflections 127 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT (Bruker, 2011 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813015663/hg5321sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813015663/hg5321Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813015663/hg5321Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H6N2OF(000) = 376
Mr = 182.18Dx = 1.304 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2684 reflections
a = 4.014 (4) Åθ = 2.4–28.4°
b = 6.833 (7) ŵ = 0.09 mm1
c = 33.85 (3) ÅT = 153 K
β = 90.77 (2)°Prism, colourless
V = 928.1 (16) Å30.30 × 0.16 × 0.08 mm
Z = 4
Bruker APEXII diffractometer1751 independent reflections
Radiation source: fine-focus sealed tube1310 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.071
φ and ω scansθmax = 25.7°, θmin = 1.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −4→4
Tmin = 0.974, Tmax = 0.993k = −8→8
6610 measured reflectionsl = −40→41
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.086Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.250H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.1092P)2 + 0.8456P] where P = (Fo2 + 2Fc2)/3
1751 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1024 (7)0.3511 (3)0.07894 (6)0.0506 (7)
N10.4013 (9)0.7927 (4)0.10745 (9)0.0563 (9)
N20.1893 (10)0.8135 (5)0.21998 (10)0.0680 (11)
C10.0004 (8)0.3448 (5)0.11659 (9)0.0392 (8)
C20.0883 (8)0.5067 (5)0.13953 (9)0.0385 (8)
C30.0045 (8)0.5137 (5)0.17948 (9)0.0412 (8)
C4−0.1691 (9)0.3613 (6)0.19646 (11)0.0526 (10)
H4−0.22700.36550.22360.063*
C5−0.2565 (9)0.2033 (6)0.17330 (11)0.0525 (10)
H5−0.37650.09840.18480.063*
C6−0.1754 (9)0.1927 (5)0.13400 (11)0.0486 (9)
H6−0.23920.08180.11880.058*
C70.0045 (10)0.1952 (6)0.05273 (10)0.0515 (10)
H7A−0.24120.19050.04990.062*
H7B0.08310.06780.06320.062*
C80.1545 (9)0.2349 (5)0.01494 (10)0.0498 (9)
C90.2816 (12)0.2662 (7)−0.01551 (12)0.0694 (13)
H90.38440.2914−0.04010.083*
C100.2645 (8)0.6647 (5)0.12159 (9)0.0404 (8)
C110.1051 (9)0.6805 (6)0.20227 (10)0.0495 (9)
U11U22U33U12U13U23
O10.0697 (17)0.0452 (14)0.0369 (13)−0.0151 (12)0.0050 (11)−0.0086 (10)
N10.074 (2)0.0469 (18)0.0487 (18)−0.0159 (16)0.0095 (16)−0.0035 (14)
N20.088 (3)0.073 (2)0.0424 (18)−0.003 (2)0.0059 (17)−0.0152 (17)
C10.0385 (18)0.0380 (17)0.0410 (17)−0.0019 (13)−0.0001 (13)0.0016 (13)
C20.0385 (17)0.0362 (17)0.0408 (17)0.0010 (13)0.0019 (13)0.0024 (13)
C30.0407 (18)0.0452 (19)0.0376 (16)0.0053 (15)0.0020 (13)0.0023 (14)
C40.053 (2)0.063 (2)0.0417 (18)0.0042 (18)0.0083 (16)0.0119 (17)
C50.047 (2)0.051 (2)0.060 (2)−0.0061 (17)0.0055 (17)0.0173 (18)
C60.048 (2)0.0408 (19)0.056 (2)−0.0084 (15)−0.0022 (16)0.0037 (15)
C70.056 (2)0.054 (2)0.0438 (19)−0.0129 (17)−0.0041 (16)−0.0145 (16)
C80.057 (2)0.048 (2)0.044 (2)0.0008 (17)−0.0083 (17)−0.0126 (16)
C90.091 (3)0.074 (3)0.043 (2)0.003 (2)0.009 (2)−0.009 (2)
C100.049 (2)0.0364 (17)0.0353 (17)−0.0029 (15)0.0020 (14)−0.0048 (13)
C110.057 (2)0.061 (2)0.0313 (17)0.0009 (18)0.0076 (15)−0.0044 (16)
O1—C11.345 (4)C4—C51.377 (6)
O1—C71.437 (4)C4—H40.9500
N1—C101.141 (4)C5—C61.376 (5)
N2—C111.137 (5)C5—H50.9500
C1—C61.391 (5)C6—H60.9500
C1—C21.394 (5)C7—C81.447 (5)
C2—C31.399 (5)C7—H7A0.9900
C2—C101.431 (4)C7—H7B0.9900
C3—C41.382 (5)C8—C91.176 (5)
C3—C111.431 (5)C9—H90.9500
C1—O1—C7118.5 (3)C4—C5—H5119.0
O1—C1—C6126.0 (3)C5—C6—C1119.9 (3)
O1—C1—C2115.1 (3)C5—C6—H6120.1
C6—C1—C2118.9 (3)C1—C6—H6120.1
C1—C2—C3120.2 (3)O1—C7—C8107.0 (3)
C1—C2—C10119.0 (3)O1—C7—H7A110.3
C3—C2—C10120.7 (3)C8—C7—H7A110.3
C4—C3—C2120.3 (3)O1—C7—H7B110.3
C4—C3—C11121.1 (3)C8—C7—H7B110.3
C2—C3—C11118.6 (3)H7A—C7—H7B108.6
C5—C4—C3118.7 (3)C9—C8—C7178.9 (4)
C5—C4—H4120.7C8—C9—H9180.0
C3—C4—H4120.7N1—C10—C2179.0 (4)
C6—C5—C4122.0 (3)N2—C11—C3178.9 (4)
C6—C5—H5119.0
C7—O1—C1—C64.8 (5)C11—C3—C4—C5−179.3 (3)
C7—O1—C1—C2−176.3 (3)C3—C4—C5—C60.2 (6)
O1—C1—C2—C3−178.1 (3)C4—C5—C6—C10.0 (6)
C6—C1—C2—C30.9 (5)O1—C1—C6—C5178.2 (3)
O1—C1—C2—C102.0 (4)C2—C1—C6—C5−0.6 (5)
C6—C1—C2—C10−179.0 (3)C1—O1—C7—C8−178.3 (3)
C1—C2—C3—C4−0.7 (5)O1—C7—C8—C974 (21)
C10—C2—C3—C4179.2 (3)C1—C2—C10—N1123 (21)
C1—C2—C3—C11178.7 (3)C3—C2—C10—N1−57 (21)
C10—C2—C3—C11−1.4 (5)C4—C3—C11—N2153 (24)
C2—C3—C4—C50.1 (5)C2—C3—C11—N2−26 (25)
D—H···AD—HH···AD···AD—H···A
C6—H6···N1i0.952.473.335 (6)151
C9—H9···N1ii0.952.513.402 (6)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯N1i 0.952.473.335 (6)151
C9—H9⋯N1ii 0.952.513.402 (6)156

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-(Prop-2-yn-1-yl-oxy)benzene-1,2-dicarbonitrile.

Authors:  Yee Jan Chin; Ai Ling Tan; Franz L Wimmer; Aminul Huq Mirza; David J Young; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
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1.  4-[(1-Benzyl-1H-1,2,3-triazol-4-yl)meth-oxy]benzene-1,2-dicarbo-nitrile: crystal structure, Hirshfeld surface analysis and energy-minimization calculations.

Authors:  Norzianah Shamsudin; Ai Ling Tan; David J Young; Mukesh M Jotani; A Otero-de-la-Roza; Edward R T Tiekink
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  1 in total

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