Literature DB >> 23476543

(E)-Ethyl 2-anilino-5-[3-(dimethyl-amino)-acrylo-yl]-4-phenyl-thio-phene-3-carboxyl-ate.

Yahia Nasser Mabkhot1, Assem Barakat, Fatima Alatibi, M Iqbal Choudhary, Sammer Yousuf.   

Abstract

In the title compound, C24H24N2O3S, the phenyl rings form dihedral angles of 55.65 (11) and 79.60 (11)° with the plane of the thio-phene ring. The mol-ecular conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond, generating an S(6) ring motif. In the crystal, centrosymmetrically related mol-ecules are linked into dimers by two pairs of C-H⋯O inter-actions.

Entities:  

Year:  2013        PMID: 23476543      PMCID: PMC3588423          DOI: 10.1107/S1600536813003231

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to biological activity of thio­phene derivatives see: Mishra et al. (2011 ▶). For the synthesis of different thio­phene derivatives, see: Mabkhot et al. (2011 ▶); Mabkhot, Barakat & Alshahrani (2012 ▶); Mabkhot, Barakat, Al-Majid, Alamary & Al-Nahary (2012 ▶); Mabkhot, Barakat, Al-Majid & Alshahrani (2012 ▶). For related structures, see: Cao et al. (2003 ▶).

Experimental

Crystal data

C24H24N2O3S M = 420.51 Triclinic, a = 6.5776 (9) Å b = 10.7119 (14) Å c = 16.516 (2) Å α = 78.459 (3)° β = 79.743 (3)° γ = 80.765 (3)° V = 1112.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 273 K 0.28 × 0.27 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.953, T max = 0.970 12618 measured reflections 4123 independent reflections 3373 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.142 S = 1.05 4123 reflections 272 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813003231/rz5041sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813003231/rz5041Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813003231/rz5041Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H24N2O3SZ = 2
Mr = 420.51F(000) = 444
Triclinic, P1Dx = 1.255 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.5776 (9) ÅCell parameters from 4320 reflections
b = 10.7119 (14) Åθ = 1.3–25.5°
c = 16.516 (2) ŵ = 0.17 mm1
α = 78.459 (3)°T = 273 K
β = 79.743 (3)°Block, yellow
γ = 80.765 (3)°0.28 × 0.27 × 0.18 mm
V = 1112.5 (3) Å3
Bruker SMART APEX CCD area-detector diffractometer4123 independent reflections
Radiation source: fine-focus sealed tube3373 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
ω scanθmax = 25.5°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −7→7
Tmin = 0.953, Tmax = 0.970k = −12→12
12618 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.142w = 1/[σ2(Fo2) + (0.0761P)2 + 0.2541P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
4123 reflectionsΔρmax = 0.27 e Å3
272 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.004 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.88423 (8)0.46635 (5)0.24436 (3)0.0586 (2)
O10.9061 (3)0.04813 (14)0.16466 (10)0.0714 (4)
O21.1246 (3)0.16911 (16)0.07700 (11)0.0837 (5)
O30.5995 (3)0.49861 (18)0.38688 (12)0.0932 (6)
N11.1535 (3)0.40198 (17)0.11137 (11)0.0613 (5)
H1A1.19710.35050.07630.074*
N20.0937 (3)0.31677 (18)0.51004 (11)0.0648 (5)
C11.2694 (3)0.5907 (2)0.01997 (14)0.0666 (6)
H1B1.21360.5698−0.02280.080*
C21.3713 (4)0.6972 (2)0.00528 (18)0.0797 (7)
H2B1.38390.7481−0.04760.096*
C31.4536 (4)0.7293 (2)0.0667 (2)0.0851 (8)
H3A1.52330.80120.05580.102*
C41.4336 (4)0.6544 (3)0.14570 (19)0.0851 (8)
H4A1.48810.67670.18830.102*
C51.3326 (3)0.5465 (2)0.16131 (16)0.0712 (6)
H5A1.32050.49550.21420.085*
C61.2499 (3)0.51465 (19)0.09836 (14)0.0572 (5)
C70.9978 (3)0.36762 (18)0.17430 (12)0.0511 (5)
C80.9084 (3)0.25406 (17)0.18880 (11)0.0488 (4)
C90.7401 (3)0.25055 (17)0.25779 (11)0.0464 (4)
C100.6210 (3)0.13903 (17)0.28969 (11)0.0477 (4)
C110.4610 (3)0.1211 (2)0.25139 (14)0.0670 (6)
H11A0.42470.17990.20500.080*
C120.3543 (4)0.0164 (3)0.28151 (19)0.0899 (8)
H12A0.24580.00510.25560.108*
C130.4077 (5)−0.0709 (3)0.34945 (19)0.0919 (9)
H13A0.3382−0.14270.36880.110*
C140.5630 (5)−0.0524 (2)0.38873 (17)0.0837 (8)
H14A0.5969−0.11050.43580.100*
C150.6697 (4)0.0519 (2)0.35904 (14)0.0652 (6)
H15A0.77580.06370.38610.078*
C160.7077 (3)0.35877 (18)0.29284 (12)0.0510 (5)
C170.5610 (3)0.4031 (2)0.36344 (13)0.0592 (5)
C180.3834 (3)0.33914 (19)0.39894 (13)0.0560 (5)
H18A0.34610.28000.37180.067*
C190.2683 (3)0.3641 (2)0.47208 (13)0.0578 (5)
H19A0.31650.42010.49840.069*
C200.0008 (4)0.2328 (3)0.47236 (17)0.0910 (9)
H20A0.07540.22770.41730.136*
H20B−0.14220.26650.46870.136*
H20C0.00780.14860.50610.136*
C21−0.0001 (4)0.3365 (3)0.59369 (16)0.0827 (7)
H21A0.07540.39260.61200.124*
H21B0.00490.25540.63110.124*
H21C−0.14240.37450.59330.124*
C220.9907 (3)0.15623 (19)0.13755 (13)0.0578 (5)
C230.9697 (5)−0.0552 (2)0.11770 (18)0.0968 (9)
H23A0.9220−0.03060.06370.116*
H23B1.1205−0.07320.10830.116*
C240.8828 (6)−0.1672 (3)0.1632 (2)0.1179 (12)
H24A0.9261−0.23630.13240.177*
H24B0.7335−0.14940.17130.177*
H24C0.9302−0.19100.21660.177*
U11U22U33U12U13U23
S10.0597 (3)0.0517 (3)0.0638 (3)−0.0230 (2)0.0070 (2)−0.0104 (2)
O10.0851 (11)0.0547 (8)0.0723 (10)−0.0266 (8)0.0191 (8)−0.0197 (7)
O20.0937 (12)0.0687 (10)0.0789 (11)−0.0259 (9)0.0347 (9)−0.0200 (8)
O30.1033 (13)0.0889 (12)0.0949 (13)−0.0538 (11)0.0363 (10)−0.0462 (10)
N10.0593 (10)0.0572 (10)0.0626 (10)−0.0223 (8)0.0135 (8)−0.0077 (8)
N20.0615 (10)0.0710 (11)0.0586 (10)−0.0229 (9)0.0085 (8)−0.0076 (9)
C10.0562 (12)0.0691 (14)0.0638 (13)−0.0128 (10)0.0044 (10)0.0052 (11)
C20.0621 (14)0.0681 (15)0.0893 (18)−0.0143 (12)0.0089 (13)0.0193 (13)
C30.0613 (14)0.0622 (14)0.121 (2)−0.0241 (11)0.0048 (15)0.0067 (15)
C40.0691 (15)0.0835 (17)0.106 (2)−0.0331 (13)−0.0149 (14)−0.0050 (15)
C50.0605 (13)0.0720 (14)0.0771 (15)−0.0246 (11)−0.0114 (11)0.0097 (12)
C60.0418 (10)0.0529 (11)0.0688 (13)−0.0110 (8)0.0034 (9)0.0015 (9)
C70.0478 (10)0.0496 (10)0.0522 (10)−0.0124 (8)−0.0020 (8)−0.0007 (8)
C80.0486 (10)0.0471 (10)0.0484 (10)−0.0126 (8)−0.0014 (8)−0.0030 (8)
C90.0460 (10)0.0475 (10)0.0444 (9)−0.0119 (8)−0.0062 (8)−0.0009 (8)
C100.0478 (10)0.0465 (10)0.0466 (10)−0.0121 (8)−0.0008 (8)−0.0041 (8)
C110.0658 (13)0.0723 (14)0.0640 (13)−0.0282 (11)−0.0150 (11)0.0052 (11)
C120.0818 (17)0.099 (2)0.0988 (19)−0.0515 (15)−0.0179 (15)−0.0043 (16)
C130.097 (2)0.0732 (16)0.103 (2)−0.0499 (15)0.0031 (17)0.0069 (15)
C140.101 (2)0.0623 (14)0.0775 (16)−0.0230 (14)−0.0109 (15)0.0192 (12)
C150.0724 (14)0.0579 (12)0.0632 (13)−0.0174 (10)−0.0158 (11)0.0062 (10)
C160.0487 (10)0.0520 (11)0.0513 (10)−0.0174 (8)−0.0003 (8)−0.0048 (8)
C170.0621 (12)0.0575 (12)0.0577 (12)−0.0190 (10)0.0036 (10)−0.0117 (9)
C180.0569 (12)0.0549 (11)0.0556 (11)−0.0150 (9)0.0013 (9)−0.0106 (9)
C190.0581 (12)0.0532 (11)0.0594 (12)−0.0149 (9)0.0022 (9)−0.0071 (9)
C200.0783 (17)0.130 (2)0.0743 (16)−0.0554 (17)−0.0024 (13)−0.0165 (16)
C210.0838 (17)0.0813 (16)0.0765 (16)−0.0251 (13)0.0255 (13)−0.0201 (13)
C220.0592 (12)0.0525 (11)0.0578 (12)−0.0138 (9)0.0019 (10)−0.0049 (9)
C230.135 (3)0.0640 (15)0.0864 (18)−0.0254 (16)0.0287 (17)−0.0319 (13)
C240.144 (3)0.0774 (19)0.135 (3)−0.0471 (19)0.028 (2)−0.0445 (19)
S1—C71.716 (2)C10—C151.376 (3)
S1—C161.7454 (18)C10—C111.376 (3)
O1—C221.327 (2)C11—C121.380 (3)
O1—C231.443 (3)C11—H11A0.9300
O2—C221.211 (2)C12—C131.368 (4)
O3—C171.240 (2)C12—H12A0.9300
N1—C71.361 (2)C13—C141.362 (4)
N1—C61.414 (3)C13—H13A0.9300
N1—H1A0.8600C14—C151.375 (3)
N2—C191.332 (3)C14—H14A0.9300
N2—C201.451 (3)C15—H15A0.9300
N2—C211.451 (3)C16—C171.480 (3)
C1—C21.374 (3)C17—C181.425 (3)
C1—C61.381 (3)C18—C191.357 (3)
C1—H1B0.9300C18—H18A0.9300
C2—C31.354 (4)C19—H19A0.9300
C2—H2B0.9300C20—H20A0.9600
C3—C41.385 (4)C20—H20B0.9600
C3—H3A0.9300C20—H20C0.9600
C4—C51.382 (3)C21—H21A0.9600
C4—H4A0.9300C21—H21B0.9600
C5—C61.377 (3)C21—H21C0.9600
C5—H5A0.9300C23—C241.426 (4)
C7—C81.395 (3)C23—H23A0.9700
C8—C91.440 (2)C23—H23B0.9700
C8—C221.455 (3)C24—H24A0.9600
C9—C161.367 (3)C24—H24B0.9600
C9—C101.490 (2)C24—H24C0.9600
C7—S1—C1691.40 (9)C12—C13—H13A120.1
C22—O1—C23118.51 (17)C13—C14—C15120.2 (2)
C7—N1—C6125.94 (18)C13—C14—H14A119.9
C7—N1—H1A117.0C15—C14—H14A119.9
C6—N1—H1A117.0C14—C15—C10120.6 (2)
C19—N2—C20120.91 (19)C14—C15—H15A119.7
C19—N2—C21121.6 (2)C10—C15—H15A119.7
C20—N2—C21117.18 (19)C9—C16—C17134.44 (18)
C2—C1—C6119.8 (2)C9—C16—S1112.14 (14)
C2—C1—H1B120.1C17—C16—S1113.40 (14)
C6—C1—H1B120.1O3—C17—C18123.6 (2)
C3—C2—C1121.0 (2)O3—C17—C16116.37 (18)
C3—C2—H2B119.5C18—C17—C16120.04 (18)
C1—C2—H2B119.5C19—C18—C17120.38 (19)
C2—C3—C4119.7 (2)C19—C18—H18A119.8
C2—C3—H3A120.2C17—C18—H18A119.8
C4—C3—H3A120.2N2—C19—C18126.8 (2)
C5—C4—C3120.0 (3)N2—C19—H19A116.6
C5—C4—H4A120.0C18—C19—H19A116.6
C3—C4—H4A120.0N2—C20—H20A109.5
C6—C5—C4119.8 (2)N2—C20—H20B109.5
C6—C5—H5A120.1H20A—C20—H20B109.5
C4—C5—H5A120.1N2—C20—H20C109.5
C5—C6—C1119.7 (2)H20A—C20—H20C109.5
C5—C6—N1121.13 (19)H20B—C20—H20C109.5
C1—C6—N1119.1 (2)N2—C21—H21A109.5
N1—C7—C8125.77 (18)N2—C21—H21B109.5
N1—C7—S1121.90 (15)H21A—C21—H21B109.5
C8—C7—S1112.31 (14)N2—C21—H21C109.5
C7—C8—C9111.73 (17)H21A—C21—H21C109.5
C7—C8—C22120.01 (17)H21B—C21—H21C109.5
C9—C8—C22128.25 (17)O2—C22—O1122.38 (19)
C16—C9—C8112.39 (16)O2—C22—C8124.57 (19)
C16—C9—C10123.85 (17)O1—C22—C8113.04 (17)
C8—C9—C10123.71 (16)C24—C23—O1109.3 (2)
C15—C10—C11118.77 (18)C24—C23—H23A109.8
C15—C10—C9119.88 (17)O1—C23—H23A109.8
C11—C10—C9121.34 (17)C24—C23—H23B109.8
C10—C11—C12120.3 (2)O1—C23—H23B109.8
C10—C11—H11A119.8H23A—C23—H23B108.3
C12—C11—H11A119.8C23—C24—H24A109.5
C13—C12—C11120.2 (2)C23—C24—H24B109.5
C13—C12—H12A119.9H24A—C24—H24B109.5
C11—C12—H12A119.9C23—C24—H24C109.5
C14—C13—C12119.8 (2)H24A—C24—H24C109.5
C14—C13—H13A120.1H24B—C24—H24C109.5
C6—C1—C2—C30.0 (4)C10—C11—C12—C13−0.4 (4)
C1—C2—C3—C4−0.6 (4)C11—C12—C13—C141.8 (5)
C2—C3—C4—C51.0 (4)C12—C13—C14—C15−1.7 (5)
C3—C4—C5—C6−0.8 (4)C13—C14—C15—C100.2 (4)
C4—C5—C6—C10.2 (3)C11—C10—C15—C141.1 (3)
C4—C5—C6—N1177.3 (2)C9—C10—C15—C14−179.2 (2)
C2—C1—C6—C50.2 (3)C8—C9—C16—C17−179.4 (2)
C2—C1—C6—N1−177.0 (2)C10—C9—C16—C17−1.9 (4)
C7—N1—C6—C552.8 (3)C8—C9—C16—S1−1.2 (2)
C7—N1—C6—C1−130.1 (2)C10—C9—C16—S1176.24 (14)
C6—N1—C7—C8−177.4 (2)C7—S1—C16—C91.72 (16)
C6—N1—C7—S14.4 (3)C7—S1—C16—C17−179.70 (16)
C16—S1—C7—N1176.63 (17)C9—C16—C17—O3168.0 (2)
C16—S1—C7—C8−1.78 (16)S1—C16—C17—O3−10.2 (3)
N1—C7—C8—C9−176.91 (18)C9—C16—C17—C18−13.9 (4)
S1—C7—C8—C91.4 (2)S1—C16—C17—C18167.92 (16)
N1—C7—C8—C224.2 (3)O3—C17—C18—C19−13.4 (4)
S1—C7—C8—C22−177.48 (15)C16—C17—C18—C19168.64 (19)
C7—C8—C9—C16−0.1 (2)C20—N2—C19—C18−2.6 (4)
C22—C8—C9—C16178.68 (19)C21—N2—C19—C18171.4 (2)
C7—C8—C9—C10−177.58 (17)C17—C18—C19—N2176.3 (2)
C22—C8—C9—C101.2 (3)C23—O1—C22—O2−3.0 (4)
C16—C9—C10—C15−78.4 (3)C23—O1—C22—C8178.1 (2)
C8—C9—C10—C1598.8 (2)C7—C8—C22—O2−6.2 (3)
C16—C9—C10—C11101.3 (2)C9—C8—C22—O2175.1 (2)
C8—C9—C10—C11−81.5 (3)C7—C8—C22—O1172.74 (18)
C15—C10—C11—C12−1.0 (4)C9—C8—C22—O1−6.0 (3)
C9—C10—C11—C12179.3 (2)C22—O1—C23—C24172.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O20.862.072.709 (3)130
C19—H19A···O3i0.932.423.294 (3)157
C21—H21A···O3i0.962.603.491 (4)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O20.862.072.709 (3)130
C19—H19A⋯O3i 0.932.423.294 (3)157
C21—H21A⋯O3i 0.962.603.491 (4)155

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Comprehensive and facile synthesis of some functionalized bis-heterocyclic compounds containing a thieno[2,3-b]thiophene motif.

Authors:  Yahia N Mabkhot; Assem Barakat; Abdullah M Al-Majid; Saeed A Alshahrani
Journal:  Int J Mol Sci       Date:  2012-02-20       Impact factor: 6.208

3.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

1.  Ethyl 4-acetyl-5-anilino-3-methyl-thio-phene-2-carboxyl-ate.

Authors:  Yahia Nasser Mabkhot; Fatima Alatibi; Assem Barakat; M Iqbal Choudhary; Sammer Yousuf
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08

2.  Synthesis and Structure-Activity Relationship of Some New Thiophene-Based Heterocycles as Potential Antimicrobial Agents.

Authors:  Yahia Nasser Mabkhot; Fatima Alatibi; Nahed Nasser E El-Sayed; Nabila Abdelshafy Kheder; Salim S Al-Showiman
Journal:  Molecules       Date:  2016-08-09       Impact factor: 4.411

  2 in total

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