Literature DB >> 24046624

Ethyl 4-acetyl-5-anilino-3-methyl-thio-phene-2-carboxyl-ate.

Yahia Nasser Mabkhot1, Fatima Alatibi, Assem Barakat, M Iqbal Choudhary, Sammer Yousuf.   

Abstract

In the title compound, C16H17NO3S, a thio-phene derivative with amino phenyl, acetyl, methyl and ethyl carboxyl susbtituents attached to a central thio-phene ring, the phenyl and thio-phene rings form a dihedral angle of 36.92 (9) Å. The mol-ecular conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond, which forms an S(6) ring motif.

Entities:  

Year:  2013        PMID: 24046624      PMCID: PMC3772481          DOI: 10.1107/S160053681301547X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­phene derivatives, see: Mishra et al. (2011 ▶); Mabkhot et al. (2013b ▶). For the synthesis of fused heterocyclic compounds, see: Sommen et al. (2003 ▶). For crystal data for related thio­phene compounds, see: Mabkhot et al. (2013a ▶,b ▶); Buehrdel et al. (2007 ▶).

Experimental

Crystal data

C16H17NO3S M = 303.37 Triclinic, a = 7.9443 (6) Å b = 9.5038 (7) Å c = 11.8706 (9) Å α = 66.759 (2)° β = 89.754 (2)° γ = 66.785 (2)° V = 744.60 (10) Å3 Z = 2 Mo Kα radiation μ = 0.23 mm−1 T = 273 K 0.45 × 0.42 × 0.23 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.905, T max = 0.950 10410 measured reflections 3699 independent reflections 2848 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.126 S = 1.05 3699 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681301547X/rz5071sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301547X/rz5071Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301547X/rz5071Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17NO3SZ = 2
Mr = 303.37F(000) = 320
Triclinic, P1Dx = 1.353 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9443 (6) ÅCell parameters from 2619 reflections
b = 9.5038 (7) Åθ = 2.5–25.8°
c = 11.8706 (9) ŵ = 0.23 mm1
α = 66.759 (2)°T = 273 K
β = 89.754 (2)°Block, yellow
γ = 66.785 (2)°0.45 × 0.42 × 0.23 mm
V = 744.60 (10) Å3
Bruker SMART APEX CCD area-detector diffractometer3699 independent reflections
Radiation source: fine-focus sealed tube2848 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω scanθmax = 28.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.905, Tmax = 0.950k = −12→12
10410 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0618P)2 + 0.0954P] where P = (Fo2 + 2Fc2)/3
3699 reflections(Δ/σ)max < 0.001
194 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.48333 (6)0.26835 (5)−0.00730 (4)0.04325 (15)
O10.8347 (2)0.01329 (18)−0.22852 (13)0.0685 (4)
O20.6413 (2)−0.06433 (17)0.34080 (12)0.0704 (5)
O30.41944 (19)0.19842 (16)0.23323 (11)0.0546 (3)
N10.5630 (2)0.2832 (2)−0.23190 (14)0.0483 (4)
C20.6046 (2)0.1930 (2)−0.10687 (15)0.0404 (4)
C30.7453 (2)0.0270 (2)−0.04358 (15)0.0407 (4)
C40.7482 (2)−0.0370 (2)0.08869 (15)0.0394 (4)
C50.6149 (2)0.0774 (2)0.12066 (15)0.0419 (4)
C60.5653 (3)0.0580 (2)0.24344 (16)0.0475 (4)
C70.3506 (3)0.1937 (3)0.34727 (19)0.0634 (6)
H7A0.45030.16390.41110.076*
H7B0.29960.11090.37760.076*
C80.2028 (3)0.3670 (3)0.3158 (2)0.0728 (6)
H8A0.15260.37020.38890.109*
H8B0.10540.39480.25240.109*
H8C0.25530.44750.28580.109*
C90.8800 (3)−0.2083 (2)0.18489 (17)0.0539 (5)
H9A0.8528−0.21970.26610.081*
H9B1.0055−0.22050.18200.081*
H9C0.8659−0.29440.16820.081*
C100.8559 (2)−0.0600 (2)−0.11438 (17)0.0466 (4)
C110.9989 (3)−0.2421 (3)−0.0534 (2)0.0605 (5)
H11A1.0558−0.2749−0.11590.091*
H11B0.9394−0.3133−0.01020.091*
H11C1.0925−0.25380.00490.091*
C120.4166 (2)0.4428 (2)−0.30492 (15)0.0435 (4)
C130.3570 (3)0.5761 (2)−0.27179 (18)0.0536 (5)
H13A0.40970.5614−0.19580.064*
C140.2190 (3)0.7316 (2)−0.3516 (2)0.0640 (6)
H14A0.17810.8210−0.32860.077*
C150.1418 (3)0.7551 (3)−0.4643 (2)0.0665 (6)
H15A0.05010.8603−0.51810.080*
C160.2008 (3)0.6224 (3)−0.49714 (19)0.0653 (6)
H16A0.14840.6380−0.57350.078*
C170.3366 (3)0.4667 (2)−0.41818 (17)0.0540 (5)
H17A0.37500.3772−0.44090.065*
H1A0.627 (3)0.228 (3)−0.267 (2)0.058 (6)*
U11U22U33U12U13U23
S10.0447 (3)0.0347 (2)0.0357 (2)−0.00843 (18)0.00177 (18)−0.00958 (17)
O10.0810 (10)0.0576 (9)0.0452 (8)−0.0093 (8)0.0116 (7)−0.0217 (7)
O20.0924 (11)0.0462 (8)0.0366 (7)−0.0056 (7)0.0057 (7)−0.0072 (6)
O30.0653 (8)0.0428 (7)0.0390 (7)−0.0107 (6)0.0109 (6)−0.0139 (6)
N10.0532 (9)0.0401 (8)0.0330 (8)−0.0071 (7)0.0017 (7)−0.0105 (6)
C20.0419 (9)0.0394 (9)0.0344 (8)−0.0161 (7)0.0013 (7)−0.0119 (7)
C30.0382 (9)0.0379 (8)0.0387 (9)−0.0121 (7)0.0011 (7)−0.0136 (7)
C40.0379 (8)0.0348 (8)0.0369 (8)−0.0121 (7)−0.0019 (7)−0.0105 (7)
C50.0459 (9)0.0357 (8)0.0331 (8)−0.0132 (7)−0.0013 (7)−0.0084 (7)
C60.0573 (11)0.0370 (9)0.0381 (9)−0.0144 (8)0.0025 (8)−0.0121 (7)
C70.0785 (15)0.0569 (12)0.0454 (11)−0.0198 (11)0.0207 (10)−0.0223 (10)
C80.0731 (15)0.0667 (14)0.0759 (16)−0.0192 (12)0.0235 (13)−0.0386 (13)
C90.0515 (11)0.0418 (10)0.0426 (10)−0.0044 (8)−0.0029 (8)−0.0090 (8)
C100.0447 (10)0.0452 (10)0.0461 (10)−0.0156 (8)0.0045 (8)−0.0194 (8)
C110.0581 (12)0.0510 (11)0.0601 (13)−0.0085 (9)0.0104 (10)−0.0268 (10)
C120.0440 (9)0.0390 (9)0.0351 (9)−0.0153 (7)0.0041 (7)−0.0065 (7)
C130.0664 (13)0.0430 (10)0.0415 (10)−0.0210 (9)−0.0020 (9)−0.0107 (8)
C140.0776 (15)0.0396 (10)0.0563 (13)−0.0154 (10)0.0040 (11)−0.0126 (9)
C150.0637 (13)0.0466 (11)0.0528 (12)−0.0064 (10)−0.0046 (10)−0.0034 (9)
C160.0684 (14)0.0613 (13)0.0417 (11)−0.0148 (11)−0.0086 (10)−0.0112 (10)
C170.0619 (12)0.0493 (10)0.0368 (10)−0.0146 (9)0.0011 (8)−0.0140 (8)
S1—C21.7182 (18)C8—H8C0.9600
S1—C51.7422 (16)C9—H9A0.9600
O1—C101.230 (2)C9—H9B0.9600
O2—C61.202 (2)C9—H9C0.9600
O3—C61.339 (2)C10—C111.509 (3)
O3—C71.449 (2)C11—H11A0.9600
N1—C21.350 (2)C11—H11B0.9600
N1—C121.409 (2)C11—H11C0.9600
N1—H1A0.82 (2)C12—C131.379 (3)
C2—C31.409 (2)C12—C171.384 (3)
C3—C41.439 (2)C13—C141.382 (3)
C3—C101.460 (2)C13—H13A0.9300
C4—C51.365 (2)C14—C151.371 (3)
C4—C91.500 (2)C14—H14A0.9300
C5—C61.468 (2)C15—C161.372 (3)
C7—C81.491 (3)C15—H15A0.9300
C7—H7A0.9700C16—C171.374 (3)
C7—H7B0.9700C16—H16A0.9300
C8—H8A0.9600C17—H17A0.9300
C8—H8B0.9600
C2—S1—C591.06 (8)C4—C9—H9B109.5
C6—O3—C7116.03 (14)H9A—C9—H9B109.5
C2—N1—C12129.39 (17)C4—C9—H9C109.5
C2—N1—H1A111.3 (15)H9A—C9—H9C109.5
C12—N1—H1A118.8 (15)H9B—C9—H9C109.5
N1—C2—C3124.72 (16)O1—C10—C3120.70 (17)
N1—C2—S1122.77 (13)O1—C10—C11116.71 (17)
C3—C2—S1112.47 (12)C3—C10—C11122.59 (17)
C2—C3—C4111.16 (15)C10—C11—H11A109.5
C2—C3—C10119.78 (15)C10—C11—H11B109.5
C4—C3—C10128.91 (15)H11A—C11—H11B109.5
C5—C4—C3112.44 (14)C10—C11—H11C109.5
C5—C4—C9121.66 (16)H11A—C11—H11C109.5
C3—C4—C9125.89 (16)H11B—C11—H11C109.5
C4—C5—C6129.30 (15)C13—C12—C17119.32 (16)
C4—C5—S1112.85 (13)C13—C12—N1123.40 (16)
C6—C5—S1117.80 (13)C17—C12—N1117.20 (17)
O2—C6—O3123.37 (17)C12—C13—C14119.95 (18)
O2—C6—C5126.39 (17)C12—C13—H13A120.0
O3—C6—C5110.24 (14)C14—C13—H13A120.0
O3—C7—C8106.38 (17)C15—C14—C13120.5 (2)
O3—C7—H7A110.5C15—C14—H14A119.8
C8—C7—H7A110.5C13—C14—H14A119.8
O3—C7—H7B110.5C14—C15—C16119.61 (19)
C8—C7—H7B110.5C14—C15—H15A120.2
H7A—C7—H7B108.6C16—C15—H15A120.2
C7—C8—H8A109.5C15—C16—C17120.50 (19)
C7—C8—H8B109.5C15—C16—H16A119.7
H8A—C8—H8B109.5C17—C16—H16A119.7
C7—C8—H8C109.5C16—C17—C12120.15 (19)
H8A—C8—H8C109.5C16—C17—H17A119.9
H8B—C8—H8C109.5C12—C17—H17A119.9
C4—C9—H9A109.5
C12—N1—C2—C3174.03 (18)C4—C5—C6—O23.2 (3)
C12—N1—C2—S1−3.6 (3)S1—C5—C6—O2−179.74 (17)
C5—S1—C2—N1176.62 (16)C4—C5—C6—O3−176.76 (17)
C5—S1—C2—C3−1.28 (14)S1—C5—C6—O30.3 (2)
N1—C2—C3—C4−176.94 (17)C6—O3—C7—C8174.54 (18)
S1—C2—C3—C40.91 (19)C2—C3—C10—O14.0 (3)
N1—C2—C3—C10−1.0 (3)C4—C3—C10—O1179.20 (18)
S1—C2—C3—C10176.89 (13)C2—C3—C10—C11−175.38 (17)
C2—C3—C4—C50.1 (2)C4—C3—C10—C11−0.2 (3)
C10—C3—C4—C5−175.39 (17)C2—N1—C12—C1339.8 (3)
C2—C3—C4—C9−179.55 (16)C2—N1—C12—C17−143.5 (2)
C10—C3—C4—C94.9 (3)C17—C12—C13—C14−0.1 (3)
C3—C4—C5—C6176.08 (18)N1—C12—C13—C14176.61 (18)
C9—C4—C5—C6−4.2 (3)C12—C13—C14—C15−0.7 (3)
C3—C4—C5—S1−1.09 (19)C13—C14—C15—C160.8 (4)
C9—C4—C5—S1178.60 (14)C14—C15—C16—C17−0.2 (4)
C2—S1—C5—C41.37 (14)C15—C16—C17—C12−0.6 (3)
C2—S1—C5—C6−176.16 (15)C13—C12—C17—C160.7 (3)
C7—O3—C6—O2−2.5 (3)N1—C12—C17—C16−176.19 (19)
C7—O3—C6—C5177.47 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.82 (3)1.93 (3)2.607 (3)140 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O10.82 (3)1.93 (3)2.607 (3)140 (2)
  4 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-Ethyl 2-anilino-5-[3-(dimethyl-amino)-acrylo-yl]-4-phenyl-thio-phene-3-carboxyl-ate.

Authors:  Yahia Nasser Mabkhot; Assem Barakat; Fatima Alatibi; M Iqbal Choudhary; Sammer Yousuf
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-06

3.  Synthesis of Thieno[2,3-b]thiophene Containing Bis-Heterocycles-Novel Pharmacophores.

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Journal:  Int J Mol Sci       Date:  2013-03-12       Impact factor: 5.923

4.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
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1.  Ethyl 3-amino-5-anilino-4-cyano-thio-phene-2-carboxyl-ate.

Authors:  Ahmed M M El-Saghier; Mehmet Akkurt; Shaaban K Mohamed; Peter N Horton; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13
  1 in total

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