Literature DB >> 22412688

4-(4-Chloro-phen-yl)-3-cyano-7-(4-meth-oxy-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromen-2-aminium methano-late.

Rong Sun, Ke Wang, Dong-Dong Wu, Wei Huang, Yang-Bing Ou.   

Abstract

In the cation of the title organic ion pair compound, C(23)H(20)ClN(2)O(3) (+)·CH(3)O(-), the cyclo-hexyl ring shows a half-boat conformation and the dihedral angles between two benzene rings and the pyran ring are 83.14 (7) and 73.18 (9)°. In the crystal, centrosymmetrically related cations are linked into a dimer by pairs of N-H⋯N hydrogen bonds, generating an R(2) (2)(12) ring motif. The anion inter-acts with the dimer through an N-H⋯O hydrogen bond. π-π inter-actions between pyran rings of adjacent dimers, with a centroid-centroid distance of 3.861 (2) Å, are also observed.

Entities:  

Year:  2012        PMID: 22412688      PMCID: PMC3297885          DOI: 10.1107/S1600536812007088

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to chromene and its derivatives, see: Geen et al. (1996 ▶); Ercole et al. (2009 ▶); Takakazu et al. (2001 ▶). For the synthesis, see: Wen et al. (2006 ▶); Kidwai et al. (2005 ▶).

Experimental

Crystal data

C23H20ClN2O3CH3O M = 438.89 Monoclinic, a = 8.4408 (12) Å b = 26.844 (4) Å c = 10.4615 (13) Å β = 100.398 (3)° V = 2331.5 (5) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 291 K 0.28 × 0.24 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.949, T max = 0.963 12431 measured reflections 4566 independent reflections 3554 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.132 S = 1.07 4566 reflections 283 parameters 9 restraints H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007088/rz2709sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007088/rz2709Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007088/rz2709Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20ClN2O3+·CH3OF(000) = 920
Mr = 438.89Dx = 1.250 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1476 reflections
a = 8.4408 (12) Åθ = 2.6–19.7°
b = 26.844 (4) ŵ = 0.20 mm1
c = 10.4615 (13) ÅT = 291 K
β = 100.398 (3)°Block, colourless
V = 2331.5 (5) Å30.28 × 0.24 × 0.20 mm
Z = 4
Bruker SMART APEX CCD diffractometer4566 independent reflections
Radiation source: sealed tube3554 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
φ and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.949, Tmax = 0.963k = −26→33
12431 measured reflectionsl = −8→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0457P)2 + 1.6707P] where P = (Fo2 + 2Fc2)/3
4566 reflections(Δ/σ)max = 0.001
283 parametersΔρmax = 0.18 e Å3
9 restraintsΔρmin = −0.19 e Å3
Experimental. Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)7.1912 (0.0049) x + 12.2668 (0.0260) y - 4.2393 (0.0113) z = 8.2055 (0.0187)* -0.0076 (0.0019) C1 * -0.0037 (0.0019) C2 * 0.0134 (0.0020) C3 * -0.0120 (0.0019) C4 * 0.0003 (0.0019) C5 * 0.0095 (0.0020) C6Rms deviation of fitted atoms = 0.0090- 4.4632 (0.0075) x + 22.2337 (0.0159) y + 2.9074 (0.0097) z = 7.7773 (0.0151)Angle to previous plane (with approximate e.s.d.) = 83.14 (7)* -0.0358 (0.0017) C7 * 0.0190 (0.0018) C8 * 0.0065 (0.0017) C9 * -0.0138 (0.0016) O1 * -0.0093 (0.0017) C10 * 0.0334 (0.0018) C11Rms deviation of fitted atoms = 0.0227- 4.8454 (0.0082) x - 5.2426 (0.0307) y + 9.2662 (0.0059) z = 3.3249 (0.0131)Angle to previous plane (with approximate e.s.d.) = 73.18 (9)* -0.0166 (0.0021) C16 * 0.0117 (0.0020) C17 * 0.0054 (0.0019) C18 * -0.0182 (0.0020) C19 * 0.0126 (0.0020) C20 * 0.0050 (0.0021) C21Rms deviation of fitted atoms = 0.0126
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.1955 (3)0.37698 (10)1.1850 (2)0.0370 (6)
C21.2679 (3)0.38035 (10)1.3165 (3)0.0414 (6)
H21.24910.40781.36610.050*
C31.3696 (3)0.34133 (10)1.3721 (3)0.0420 (6)
H31.42150.34301.45840.050*
C41.3903 (3)0.30112 (10)1.2970 (3)0.0397 (6)
C51.3237 (3)0.29740 (10)1.1703 (3)0.0404 (6)
H51.34290.26971.12200.048*
C61.2232 (3)0.33683 (10)1.1117 (3)0.0422 (6)
H61.17670.33531.02420.051*
C71.0925 (3)0.42032 (10)1.1254 (2)0.0348 (5)
H71.06770.44141.19570.042*
C81.1785 (3)0.45122 (9)1.0401 (2)0.0335 (5)
C91.1299 (3)0.45753 (9)0.9128 (2)0.0357 (5)
C100.8945 (3)0.40928 (10)0.9150 (2)0.0371 (5)
C110.9333 (3)0.40222 (10)1.0433 (2)0.0349 (5)
C120.8178 (3)0.37688 (10)1.1067 (3)0.0395 (6)
C130.6618 (3)0.35784 (12)1.0346 (3)0.0461 (7)
H13A0.64270.32481.06590.055*
H13B0.57550.37931.05120.055*
C140.6599 (4)0.35575 (12)0.8962 (3)0.0492 (7)
H140.72590.32590.89360.059*
C150.7507 (3)0.39052 (10)0.8273 (2)0.0384 (5)
H15A0.78310.37360.75430.046*
H15B0.68210.41830.79380.046*
C160.5059 (3)0.33767 (11)0.8126 (3)0.0454 (7)
C170.3746 (3)0.37013 (10)0.7654 (3)0.0420 (6)
H170.38150.40340.79030.050*
C180.2351 (3)0.35330 (10)0.6822 (3)0.0422 (6)
H180.15020.37470.65120.051*
C190.2300 (3)0.30415 (9)0.6492 (3)0.0382 (6)
C200.3501 (3)0.27166 (10)0.6969 (3)0.0409 (6)
H200.33930.23810.67510.049*
C210.4885 (3)0.28832 (11)0.7779 (3)0.0475 (7)
H210.57040.26590.80900.057*
C221.3256 (3)0.47351 (9)1.0965 (2)0.0336 (5)
C23−0.0285 (3)0.31490 (11)0.5070 (3)0.0453 (7)
H23A−0.06930.33240.57420.068*
H23B−0.11290.29510.45810.068*
H23C0.00940.33840.45030.068*
C240.7601 (4)0.45139 (11)0.4691 (3)0.0514 (7)
H24A0.66160.44300.41180.077*
H24B0.74190.47920.52240.077*
H24C0.79640.42330.52340.077*
Cl11.51263 (8)0.25245 (3)1.36958 (7)0.04615 (19)
N11.2003 (3)0.48469 (10)0.8308 (3)0.0576 (7)
H1A1.15080.47910.74960.086*
H1B1.30350.47610.83930.086*
H1C1.19320.51690.84940.086*
N21.4468 (3)0.49159 (8)1.1468 (2)0.0406 (5)
O10.9900 (2)0.43720 (7)0.84663 (16)0.0390 (4)
O20.8398 (2)0.37310 (7)1.22654 (17)0.0427 (5)
O30.1011 (2)0.28334 (7)0.56417 (18)0.0450 (5)
O40.8804 (2)0.46438 (8)0.3939 (2)0.0527 (5)
U11U22U33U12U13U23
C10.0339 (13)0.0411 (14)0.0363 (13)−0.0051 (11)0.0073 (11)0.0039 (11)
C20.0393 (14)0.0445 (15)0.0361 (14)0.0022 (12)−0.0043 (11)0.0039 (11)
C30.0450 (15)0.0428 (15)0.0342 (13)0.0036 (12)−0.0037 (11)0.0025 (11)
C40.0350 (13)0.0454 (15)0.0416 (12)0.0154 (12)0.0149 (10)0.0110 (11)
C50.0438 (14)0.0379 (14)0.0395 (12)0.0075 (12)0.0075 (11)0.0056 (11)
C60.0412 (14)0.0376 (14)0.0425 (14)0.0144 (12)−0.0063 (11)−0.0016 (11)
C70.0243 (11)0.0400 (14)0.0390 (13)−0.0040 (10)0.0023 (10)0.0052 (11)
C80.0336 (12)0.0288 (12)0.0365 (13)0.0003 (10)0.0022 (10)0.0025 (10)
C90.0287 (12)0.0336 (13)0.0423 (14)−0.0044 (10)−0.0005 (10)−0.0013 (11)
C100.0327 (12)0.0427 (14)0.0348 (13)0.0024 (10)0.0032 (9)0.0024 (10)
C110.0294 (12)0.0444 (14)0.0324 (12)0.0032 (11)0.0091 (10)−0.0027 (11)
C120.0320 (13)0.0447 (15)0.0429 (15)−0.0038 (11)0.0095 (11)0.0070 (12)
C130.0394 (15)0.0538 (17)0.0440 (15)−0.0005 (13)0.0042 (12)0.0026 (13)
C140.0443 (15)0.0549 (17)0.0443 (16)−0.0075 (12)−0.0028 (12)0.0041 (13)
C150.0368 (12)0.0387 (14)0.0363 (13)−0.0032 (10)−0.0020 (10)0.0004 (10)
C160.0443 (15)0.0448 (16)0.0416 (15)0.0130 (12)−0.0069 (12)−0.0059 (12)
C170.0387 (13)0.0426 (15)0.0444 (15)0.0020 (11)0.0067 (11)0.0074 (12)
C180.0410 (14)0.0388 (14)0.0446 (15)−0.0056 (11)0.0023 (11)0.0068 (11)
C190.0335 (13)0.0352 (13)0.0418 (14)0.0139 (11)−0.0038 (11)−0.0037 (11)
C200.0331 (13)0.0365 (14)0.0500 (15)0.0051 (11)−0.0009 (11)0.0061 (11)
C210.0398 (14)0.0450 (16)0.0517 (16)−0.0135 (12)−0.0074 (12)0.0141 (13)
C220.0317 (13)0.0297 (12)0.0410 (13)−0.0070 (10)0.0106 (11)0.0027 (10)
C230.0370 (14)0.0477 (16)0.0441 (15)0.0007 (12)−0.0122 (11)0.0103 (12)
C240.0565 (18)0.0480 (17)0.0529 (17)0.0150 (14)0.0186 (14)0.0118 (14)
Cl10.0419 (4)0.0492 (4)0.0497 (4)0.0160 (3)0.0148 (3)0.0153 (3)
N10.0484 (14)0.0671 (17)0.0570 (15)−0.0033 (13)0.0080 (12)0.0131 (13)
N20.0376 (12)0.0419 (12)0.0391 (12)−0.0072 (10)−0.0020 (9)0.0002 (10)
O10.0356 (9)0.0435 (10)0.0372 (10)−0.0063 (8)0.0046 (7)0.0024 (8)
O20.0417 (10)0.0461 (11)0.0390 (10)−0.0109 (8)0.0037 (8)0.0156 (8)
O30.0397 (10)0.0438 (11)0.0458 (11)0.0018 (8)−0.0075 (8)0.0069 (8)
O40.0561 (12)0.0491 (12)0.0532 (12)0.0147 (10)0.0108 (10)0.0063 (9)
C1—C61.367 (4)C14—C151.476 (4)
C1—C21.404 (4)C14—C161.509 (4)
C1—C71.518 (4)C14—H140.9800
C2—C31.411 (4)C15—H15A0.9700
C2—H20.9300C15—H15B0.9700
C3—C41.365 (4)C16—C211.375 (4)
C3—H30.9300C16—C171.426 (4)
C4—C51.347 (4)C17—C181.407 (4)
C4—Cl11.751 (3)C17—H170.9300
C5—C61.424 (3)C18—C191.363 (4)
C5—H50.9300C18—H180.9300
C6—H60.9300C19—C201.362 (3)
C7—C81.499 (3)C19—O31.392 (3)
C7—C111.537 (3)C20—C211.388 (4)
C7—H70.9800C20—H200.9300
C8—C91.331 (3)C21—H210.9300
C8—C221.408 (3)C22—N21.168 (3)
C9—N11.343 (3)C23—O31.427 (3)
C9—O11.370 (3)C23—H23A0.9600
C10—C111.336 (3)C23—H23B0.9600
C10—O11.390 (3)C23—H23C0.9600
C10—C151.472 (3)C24—O41.435 (3)
C11—C121.445 (3)C24—H24A0.9600
C12—O21.238 (3)C24—H24B0.9600
C12—C131.485 (4)C24—H24C0.9600
C13—C141.446 (4)N1—H1A0.8900
C13—H13A0.9700N1—H1B0.8900
C13—H13B0.9700N1—H1C0.8900
C6—C1—C2120.8 (2)C13—C14—H1498.9
C6—C1—C7121.2 (2)C15—C14—H1498.9
C2—C1—C7118.0 (2)C16—C14—H1498.9
C1—C2—C3118.7 (3)C10—C15—C14110.8 (2)
C1—C2—H2120.6C10—C15—H15A109.5
C3—C2—H2120.6C14—C15—H15A109.5
C4—C3—C2118.8 (2)C10—C15—H15B109.5
C4—C3—H3120.6C14—C15—H15B109.5
C2—C3—H3120.6H15A—C15—H15B108.1
C5—C4—C3123.4 (2)C21—C16—C17117.3 (3)
C5—C4—Cl1118.7 (2)C21—C16—C14120.2 (3)
C3—C4—Cl1117.8 (2)C17—C16—C14122.6 (3)
C4—C5—C6118.6 (3)C18—C17—C16122.0 (3)
C4—C5—H5120.7C18—C17—H17119.0
C6—C5—H5120.7C16—C17—H17119.0
C1—C6—C5119.6 (2)C19—C18—C17116.9 (3)
C1—C6—H6120.2C19—C18—H18121.6
C5—C6—H6120.2C17—C18—H18121.6
C8—C7—C1111.4 (2)C20—C19—C18122.7 (3)
C8—C7—C11108.1 (2)C20—C19—O3114.9 (2)
C1—C7—C11111.4 (2)C18—C19—O3122.4 (2)
C8—C7—H7108.6C19—C20—C21120.4 (3)
C1—C7—H7108.6C19—C20—H20119.8
C11—C7—H7108.6C21—C20—H20119.8
C9—C8—C22117.0 (2)C16—C21—C20120.7 (3)
C9—C8—C7124.8 (2)C16—C21—H21119.7
C22—C8—C7118.1 (2)C20—C21—H21119.7
C8—C9—N1128.0 (2)N2—C22—C8178.0 (3)
C8—C9—O1122.5 (2)O3—C23—H23A109.5
N1—C9—O1109.5 (2)O3—C23—H23B109.5
C11—C10—O1122.2 (2)H23A—C23—H23B109.5
C11—C10—C15127.1 (2)O3—C23—H23C109.5
O1—C10—C15110.7 (2)H23A—C23—H23C109.5
C10—C11—C12117.7 (2)H23B—C23—H23C109.5
C10—C11—C7123.2 (2)O4—C24—H24A109.5
C12—C11—C7119.1 (2)O4—C24—H24B109.5
O2—C12—C11120.9 (2)H24A—C24—H24B109.5
O2—C12—C13116.3 (2)O4—C24—H24C109.5
C11—C12—C13122.6 (2)H24A—C24—H24C109.5
C14—C13—C12111.8 (2)H24B—C24—H24C109.5
C14—C13—H13A109.3C9—N1—H1A109.5
C12—C13—H13A109.3C9—N1—H1B109.5
C14—C13—H13B109.3H1A—N1—H1B109.5
C12—C13—H13B109.3C9—N1—H1C109.5
H13A—C13—H13B107.9H1A—N1—H1C109.5
C13—C14—C15123.5 (3)H1B—N1—H1C109.5
C13—C14—C16116.5 (3)C9—O1—C10118.80 (19)
C15—C14—C16112.9 (2)C19—O3—C23118.8 (2)
C6—C1—C2—C3−0.2 (4)C7—C11—C12—O25.7 (4)
C7—C1—C2—C3−177.4 (2)C10—C11—C12—C131.3 (4)
C1—C2—C3—C4−1.8 (4)C7—C11—C12—C13−179.5 (2)
C2—C3—C4—C52.7 (4)O2—C12—C13—C14−169.7 (3)
C2—C3—C4—Cl1−178.2 (2)C11—C12—C13—C1415.3 (4)
C3—C4—C5—C6−1.5 (4)C12—C13—C14—C15−30.8 (4)
Cl1—C4—C5—C6179.5 (2)C12—C13—C14—C16−179.1 (2)
C2—C1—C6—C51.4 (4)C11—C10—C15—C14−7.9 (4)
C7—C1—C6—C5178.5 (2)O1—C10—C15—C14172.8 (2)
C4—C5—C6—C1−0.6 (4)C13—C14—C15—C1027.5 (4)
C6—C1—C7—C8−72.7 (3)C16—C14—C15—C10176.7 (2)
C2—C1—C7—C8104.4 (3)C13—C14—C16—C21−94.4 (4)
C6—C1—C7—C1148.2 (3)C15—C14—C16—C21114.1 (3)
C2—C1—C7—C11−134.7 (2)C13—C14—C16—C1786.3 (4)
C1—C7—C8—C9117.3 (3)C15—C14—C16—C17−65.2 (4)
C11—C7—C8—C9−5.5 (3)C21—C16—C17—C18−2.6 (4)
C1—C7—C8—C22−59.6 (3)C14—C16—C17—C18176.7 (3)
C11—C7—C8—C22177.6 (2)C16—C17—C18—C190.5 (4)
C22—C8—C9—N1−3.3 (4)C17—C18—C19—C202.4 (4)
C7—C8—C9—N1179.7 (3)C17—C18—C19—O3−177.8 (2)
C22—C8—C9—O1179.2 (2)C18—C19—C20—C21−3.1 (4)
C7—C8—C9—O12.3 (4)O3—C19—C20—C21177.0 (3)
O1—C10—C11—C12173.9 (2)C17—C16—C21—C201.9 (4)
C15—C10—C11—C12−5.3 (4)C14—C16—C21—C20−177.4 (3)
O1—C10—C11—C7−5.2 (4)C19—C20—C21—C160.8 (4)
C15—C10—C11—C7175.6 (2)C8—C9—O1—C100.6 (4)
C8—C7—C11—C106.9 (3)N1—C9—O1—C10−177.3 (2)
C1—C7—C11—C10−115.9 (3)C11—C10—O1—C91.0 (4)
C8—C7—C11—C12−172.2 (2)C15—C10—O1—C9−179.7 (2)
C1—C7—C11—C1265.0 (3)C20—C19—O3—C23−178.5 (2)
C10—C11—C12—O2−173.5 (3)C18—C19—O3—C231.6 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4i0.892.122.698 (4)122
N1—H1B···N2ii0.892.263.014 (5)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.892.122.698 (4)122
N1—H1B⋯N2ii0.892.263.014 (5)142

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Aqua mediated synthesis of substituted 2-amino-4H-chromenes and in vitro study as antibacterial agents.

Authors:  Mazaahir Kidwai; Shilpi Saxena; M Khalilur Rahman Khan; Sharanjit S Thukral
Journal:  Bioorg Med Chem Lett       Date:  2005-10-01       Impact factor: 2.823

  2 in total
  2 in total

1.  4-(4-Bromo-phen-yl)-2-methyl-amino-3-nitro-5,6,7,8-tetra-hydro-4H-chromen-5-one.

Authors:  P Narayanan; Jayabal Kamalraja; Paramasivam T Perumal; K Sethusankar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-22

2.  rac-4-(4-Chloro-phen-yl)-2-methyl-amino-3-nitro-5,6,7,8-tetra-hydro-4H-chromen-5-one.

Authors:  P Narayanan; Jayabal Kamalraja; Paramasivam T Perumal; K Sethusankar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08
  2 in total

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