Literature DB >> 24109334

Ethyl 3-amino-5-anilino-4-cyano-thio-phene-2-carboxyl-ate.

Ahmed M M El-Saghier1, Mehmet Akkurt, Shaaban K Mohamed, Peter N Horton, Mustafa R Albayati.   

Abstract

In the title compound, C14H13N3O2S, the dihedral angle between the thio-phene and phenyl rings is 24.95 (8)°. The mol-ecular structure is consolidated by intra-molecular N-H⋯O and C-H⋯S inter-actions. The crystal structure features N-H⋯N and N-H⋯O hydrogen bonds forming centrosymmetric R 2 (2)(12) dimers, which are linked into a two-dimensional network parallel to (011) with an S(6)R 2 (2) S(6) motif. In addition, π-π stacking inter-actions [centroid-centroid distance = 3.7013 (12) Å] occur between the thio-phene and phenyl rings of adjacent mol-ecules.

Entities:  

Year:  2013        PMID: 24109334      PMCID: PMC3793747          DOI: 10.1107/S1600536813018734

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmaceutical and industrial applications of amino-thio­phene-containingg compounds, see: Inversen et al. (2000 ▶); Webb et al. (2000 ▶). For the synthesis of multi-substituted thiphene compounds, see: El-Sharkawy et al. (2012 ▶); Huang et al. (2011 ▶). For the crystal structure of a related compound, see: Mabkhot et al. (2013 ▶).

Experimental

Crystal data

C14H13N3O2S M = 287.34 Monoclinic, a = 8.6121 (15) Å b = 10.6579 (15) Å c = 14.328 (3) Å β = 92.580 (3)° V = 1313.8 (4) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 100 K 0.55 × 0.04 × 0.03 mm

Data collection

Rigaku AFC12 (Right, Saturn724+) diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▶) T min = 0.887, T max = 1.000 8995 measured reflections 2996 independent reflections 2728 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.088 S = 1.07 2996 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2012 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813018734/pv2639sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018734/pv2639Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018734/pv2639Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13N3O2SF(000) = 600
Mr = 287.34Dx = 1.453 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ybcCell parameters from 4552 reflections
a = 8.6121 (15) Åθ = 2.4–30.2°
b = 10.6579 (15) ŵ = 0.25 mm1
c = 14.328 (3) ÅT = 100 K
β = 92.580 (3)°Rod, light brown
V = 1313.8 (4) Å30.55 × 0.04 × 0.03 mm
Z = 4
Rigaku AFC12 (Right, Saturn724+) diffractometer2996 independent reflections
Radiation source: Rotating Anode2728 reflections with I > 2σ(I)
Detector resolution: 28.5714 pixels mm-1Rint = 0.025
profile data from ω–scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012)h = −7→11
Tmin = 0.887, Tmax = 1.000k = −10→13
8995 measured reflectionsl = −18→17
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088 W = 1/[Σ2(FO2) + (0.036P)2 + 0.9009P] WHERE P = (FO2 + 2FC2)/3
S = 1.07(Δ/σ)max = 0.001
2996 reflectionsΔρmax = 0.32 e Å3
194 parametersΔρmin = −0.26 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.24094 (5)0.56107 (3)0.02889 (3)0.0127 (1)
O10.25546 (13)0.32279 (10)−0.06700 (7)0.0146 (3)
O20.09078 (14)0.36573 (10)−0.19090 (7)0.0165 (3)
N10.19895 (16)0.80331 (12)0.08703 (9)0.0139 (4)
N2−0.03010 (18)0.94889 (13)−0.10133 (9)0.0198 (4)
N3−0.01723 (17)0.62007 (13)−0.20023 (9)0.0147 (4)
C10.16973 (18)0.71241 (14)0.02243 (10)0.0122 (4)
C20.08009 (18)0.73139 (14)−0.05985 (10)0.0128 (4)
C30.06672 (18)0.62244 (14)−0.11815 (10)0.0126 (4)
C40.14784 (19)0.52211 (14)−0.07826 (10)0.0130 (4)
C50.01734 (19)0.85067 (15)−0.08401 (10)0.0143 (4)
C60.15918 (18)0.39930 (14)−0.11823 (10)0.0129 (4)
C70.2663 (2)0.19549 (14)−0.10206 (11)0.0168 (4)
C80.3668 (2)0.12347 (15)−0.03187 (11)0.0199 (5)
C90.28921 (18)0.79947 (14)0.17173 (10)0.0130 (4)
C100.3166 (2)0.69024 (14)0.22309 (11)0.0162 (4)
C110.4088 (2)0.69608 (15)0.30549 (11)0.0191 (5)
C120.4702 (2)0.80873 (15)0.33839 (11)0.0176 (5)
C130.43678 (19)0.91814 (15)0.28866 (11)0.0164 (4)
C140.34788 (19)0.91355 (15)0.20580 (11)0.0153 (4)
H3NA−0.004 (2)0.554 (2)−0.2350 (14)0.024 (5)*
H1N0.158 (2)0.8734 (18)0.0753 (12)0.012 (4)*
H3NB−0.039 (2)0.6900 (19)−0.2278 (13)0.018 (5)*
H7A0.313600.19520−0.163800.0200*
H7B0.161800.15710−0.108900.0200*
H8A0.471900.15900−0.028900.0300*
H8B0.371400.03520−0.050800.0300*
H8C0.322400.129400.029800.0300*
H100.273000.612700.202300.0190*
H110.430100.621300.339800.0230*
H120.534300.811100.394100.0210*
H130.475100.996400.311600.0200*
H140.326600.988600.171800.0180*
U11U22U33U12U13U23
S10.0162 (2)0.0097 (2)0.0119 (2)0.0022 (1)−0.0026 (1)−0.0003 (1)
O10.0197 (6)0.0098 (5)0.0139 (5)0.0033 (4)−0.0035 (4)−0.0016 (4)
O20.0231 (6)0.0123 (5)0.0138 (5)0.0014 (4)−0.0039 (4)−0.0009 (4)
N10.0181 (7)0.0095 (6)0.0136 (6)0.0043 (5)−0.0033 (5)−0.0007 (5)
N20.0284 (8)0.0151 (7)0.0153 (7)0.0043 (6)−0.0062 (6)−0.0022 (5)
N30.0196 (8)0.0114 (7)0.0128 (6)0.0016 (5)−0.0035 (5)0.0004 (5)
C10.0126 (8)0.0106 (7)0.0136 (7)0.0009 (6)0.0017 (6)0.0006 (5)
C20.0140 (8)0.0116 (7)0.0127 (7)0.0011 (6)−0.0001 (6)0.0011 (5)
C30.0134 (8)0.0110 (7)0.0134 (7)−0.0005 (6)0.0019 (6)0.0006 (6)
C40.0151 (8)0.0128 (7)0.0108 (7)−0.0008 (6)−0.0017 (6)−0.0002 (5)
C50.0162 (8)0.0157 (8)0.0108 (7)0.0011 (6)−0.0015 (6)−0.0026 (6)
C60.0138 (8)0.0129 (7)0.0121 (7)0.0004 (6)0.0010 (6)0.0021 (5)
C70.0235 (9)0.0106 (7)0.0161 (7)0.0037 (6)−0.0022 (6)−0.0026 (6)
C80.0262 (9)0.0149 (8)0.0184 (8)0.0057 (7)−0.0025 (7)−0.0012 (6)
C90.0144 (8)0.0142 (7)0.0105 (7)0.0016 (6)0.0007 (6)−0.0011 (6)
C100.0217 (9)0.0121 (7)0.0147 (7)0.0010 (6)−0.0001 (6)−0.0013 (6)
C110.0264 (9)0.0161 (8)0.0148 (7)0.0048 (7)−0.0002 (7)0.0021 (6)
C120.0193 (9)0.0209 (8)0.0123 (7)0.0028 (6)−0.0017 (6)−0.0006 (6)
C130.0169 (8)0.0158 (8)0.0164 (7)−0.0016 (6)−0.0003 (6)−0.0014 (6)
C140.0183 (8)0.0128 (7)0.0147 (7)0.0004 (6)0.0003 (6)0.0019 (6)
S1—C11.7266 (16)C7—C81.507 (2)
S1—C41.7497 (16)C9—C141.396 (2)
O1—C61.3552 (19)C9—C101.392 (2)
O1—C71.4512 (19)C10—C111.394 (2)
O2—C61.2264 (18)C11—C121.386 (2)
N1—C11.356 (2)C12—C131.390 (2)
N1—C91.412 (2)C13—C141.384 (2)
N2—C51.147 (2)C7—H7A0.9900
N3—C31.353 (2)C7—H7B0.9900
N1—H1N0.84 (2)C8—H8A0.9800
N3—H3NB0.86 (2)C8—H8B0.9800
N3—H3NA0.87 (2)C8—H8C0.9800
C1—C21.395 (2)C10—H100.9500
C2—C31.432 (2)C11—H110.9500
C2—C51.418 (2)C12—H120.9500
C3—C41.386 (2)C13—H130.9500
C4—C61.434 (2)C14—H140.9500
C1—S1—C491.55 (7)N1—C9—C14116.86 (13)
C6—O1—C7114.99 (11)C9—C10—C11119.14 (14)
C1—N1—C9130.11 (13)C10—C11—C12121.38 (15)
C1—N1—H1N115.8 (12)C11—C12—C13119.04 (15)
C9—N1—H1N114.1 (12)C12—C13—C14120.25 (15)
C3—N3—H3NA115.7 (13)C9—C14—C13120.54 (14)
H3NA—N3—H3NB117.9 (19)O1—C7—H7A110.00
C3—N3—H3NB118.7 (13)O1—C7—H7B110.00
S1—C1—C2111.26 (11)C8—C7—H7A110.00
N1—C1—C2123.52 (14)C8—C7—H7B110.00
S1—C1—N1125.20 (11)H7A—C7—H7B109.00
C1—C2—C5121.79 (14)C7—C8—H8A109.00
C3—C2—C5124.39 (13)C7—C8—H8B109.00
C1—C2—C3113.73 (13)C7—C8—H8C109.00
C2—C3—C4111.05 (13)H8A—C8—H8B110.00
N3—C3—C2123.23 (14)H8A—C8—H8C109.00
N3—C3—C4125.71 (14)H8B—C8—H8C109.00
S1—C4—C3112.41 (11)C9—C10—H10120.00
S1—C4—C6122.03 (11)C11—C10—H10120.00
C3—C4—C6125.56 (14)C10—C11—H11119.00
N2—C5—C2177.72 (16)C12—C11—H11119.00
O2—C6—C4124.52 (14)C11—C12—H12120.00
O1—C6—C4112.58 (12)C13—C12—H12120.00
O1—C6—O2122.90 (13)C12—C13—H13120.00
O1—C7—C8106.81 (12)C14—C13—H13120.00
N1—C9—C10123.53 (14)C9—C14—H14120.00
C10—C9—C14119.57 (14)C13—C14—H14120.00
C4—S1—C1—N1−179.31 (14)C1—C2—C3—C4−0.1 (2)
C4—S1—C1—C2−0.86 (12)N3—C3—C4—C61.4 (3)
C1—S1—C4—C6−179.95 (13)N3—C3—C4—S1−179.43 (13)
C1—S1—C4—C30.82 (13)C2—C3—C4—S1−0.55 (17)
C7—O1—C6—O2−2.8 (2)C2—C3—C4—C6−179.75 (15)
C7—O1—C6—C4177.50 (13)C3—C4—C6—O1175.42 (14)
C6—O1—C7—C8−175.31 (13)C3—C4—C6—O2−4.3 (3)
C9—N1—C1—C2−178.43 (15)S1—C4—C6—O1−3.71 (19)
C9—N1—C1—S1−0.2 (2)S1—C4—C6—O2176.63 (13)
C1—N1—C9—C14155.95 (16)N1—C9—C10—C11179.34 (15)
C1—N1—C9—C10−26.5 (3)C14—C9—C10—C11−3.1 (2)
N1—C1—C2—C3179.20 (14)N1—C9—C14—C13179.64 (14)
S1—C1—C2—C5−175.79 (12)C10—C9—C14—C132.0 (2)
N1—C1—C2—C52.7 (2)C9—C10—C11—C121.7 (3)
S1—C1—C2—C30.72 (17)C10—C11—C12—C131.0 (3)
C5—C2—C3—C4176.30 (15)C11—C12—C13—C14−2.2 (2)
C1—C2—C3—N3178.81 (14)C12—C13—C14—C90.8 (2)
C5—C2—C3—N3−4.8 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3NA···O20.87 (2)2.25 (2)2.8671 (19)128.0 (17)
N1—H1N···N2i0.84 (2)2.23 (2)3.026 (2)158.1 (16)
N3—H3NB···O2ii0.86 (2)2.24 (2)3.0985 (18)175.9 (17)
C10—H10···S10.952.553.1463 (17)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3NA⋯O20.87 (2)2.25 (2)2.8671 (19)128.0 (17)
N1—H1N⋯N2i 0.84 (2)2.23 (2)3.026 (2)158.1 (16)
N3—H3NB⋯O2ii 0.86 (2)2.24 (2)3.0985 (18)175.9 (17)
C10—H10⋯S10.952.553.1463 (17)121

Symmetry codes: (i) ; (ii) .

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