Literature DB >> 24046628

rac-4-(4-Chloro-phen-yl)-2-methyl-amino-3-nitro-5,6,7,8-tetra-hydro-4H-chromen-5-one.

P Narayanan1, Jayabal Kamalraja, Paramasivam T Perumal, K Sethusankar.   

Abstract

The title compound, C16H15ClN2O4, contains a chiral centre and crystallizes as a racemate. The methyl-ene group β-positioned to the carbonyl group is partially (21%) disordered. It flips to the opposite sides of the corresponding six-membered carbocycle by -0.304 (3) and 0.197 (11) Å, producing alternative envelope conformations. The planes of the pyran and chloro-phenyl rings form a dihedral angle of 86.25 (9)°. The mol-ecular structure is characterized by an intra-molecular N-H⋯O inter-action, which generates an S(6) ring motif. The corresponding amino N atom deviates from the plane of the pyran ring by 0.1634 (19) Å. In the crystal, mol-ecules are linked via C-H⋯O hydrogen bonds, forming C(8) chains running parallel to the b-axis direction. The crystal structure also features C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 24046628      PMCID: PMC3772485          DOI: 10.1107/S1600536813014530

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the uses and biological importance of chromene, see: Ercole et al. (2009 ▶); Geen et al. (1996 ▶) Khan et al. (2010 ▶); Raj et al. (2010 ▶). For related structures, see: Sun et al., (2012 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H15ClN2O4 M = 334.75 Monoclinic, a = 8.0285 (4) Å b = 10.8460 (5) Å c = 18.2337 (9) Å β = 94.067 (2)° V = 1583.74 (13) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.35 × 0.30 × 0.30 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.912, T max = 0.924 11848 measured reflections 2786 independent reflections 2208 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.119 S = 1.09 2786 reflections 218 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813014530/ld2104sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813014530/ld2104Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813014530/ld2104Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15ClN2O4F(000) = 696
Mr = 334.75Dx = 1.404 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2208 reflections
a = 8.0285 (4) Åθ = 2.2–25.0°
b = 10.8460 (5) ŵ = 0.26 mm1
c = 18.2337 (9) ÅT = 296 K
β = 94.067 (2)°Block, colourless
V = 1583.74 (13) Å30.35 × 0.30 × 0.30 mm
Z = 4
Bruker SMART APEXII CCD diffractometer2786 independent reflections
Radiation source: fine-focus sealed tube2208 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
ω and φ scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→8
Tmin = 0.912, Tmax = 0.924k = −12→12
11848 measured reflectionsl = −15→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0482P)2 + 0.9511P] where P = (Fo2 + 2Fc2)/3
2786 reflections(Δ/σ)max = 0.002
218 parametersΔρmax = 0.32 e Å3
4 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.8013 (3)0.7871 (2)0.15451 (11)0.0393 (5)
H10.89340.75100.17980.047*
C20.7070 (3)0.8723 (2)0.19018 (12)0.0440 (5)
H20.73580.89440.23870.053*
C30.5699 (3)0.9234 (2)0.15224 (13)0.0443 (5)
C40.5244 (3)0.8923 (2)0.08060 (13)0.0426 (5)
H40.43020.92710.05610.051*
C50.6215 (2)0.80814 (19)0.04556 (11)0.0359 (5)
H50.59270.7870−0.00310.043*
C60.7614 (2)0.75474 (18)0.08203 (11)0.0321 (4)
C70.8702 (2)0.66430 (18)0.04219 (11)0.0333 (5)
H70.96480.64020.07610.040*
C80.9376 (2)0.72565 (18)−0.02368 (11)0.0340 (5)
C91.0653 (3)0.8231 (2)−0.01071 (13)0.0408 (5)
C101.1262 (3)0.8872 (2)−0.07623 (15)0.0568 (7)
H10A1.15140.9722−0.06310.068*0.787 (5)
H10B1.22930.8485−0.08880.068*0.787 (5)
H10C1.07320.9676−0.07940.068*0.213 (5)
H10D1.24500.9012−0.06640.068*0.213 (5)
C111.0072 (4)0.8859 (3)−0.14166 (18)0.0539 (9)0.787 (5)
H11A1.06190.9181−0.18340.065*0.787 (5)
H11B0.91400.9397−0.13310.065*0.787 (5)
C11'1.1015 (14)0.8288 (11)−0.1501 (5)0.0539 (9)0.213 (5)
H11C1.19490.7744−0.15720.065*0.213 (5)
H11D1.10090.8925−0.18740.065*0.213 (5)
C120.9406 (3)0.7556 (2)−0.16027 (13)0.0488 (6)
H12A0.84570.7608−0.19620.059*0.787 (5)
H12B1.02680.7070−0.18130.059*0.787 (5)
H12C0.95280.6925−0.19720.059*0.213 (5)
H12D0.85190.8105−0.17870.059*0.213 (5)
C130.8893 (3)0.69552 (19)−0.09213 (11)0.0360 (5)
C140.7355 (2)0.52214 (18)−0.05564 (11)0.0344 (5)
C150.7772 (2)0.54932 (18)0.01722 (11)0.0329 (5)
C160.6240 (4)0.3970 (3)−0.15987 (14)0.0699 (9)
H16A0.54750.4562−0.18230.105*
H16B0.57710.3158−0.16550.105*
H16C0.72750.4004−0.18310.105*
N10.7340 (2)0.46946 (16)0.07175 (10)0.0408 (4)
N20.6539 (2)0.42483 (17)−0.08263 (10)0.0442 (5)
O10.77966 (19)0.59923 (14)−0.10937 (8)0.0436 (4)
O21.1201 (2)0.84650 (17)0.05139 (10)0.0574 (5)
O30.6480 (2)0.37405 (14)0.05646 (9)0.0529 (4)
O40.7809 (3)0.49375 (16)0.13643 (9)0.0593 (5)
Cl10.45353 (11)1.03329 (9)0.19602 (5)0.0864 (3)
H2A0.621 (3)0.377 (2)−0.0458 (10)0.058 (8)*
U11U22U33U12U13U23
C10.0421 (12)0.0421 (12)0.0334 (11)−0.0032 (10)0.0014 (9)0.0005 (9)
C20.0523 (13)0.0468 (13)0.0341 (12)−0.0107 (11)0.0099 (10)−0.0078 (10)
C30.0439 (12)0.0403 (12)0.0510 (14)−0.0058 (10)0.0186 (10)−0.0095 (11)
C40.0342 (11)0.0407 (12)0.0533 (14)−0.0023 (9)0.0048 (10)0.0005 (10)
C50.0362 (11)0.0359 (11)0.0354 (11)−0.0074 (9)0.0023 (8)−0.0038 (9)
C60.0334 (10)0.0292 (10)0.0342 (11)−0.0072 (8)0.0056 (8)−0.0008 (8)
C70.0329 (10)0.0325 (11)0.0342 (11)−0.0016 (8)−0.0002 (8)0.0004 (9)
C80.0325 (10)0.0301 (11)0.0401 (12)−0.0018 (8)0.0065 (8)−0.0025 (9)
C90.0336 (11)0.0371 (12)0.0520 (14)−0.0031 (9)0.0066 (10)−0.0091 (10)
C100.0599 (15)0.0415 (14)0.0707 (17)−0.0169 (12)0.0173 (13)−0.0015 (12)
C110.062 (2)0.0432 (19)0.0571 (19)−0.0125 (14)0.0095 (16)0.0095 (15)
C11'0.062 (2)0.0432 (19)0.0571 (19)−0.0125 (14)0.0095 (16)0.0095 (15)
C120.0615 (15)0.0446 (13)0.0417 (13)−0.0119 (11)0.0136 (11)0.0021 (10)
C130.0379 (11)0.0303 (11)0.0405 (12)−0.0044 (9)0.0084 (9)−0.0011 (9)
C140.0345 (10)0.0297 (10)0.0399 (12)−0.0027 (8)0.0081 (8)−0.0001 (9)
C150.0360 (10)0.0271 (10)0.0358 (11)−0.0005 (8)0.0044 (8)0.0014 (8)
C160.087 (2)0.076 (2)0.0483 (16)−0.0372 (16)0.0119 (14)−0.0187 (14)
N10.0514 (11)0.0311 (10)0.0404 (11)0.0013 (8)0.0063 (8)0.0047 (8)
N20.0542 (11)0.0378 (11)0.0416 (11)−0.0144 (9)0.0102 (9)−0.0070 (9)
O10.0555 (9)0.0415 (9)0.0341 (8)−0.0178 (7)0.0051 (7)−0.0012 (7)
O20.0482 (10)0.0634 (11)0.0606 (12)−0.0179 (8)0.0035 (8)−0.0148 (9)
O30.0695 (11)0.0331 (9)0.0572 (11)−0.0129 (8)0.0109 (8)0.0050 (7)
O40.0923 (14)0.0494 (10)0.0353 (10)−0.0065 (9)−0.0008 (9)0.0095 (8)
Cl10.0797 (5)0.0901 (6)0.0916 (6)0.0240 (4)0.0224 (4)−0.0350 (5)
C1—C61.383 (3)C10—H10D0.9700
C1—C21.386 (3)C11—C121.540 (4)
C1—H10.9300C11—H11A0.9700
C2—C31.375 (3)C11—H11B0.9700
C2—H20.9300C11'—C121.516 (8)
C3—C41.373 (3)C11'—H11C0.9700
C3—Cl11.742 (2)C11'—H11D0.9700
C4—C51.386 (3)C12—C131.487 (3)
C4—H40.9300C12—H12A0.9700
C5—C61.390 (3)C12—H12B0.9700
C5—H50.9300C12—H12C0.9700
C6—C71.531 (3)C12—H12D0.9700
C7—C81.507 (3)C13—O11.387 (2)
C7—C151.507 (3)C14—N21.319 (3)
C7—H70.9800C14—O11.354 (2)
C8—C131.321 (3)C14—C151.379 (3)
C8—C91.480 (3)C15—N11.381 (3)
C9—O21.212 (3)C16—N21.444 (3)
C9—C101.494 (3)C16—H16A0.9600
C10—C111.475 (4)C16—H16B0.9600
C10—C11'1.489 (8)C16—H16C0.9600
C10—H10A0.9700N1—O41.241 (2)
C10—H10B0.9700N1—O31.264 (2)
C10—H10C0.9700N2—H2A0.901 (10)
C6—C1—C2121.4 (2)C12—C11—H11A109.1
C6—C1—H1119.3C10—C11—H11B109.1
C2—C1—H1119.3C12—C11—H11B109.1
C3—C2—C1118.5 (2)H11A—C11—H11B107.8
C3—C2—H2120.7C10—C11'—C12113.0 (6)
C1—C2—H2120.7C10—C11'—H11C109.0
C4—C3—C2122.0 (2)C12—C11'—H11C109.0
C4—C3—Cl1119.25 (19)C10—C11'—H11D109.0
C2—C3—Cl1118.77 (18)C12—C11'—H11D109.0
C3—C4—C5118.7 (2)H11C—C11'—H11D107.8
C3—C4—H4120.7C13—C12—C11'114.3 (4)
C5—C4—H4120.7C13—C12—C11109.3 (2)
C4—C5—C6121.05 (19)C13—C12—H12A109.8
C4—C5—H5119.5C11'—C12—H12A132.3
C6—C5—H5119.5C11—C12—H12A109.8
C1—C6—C5118.42 (19)C13—C12—H12B109.8
C1—C6—C7120.98 (18)C11'—C12—H12B72.9
C5—C6—C7120.58 (17)C11—C12—H12B109.8
C8—C7—C15108.83 (16)H12A—C12—H12B108.3
C8—C7—C6110.16 (16)C13—C12—H12C108.6
C15—C7—C6112.73 (16)C11'—C12—H12C109.1
C8—C7—H7108.3C11—C12—H12C138.6
C15—C7—H7108.3H12A—C12—H12C71.7
C6—C7—H7108.3C13—C12—H12D108.6
C13—C8—C9118.77 (19)C11'—C12—H12D108.6
C13—C8—C7123.07 (18)C11—C12—H12D75.4
C9—C8—C7118.15 (18)H12B—C12—H12D136.4
O2—C9—C8120.0 (2)H12C—C12—H12D107.5
O2—C9—C10122.1 (2)C8—C13—O1122.63 (18)
C8—C9—C10117.8 (2)C8—C13—C12126.9 (2)
C11—C10—C9114.4 (2)O1—C13—C12110.45 (18)
C11'—C10—C9119.7 (4)N2—C14—O1111.88 (18)
C11—C10—H10A108.7N2—C14—C15127.66 (19)
C11'—C10—H10A129.7O1—C14—C15120.45 (18)
C9—C10—H10A108.7C14—C15—N1120.21 (18)
C11—C10—H10B108.7C14—C15—C7123.32 (18)
C11'—C10—H10B70.3N1—C15—C7116.47 (17)
C9—C10—H10B108.7N2—C16—H16A109.5
H10A—C10—H10B107.6N2—C16—H16B109.5
C11—C10—H10C72.8H16A—C16—H16B109.5
C11'—C10—H10C107.4N2—C16—H16C109.5
C9—C10—H10C107.4H16A—C16—H16C109.5
H10B—C10—H10C138.8H16B—C16—H16C109.5
C11—C10—H10D136.3O4—N1—O3120.52 (18)
C11'—C10—H10D107.4O4—N1—C15118.43 (18)
C9—C10—H10D107.4O3—N1—C15121.05 (18)
H10A—C10—H10D67.7C14—N2—C16125.1 (2)
H10C—C10—H10D106.9C14—N2—H2A110.2 (17)
C10—C11—C12112.5 (2)C16—N2—H2A124.7 (17)
C10—C11—H11A109.1C14—O1—C13119.69 (16)
C6—C1—C2—C30.9 (3)C10—C11'—C12—C13−33.1 (11)
C1—C2—C3—C40.1 (3)C10—C11'—C12—C1157.6 (6)
C1—C2—C3—Cl1−178.49 (17)C10—C11—C12—C1346.9 (3)
C2—C3—C4—C5−0.9 (3)C10—C11—C12—C11'−58.2 (6)
Cl1—C3—C4—C5177.67 (16)C9—C8—C13—O1175.11 (18)
C3—C4—C5—C60.7 (3)C7—C8—C13—O1−4.1 (3)
C2—C1—C6—C5−1.1 (3)C9—C8—C13—C12−4.8 (3)
C2—C1—C6—C7177.64 (19)C7—C8—C13—C12176.0 (2)
C4—C5—C6—C10.3 (3)C11'—C12—C13—C820.5 (7)
C4—C5—C6—C7−178.48 (18)C11—C12—C13—C8−20.3 (3)
C1—C6—C7—C8−119.8 (2)C11'—C12—C13—O1−159.3 (6)
C5—C6—C7—C858.9 (2)C11—C12—C13—O1159.8 (2)
C1—C6—C7—C15118.4 (2)N2—C14—C15—N10.5 (3)
C5—C6—C7—C15−62.8 (2)O1—C14—C15—N1−179.05 (18)
C15—C7—C8—C1313.3 (3)N2—C14—C15—C7−179.6 (2)
C6—C7—C8—C13−110.8 (2)O1—C14—C15—C70.9 (3)
C15—C7—C8—C9−166.00 (17)C8—C7—C15—C14−11.7 (3)
C6—C7—C8—C969.9 (2)C6—C7—C15—C14110.8 (2)
C13—C8—C9—O2−174.9 (2)C8—C7—C15—N1168.27 (17)
C7—C8—C9—O24.4 (3)C6—C7—C15—N1−69.2 (2)
C13—C8—C9—C103.3 (3)C14—C15—N1—O4176.39 (19)
C7—C8—C9—C10−177.4 (2)C7—C15—N1—O4−3.6 (3)
O2—C9—C10—C11−156.9 (3)C14—C15—N1—O3−3.9 (3)
C8—C9—C10—C1124.9 (3)C7—C15—N1—O3176.11 (18)
O2—C9—C10—C11'159.0 (6)O1—C14—N2—C164.2 (3)
C8—C9—C10—C11'−19.1 (7)C15—C14—N2—C16−175.4 (2)
C11'—C10—C11—C1257.4 (6)N2—C14—O1—C13−169.49 (18)
C9—C10—C11—C12−50.4 (4)C15—C14—O1—C1310.1 (3)
C11—C10—C11'—C12−59.2 (7)C8—C13—O1—C14−8.7 (3)
C9—C10—C11'—C1233.9 (11)C12—C13—O1—C14171.21 (19)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O30.90 (2)1.86 (2)2.599 (2)137 (2)
C2—H2···O4i0.932.533.420 (3)160
C10—H10A···Cg1ii0.972.753.515 (2)136
C16—H16B···Cg1iii0.962.763.577 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the pyran ring C7/C8/C13/O1/C14/C15.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O30.90 (2)1.86 (2)2.599 (2)137 (2)
C2—H2⋯O4i 0.932.533.420 (3)160
C10—H10ACg1ii 0.972.753.515 (2)136
C16—H16BCg1iii 0.962.763.577 (3)144

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-Formylchromones: potential antiinflammatory agents.

Authors:  Khalid M Khan; Nida Ambreen; Uzma Rasool Mughal; Saima Jalil; Shahnaz Perveen; M Iqbal Choudhary
Journal:  Eur J Med Chem       Date:  2010-06-08       Impact factor: 6.514

3.  Cytotoxic activity of 3-(5-phenyl-3H-[1,2,4]dithiazol-3-yl)chromen-4-ones and 4-oxo-4H-chromene-3-carbothioic acid N-phenylamides.

Authors:  Tilak Raj; Richa Kaur Bhatia; Ashish Kapur; Madhunika Sharma; A K Saxena; M P S Ishar
Journal:  Eur J Med Chem       Date:  2009-11-06       Impact factor: 6.514

4.  4-(4-Chloro-phen-yl)-3-cyano-7-(4-meth-oxy-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromen-2-aminium methano-late.

Authors:  Rong Sun; Ke Wang; Dong-Dong Wu; Wei Huang; Yang-Bing Ou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  (4S*)-2-Methyl-amino-3-nitro-4-(4-nitro-phen-yl)-5,6,7,8-tetra-hydro-4H-chromen-5-one.

Authors:  P Narayanan; Jayabal Kamalraja; Paramasivam T Perumal; K Sethusankar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-03
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.