| Literature DB >> 27375890 |
Norzianah Shamsudin1, Ai Ling Tan1, David J Young2, Mukesh M Jotani3, A Otero-de-la-Roza4, Edward R T Tiekink5.
Abstract
In the solid state, the title compound, C18H13N5O, adopts a conformation whereby the phenyl ring and meth-oxy-benzene-1,2-dicarbo-nitrile residue (r.m.s. deviation of the 12 non-H atoms = 0.041 Å) lie to opposite sides of the central triazolyl ring, forming dihedral angles of 79.30 (13) and 64.59 (10)°, respectively; the dihedral angle between the outer rings is 14.88 (9)°. This conformation is nearly 7 kcal mol(-1) higher in energy than the energy-minimized structure which has a syn disposition of the outer rings, enabling intra-molecular π-π inter-actions. In the crystal, methyl-ene-C-H⋯N(triazol-yl) and carbo-nitrile-N⋯π(benzene) inter-actions lead to supra-molecular chains along the a axis. Supra-molecular layers in the ab plane arise as the chains are connected by benzene-C-H⋯N(carbo-nitrile) inter-actions; layers stack with no directional inter-actions between them. The specified inter-molecular contacts along with other, weaker contributions to the supra-molecular stabilization are analysed in a Hirshfeld surface analysis.Entities:
Keywords: DFT; Hirshfeld surface; conformation; crystal structure; triazolyl
Year: 2016 PMID: 27375890 PMCID: PMC4910342 DOI: 10.1107/S2056989016004722
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C11–C16 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C10—H10 | 0.99 | 2.50 | 3.468 (3) | 167 |
| C10—H10 | 0.99 | 2.53 | 3.477 (3) | 161 |
| C12—H12⋯N4iii | 0.95 | 2.47 | 3.353 (3) | 155 |
| C18—N5⋯ | 1.15 (1) | 3.81 (1) | 3.853 (2) | 83 (1) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2A view of the supramolecular layer in the ab plane in (I). The layer is sustained by C—H⋯N and C—H⋯N interactions shown as orange and purple dashed lines, respectively.
Figure 3Unit cell contents for (I) shown in projection down the a axis, showing the stacking of layers. The C—H⋯N interactions are shown as orange dashed lines.
Figure 4Two views of the Hirshfeld surfaces for (I) mapped over d norm.
Figure 5Hirshfeld surface for (I) mapped over the electrostatic potential.
Figure 6The two-dimensional fingerprint plots for (I): (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, and (d) N⋯H/H⋯N interactions.
Percentage contribution of the different intermolecular interactions to the Hirshfeld surface of (I)
| Contact | % |
|---|---|
| H⋯H | 24.7 |
| N⋯H/H⋯N | 35.7 |
| C⋯H/H⋯C | 25.8 |
| C⋯C | 3.7 |
| C⋯N | 3.5 |
| O⋯H/H⋯O | 3.2 |
| C⋯O | 2.7 |
| N⋯N | 0.7 |
Figure 7Hirshfeld surface for (I) mapped over curvedness.
Dihedral angle (°) data for (I) and related literature structures
| Structure | Triazolyl/benzyl-phenyl | Triazolyl/ | Benzyl-phenyl/ | CSD refcode | Reference |
|---|---|---|---|---|---|
| (I) | 79.30 (13) | 64.59 (10) | 14.88 (9) | – | This work |
| (II) | 77.89 (6) | 56.69 (4) | 85.82 (5) | CAKSAJ | Rostovtsev |
| (III) | 79.63 (5) | 59.36 95) | 85.56 (6) | BEDREJ | Garcia |
| (IV) | 79.16 (10) | 59.57 (11) | 84.25 (10) | CIGRUH | López-Ruiz |
| (V) | 82.03 (9) | 26.57 (9) | 83.63 (8) | CIGRER | López-Ruiz |
Notes: (a) See Scheme 2 for chemical structures; (b) Groom & Allen (2014 ▸).
Figure 8Two views of the different conformations in (I) red image, (II) blue, (III) green, (IV) aqua and (V) pink. The molecules have been overlapped so that the central rings are coincident.
Figure 9Energy profile (kcal mol−1) for conformations of (I) differing by a rotation (30° steps) about the O—C bond.
Figure 10Overlay diagram of the experimental (red image) and energy-minimized (blue) structures of (I). The molecules have been overlapped so that the five-membered rings are coincident.
Experimental details
| Crystal data | |
| Chemical formula | C18H13N5O |
|
| 315.33 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 5.2454 (5), 15.3860 (14), 19.042 (3) |
| β (°) | 90.927 (10) |
|
| 1536.6 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.35 × 0.10 × 0.10 |
| Data collection | |
| Diffractometer | Agilent Technologies SuperNova Dual diffractometer with an Atlas detector |
| Absorption correction | Multi-scan ( |
|
| 0.588, 1.000 |
| No. of measured, independent and observed [ | 15856, 3527, 2099 |
|
| 0.080 |
| (sin θ/λ)max (Å−1) | 0.650 |
| Refinement | |
|
| 0.057, 0.136, 1.07 |
| No. of reflections | 3527 |
| No. of parameters | 217 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.26, −0.25 |
Computer programs: CrysAlis PRO (Agilent, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), QMol (Gans & Shalloway, 2001 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C18H13N5O | |
| Monoclinic, | Mo |
| Cell parameters from 1806 reflections | |
| θ = 2.5–27.5° | |
| µ = 0.09 mm−1 | |
| β = 90.927 (10)° | |
| Prism, light-brown | |
| 0.35 × 0.10 × 0.10 mm |
| Agilent Technologies SuperNova Dual diffractometer with an Atlas detector | 3527 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 2099 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.5°, θmin = 2.5° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 15856 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3527 reflections | Δρmax = 0.26 e Å−3 |
| 217 parameters | Δρmin = −0.25 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.3153 (3) | 0.69488 (10) | 0.54542 (9) | 0.0262 (4) | |
| N1 | 0.5641 (4) | 0.50248 (12) | 0.70174 (11) | 0.0233 (5) | |
| N2 | 0.7432 (4) | 0.49329 (13) | 0.65250 (12) | 0.0294 (5) | |
| N3 | 0.6509 (4) | 0.52816 (13) | 0.59396 (11) | 0.0279 (5) | |
| N4 | 0.7655 (4) | 1.01212 (13) | 0.44279 (12) | 0.0312 (5) | |
| N5 | 1.2066 (4) | 0.86108 (14) | 0.33358 (13) | 0.0342 (6) | |
| C1 | 0.3561 (4) | 0.54262 (15) | 0.67500 (14) | 0.0251 (6) | |
| H1 | 0.2032 | 0.5564 | 0.6987 | 0.030* | |
| C2 | 0.4125 (4) | 0.55919 (14) | 0.60643 (13) | 0.0216 (5) | |
| C3 | 0.6072 (5) | 0.46954 (16) | 0.77327 (14) | 0.0282 (6) | |
| H3A | 0.5691 | 0.5162 | 0.8073 | 0.034* | |
| H3B | 0.7892 | 0.4537 | 0.7794 | 0.034* | |
| C4 | 0.4444 (4) | 0.39128 (15) | 0.78895 (13) | 0.0234 (5) | |
| C5 | 0.4866 (4) | 0.31288 (15) | 0.75402 (14) | 0.0294 (6) | |
| H5 | 0.6186 | 0.3087 | 0.7206 | 0.035* | |
| C6 | 0.3363 (5) | 0.24131 (16) | 0.76800 (15) | 0.0330 (7) | |
| H6 | 0.3662 | 0.1880 | 0.7444 | 0.040* | |
| C7 | 0.1427 (5) | 0.24702 (17) | 0.81622 (15) | 0.0329 (7) | |
| H7 | 0.0388 | 0.1979 | 0.8254 | 0.040* | |
| C8 | 0.1008 (5) | 0.32439 (16) | 0.85111 (14) | 0.0312 (6) | |
| H8 | −0.0313 | 0.3282 | 0.8845 | 0.037* | |
| C9 | 0.2511 (4) | 0.39631 (16) | 0.83744 (14) | 0.0273 (6) | |
| H9 | 0.2213 | 0.4494 | 0.8615 | 0.033* | |
| C10 | 0.2539 (4) | 0.60336 (14) | 0.55118 (13) | 0.0240 (6) | |
| H10A | 0.2818 | 0.5747 | 0.5054 | 0.029* | |
| H10B | 0.0714 | 0.5970 | 0.5626 | 0.029* | |
| C11 | 0.5055 (4) | 0.72062 (15) | 0.50218 (13) | 0.0224 (5) | |
| C12 | 0.5349 (4) | 0.81069 (15) | 0.49807 (13) | 0.0227 (5) | |
| H12 | 0.4294 | 0.8480 | 0.5248 | 0.027* | |
| C13 | 0.7180 (4) | 0.84514 (14) | 0.45502 (13) | 0.0224 (5) | |
| C14 | 0.8748 (4) | 0.79094 (15) | 0.41502 (13) | 0.0227 (5) | |
| C15 | 0.8425 (4) | 0.70107 (15) | 0.41989 (13) | 0.0254 (6) | |
| H15 | 0.9464 | 0.6635 | 0.3929 | 0.031* | |
| C16 | 0.6609 (4) | 0.66612 (15) | 0.46354 (13) | 0.0236 (5) | |
| H16 | 0.6425 | 0.6049 | 0.4671 | 0.028* | |
| C17 | 0.7433 (4) | 0.93813 (16) | 0.44910 (13) | 0.0240 (6) | |
| C18 | 1.0608 (4) | 0.82840 (15) | 0.36943 (14) | 0.0256 (6) |
| O1 | 0.0306 (9) | 0.0188 (9) | 0.0296 (11) | 0.0005 (7) | 0.0083 (8) | 0.0045 (8) |
| N1 | 0.0236 (10) | 0.0228 (11) | 0.0236 (12) | −0.0017 (8) | 0.0033 (9) | 0.0012 (9) |
| N2 | 0.0230 (10) | 0.0349 (12) | 0.0305 (14) | 0.0018 (9) | 0.0057 (10) | 0.0039 (10) |
| N3 | 0.0262 (11) | 0.0301 (12) | 0.0276 (13) | 0.0001 (9) | 0.0053 (9) | 0.0031 (10) |
| N4 | 0.0359 (12) | 0.0237 (12) | 0.0344 (14) | 0.0005 (9) | 0.0068 (10) | 0.0009 (10) |
| N5 | 0.0384 (12) | 0.0288 (12) | 0.0358 (15) | −0.0041 (10) | 0.0103 (11) | 0.0015 (11) |
| C1 | 0.0237 (12) | 0.0227 (13) | 0.0291 (16) | 0.0034 (10) | 0.0055 (11) | −0.0006 (11) |
| C2 | 0.0211 (11) | 0.0152 (12) | 0.0285 (15) | −0.0037 (9) | 0.0044 (10) | −0.0014 (10) |
| C3 | 0.0300 (13) | 0.0289 (14) | 0.0256 (15) | −0.0009 (10) | −0.0024 (11) | 0.0036 (12) |
| C4 | 0.0228 (12) | 0.0229 (13) | 0.0245 (15) | 0.0035 (10) | −0.0023 (10) | 0.0018 (11) |
| C5 | 0.0282 (13) | 0.0287 (14) | 0.0314 (16) | 0.0054 (10) | 0.0033 (11) | 0.0000 (12) |
| C6 | 0.0425 (15) | 0.0220 (14) | 0.0344 (17) | 0.0023 (11) | −0.0022 (13) | 0.0018 (12) |
| C7 | 0.0365 (14) | 0.0250 (14) | 0.0371 (18) | −0.0042 (11) | −0.0027 (13) | 0.0105 (12) |
| C8 | 0.0274 (13) | 0.0352 (16) | 0.0310 (16) | −0.0002 (11) | 0.0017 (11) | 0.0055 (13) |
| C9 | 0.0268 (12) | 0.0261 (13) | 0.0291 (16) | 0.0032 (10) | 0.0015 (11) | 0.0002 (12) |
| C10 | 0.0266 (12) | 0.0192 (12) | 0.0265 (15) | −0.0036 (9) | 0.0057 (11) | 0.0030 (11) |
| C11 | 0.0215 (11) | 0.0247 (13) | 0.0211 (14) | −0.0030 (9) | −0.0007 (10) | 0.0056 (11) |
| C12 | 0.0239 (12) | 0.0210 (12) | 0.0233 (14) | 0.0024 (9) | 0.0017 (10) | −0.0007 (10) |
| C13 | 0.0254 (12) | 0.0193 (12) | 0.0224 (14) | −0.0001 (9) | −0.0014 (10) | 0.0007 (10) |
| C14 | 0.0256 (12) | 0.0215 (13) | 0.0209 (14) | −0.0014 (10) | 0.0019 (10) | 0.0023 (10) |
| C15 | 0.0279 (12) | 0.0239 (13) | 0.0247 (15) | 0.0021 (10) | 0.0039 (11) | −0.0021 (11) |
| C16 | 0.0293 (12) | 0.0181 (12) | 0.0237 (15) | −0.0010 (10) | 0.0052 (11) | 0.0002 (11) |
| C17 | 0.0223 (12) | 0.0279 (14) | 0.0219 (14) | 0.0011 (10) | 0.0040 (10) | 0.0000 (11) |
| C18 | 0.0279 (13) | 0.0217 (13) | 0.0272 (16) | 0.0014 (10) | −0.0004 (12) | −0.0006 (11) |
| O1—C11 | 1.363 (3) | C6—H6 | 0.9500 |
| O1—C10 | 1.449 (3) | C7—C8 | 1.382 (4) |
| N1—N2 | 1.346 (3) | C7—H7 | 0.9500 |
| N1—C1 | 1.347 (3) | C8—C9 | 1.386 (3) |
| N1—C3 | 1.467 (3) | C8—H8 | 0.9500 |
| N2—N3 | 1.322 (3) | C9—H9 | 0.9500 |
| N3—C2 | 1.363 (3) | C10—H10A | 0.9900 |
| N4—C17 | 1.151 (3) | C10—H10B | 0.9900 |
| N5—C18 | 1.149 (3) | C11—C16 | 1.388 (3) |
| C1—C2 | 1.367 (3) | C11—C12 | 1.397 (3) |
| C1—H1 | 0.9500 | C12—C13 | 1.379 (3) |
| C2—C10 | 1.494 (3) | C12—H12 | 0.9500 |
| C3—C4 | 1.509 (3) | C13—C14 | 1.404 (3) |
| C3—H3A | 0.9900 | C13—C17 | 1.441 (3) |
| C3—H3B | 0.9900 | C14—C15 | 1.396 (3) |
| C4—C9 | 1.385 (3) | C14—C18 | 1.437 (4) |
| C4—C5 | 1.397 (3) | C15—C16 | 1.383 (3) |
| C5—C6 | 1.383 (3) | C15—H15 | 0.9500 |
| C5—H5 | 0.9500 | C16—H16 | 0.9500 |
| C6—C7 | 1.383 (4) | ||
| C11—O1—C10 | 119.61 (18) | C7—C8—H8 | 119.9 |
| N2—N1—C1 | 110.8 (2) | C9—C8—H8 | 119.9 |
| N2—N1—C3 | 120.75 (19) | C4—C9—C8 | 120.4 (2) |
| C1—N1—C3 | 128.4 (2) | C4—C9—H9 | 119.8 |
| N3—N2—N1 | 107.14 (18) | C8—C9—H9 | 119.8 |
| N2—N3—C2 | 108.6 (2) | O1—C10—C2 | 111.92 (17) |
| N1—C1—C2 | 105.1 (2) | O1—C10—H10A | 109.2 |
| N1—C1—H1 | 127.5 | C2—C10—H10A | 109.2 |
| C2—C1—H1 | 127.5 | O1—C10—H10B | 109.2 |
| N3—C2—C1 | 108.3 (2) | C2—C10—H10B | 109.2 |
| N3—C2—C10 | 122.6 (2) | H10A—C10—H10B | 107.9 |
| C1—C2—C10 | 129.1 (2) | O1—C11—C16 | 125.9 (2) |
| N1—C3—C4 | 112.33 (19) | O1—C11—C12 | 113.9 (2) |
| N1—C3—H3A | 109.1 | C16—C11—C12 | 120.2 (2) |
| C4—C3—H3A | 109.1 | C13—C12—C11 | 119.6 (2) |
| N1—C3—H3B | 109.1 | C13—C12—H12 | 120.2 |
| C4—C3—H3B | 109.1 | C11—C12—H12 | 120.2 |
| H3A—C3—H3B | 107.9 | C12—C13—C14 | 120.9 (2) |
| C9—C4—C5 | 119.3 (2) | C12—C13—C17 | 119.6 (2) |
| C9—C4—C3 | 120.7 (2) | C14—C13—C17 | 119.4 (2) |
| C5—C4—C3 | 120.0 (2) | C15—C14—C13 | 118.6 (2) |
| C6—C5—C4 | 120.1 (3) | C15—C14—C18 | 121.4 (2) |
| C6—C5—H5 | 120.0 | C13—C14—C18 | 119.9 (2) |
| C4—C5—H5 | 120.0 | C16—C15—C14 | 120.7 (2) |
| C5—C6—C7 | 120.3 (3) | C16—C15—H15 | 119.7 |
| C5—C6—H6 | 119.9 | C14—C15—H15 | 119.7 |
| C7—C6—H6 | 119.9 | C15—C16—C11 | 120.0 (2) |
| C8—C7—C6 | 119.9 (2) | C15—C16—H16 | 120.0 |
| C8—C7—H7 | 120.1 | C11—C16—H16 | 120.0 |
| C6—C7—H7 | 120.1 | N4—C17—C13 | 178.4 (3) |
| C7—C8—C9 | 120.1 (3) | N5—C18—C14 | 177.7 (3) |
| C1—N1—N2—N3 | 0.4 (2) | C7—C8—C9—C4 | −0.1 (4) |
| C3—N1—N2—N3 | 179.53 (19) | C11—O1—C10—C2 | 87.8 (2) |
| N1—N2—N3—C2 | −0.2 (2) | N3—C2—C10—O1 | −84.1 (3) |
| N2—N1—C1—C2 | −0.5 (3) | C1—C2—C10—O1 | 95.6 (3) |
| C3—N1—C1—C2 | −179.5 (2) | C10—O1—C11—C16 | −3.0 (3) |
| N2—N3—C2—C1 | −0.1 (3) | C10—O1—C11—C12 | 176.24 (18) |
| N2—N3—C2—C10 | 179.62 (19) | O1—C11—C12—C13 | −178.81 (19) |
| N1—C1—C2—N3 | 0.4 (3) | C16—C11—C12—C13 | 0.5 (3) |
| N1—C1—C2—C10 | −179.4 (2) | C11—C12—C13—C14 | 0.2 (3) |
| N2—N1—C3—C4 | −109.4 (2) | C11—C12—C13—C17 | 178.1 (2) |
| C1—N1—C3—C4 | 69.6 (3) | C12—C13—C14—C15 | −0.3 (3) |
| N1—C3—C4—C9 | −112.3 (3) | C17—C13—C14—C15 | −178.2 (2) |
| N1—C3—C4—C5 | 67.2 (3) | C12—C13—C14—C18 | 178.7 (2) |
| C9—C4—C5—C6 | 0.0 (3) | C17—C13—C14—C18 | 0.8 (3) |
| C3—C4—C5—C6 | −179.5 (2) | C13—C14—C15—C16 | −0.4 (3) |
| C4—C5—C6—C7 | 0.4 (4) | C18—C14—C15—C16 | −179.4 (2) |
| C5—C6—C7—C8 | −0.6 (4) | C14—C15—C16—C11 | 1.1 (3) |
| C6—C7—C8—C9 | 0.5 (4) | O1—C11—C16—C15 | 178.1 (2) |
| C5—C4—C9—C8 | −0.1 (3) | C12—C11—C16—C15 | −1.1 (3) |
| C3—C4—C9—C8 | 179.4 (2) |
| H··· | ||||
| C10—H10 | 0.99 | 2.50 | 3.468 (3) | 167 |
| C10—H10 | 0.99 | 2.53 | 3.477 (3) | 161 |
| C12—H12···N4iii | 0.95 | 2.47 | 3.353 (3) | 155 |
| C18—N5··· | 1.15 (1) | 3.81 (1) | 3.853 (2) | 83 (1) |