| Literature DB >> 24109334 |
Ahmed M M El-Saghier1, Mehmet Akkurt, Shaaban K Mohamed, Peter N Horton, Mustafa R Albayati.
Abstract
In the title compound, C14H13N3O2S, the dihedral angle between the thio-phene and phenyl rings is 24.95 (8)°. The mol-ecular structure is consolidated by intra-molecular N-H⋯O and C-H⋯S inter-actions. The crystal structure features N-H⋯N and N-H⋯O hydrogen bonds forming centrosymmetric R 2 (2)(12) dimers, which are linked into a two-dimensional network parallel to (011) with an S(6)R 2 (2) S(6) motif. In addition, π-π stacking inter-actions [centroid-centroid distance = 3.7013 (12) Å] occur between the thio-phene and phenyl rings of adjacent mol-ecules.Entities:
Year: 2013 PMID: 24109334 PMCID: PMC3793747 DOI: 10.1107/S1600536813018734
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H13N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4552 reflections |
| θ = 2.4–30.2° | |
| µ = 0.25 mm−1 | |
| β = 92.580 (3)° | Rod, light brown |
| 0.55 × 0.04 × 0.03 mm | |
| Rigaku AFC12 (Right, Saturn724+) diffractometer | 2996 independent reflections |
| Radiation source: Rotating Anode | 2728 reflections with |
| Detector resolution: 28.5714 pixels mm-1 | |
| profile data from ω–scans | θmax = 27.5°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 8995 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| W = 1/[Σ2( | |
| (Δ/σ)max = 0.001 | |
| 2996 reflections | Δρmax = 0.32 e Å−3 |
| 194 parameters | Δρmin = −0.26 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement on |
| S1 | 0.24094 (5) | 0.56107 (3) | 0.02889 (3) | 0.0127 (1) | |
| O1 | 0.25546 (13) | 0.32279 (10) | −0.06700 (7) | 0.0146 (3) | |
| O2 | 0.09078 (14) | 0.36573 (10) | −0.19090 (7) | 0.0165 (3) | |
| N1 | 0.19895 (16) | 0.80331 (12) | 0.08703 (9) | 0.0139 (4) | |
| N2 | −0.03010 (18) | 0.94889 (13) | −0.10133 (9) | 0.0198 (4) | |
| N3 | −0.01723 (17) | 0.62007 (13) | −0.20023 (9) | 0.0147 (4) | |
| C1 | 0.16973 (18) | 0.71241 (14) | 0.02243 (10) | 0.0122 (4) | |
| C2 | 0.08009 (18) | 0.73139 (14) | −0.05985 (10) | 0.0128 (4) | |
| C3 | 0.06672 (18) | 0.62244 (14) | −0.11815 (10) | 0.0126 (4) | |
| C4 | 0.14784 (19) | 0.52211 (14) | −0.07826 (10) | 0.0130 (4) | |
| C5 | 0.01734 (19) | 0.85067 (15) | −0.08401 (10) | 0.0143 (4) | |
| C6 | 0.15918 (18) | 0.39930 (14) | −0.11823 (10) | 0.0129 (4) | |
| C7 | 0.2663 (2) | 0.19549 (14) | −0.10206 (11) | 0.0168 (4) | |
| C8 | 0.3668 (2) | 0.12347 (15) | −0.03187 (11) | 0.0199 (5) | |
| C9 | 0.28921 (18) | 0.79947 (14) | 0.17173 (10) | 0.0130 (4) | |
| C10 | 0.3166 (2) | 0.69024 (14) | 0.22309 (11) | 0.0162 (4) | |
| C11 | 0.4088 (2) | 0.69608 (15) | 0.30549 (11) | 0.0191 (5) | |
| C12 | 0.4702 (2) | 0.80873 (15) | 0.33839 (11) | 0.0176 (5) | |
| C13 | 0.43678 (19) | 0.91814 (15) | 0.28866 (11) | 0.0164 (4) | |
| C14 | 0.34788 (19) | 0.91355 (15) | 0.20580 (11) | 0.0153 (4) | |
| H3NA | −0.004 (2) | 0.554 (2) | −0.2350 (14) | 0.024 (5)* | |
| H1N | 0.158 (2) | 0.8734 (18) | 0.0753 (12) | 0.012 (4)* | |
| H3NB | −0.039 (2) | 0.6900 (19) | −0.2278 (13) | 0.018 (5)* | |
| H7A | 0.31360 | 0.19520 | −0.16380 | 0.0200* | |
| H7B | 0.16180 | 0.15710 | −0.10890 | 0.0200* | |
| H8A | 0.47190 | 0.15900 | −0.02890 | 0.0300* | |
| H8B | 0.37140 | 0.03520 | −0.05080 | 0.0300* | |
| H8C | 0.32240 | 0.12940 | 0.02980 | 0.0300* | |
| H10 | 0.27300 | 0.61270 | 0.20230 | 0.0190* | |
| H11 | 0.43010 | 0.62130 | 0.33980 | 0.0230* | |
| H12 | 0.53430 | 0.81110 | 0.39410 | 0.0210* | |
| H13 | 0.47510 | 0.99640 | 0.31160 | 0.0200* | |
| H14 | 0.32660 | 0.98860 | 0.17180 | 0.0180* |
| S1 | 0.0162 (2) | 0.0097 (2) | 0.0119 (2) | 0.0022 (1) | −0.0026 (1) | −0.0003 (1) |
| O1 | 0.0197 (6) | 0.0098 (5) | 0.0139 (5) | 0.0033 (4) | −0.0035 (4) | −0.0016 (4) |
| O2 | 0.0231 (6) | 0.0123 (5) | 0.0138 (5) | 0.0014 (4) | −0.0039 (4) | −0.0009 (4) |
| N1 | 0.0181 (7) | 0.0095 (6) | 0.0136 (6) | 0.0043 (5) | −0.0033 (5) | −0.0007 (5) |
| N2 | 0.0284 (8) | 0.0151 (7) | 0.0153 (7) | 0.0043 (6) | −0.0062 (6) | −0.0022 (5) |
| N3 | 0.0196 (8) | 0.0114 (7) | 0.0128 (6) | 0.0016 (5) | −0.0035 (5) | 0.0004 (5) |
| C1 | 0.0126 (8) | 0.0106 (7) | 0.0136 (7) | 0.0009 (6) | 0.0017 (6) | 0.0006 (5) |
| C2 | 0.0140 (8) | 0.0116 (7) | 0.0127 (7) | 0.0011 (6) | −0.0001 (6) | 0.0011 (5) |
| C3 | 0.0134 (8) | 0.0110 (7) | 0.0134 (7) | −0.0005 (6) | 0.0019 (6) | 0.0006 (6) |
| C4 | 0.0151 (8) | 0.0128 (7) | 0.0108 (7) | −0.0008 (6) | −0.0017 (6) | −0.0002 (5) |
| C5 | 0.0162 (8) | 0.0157 (8) | 0.0108 (7) | 0.0011 (6) | −0.0015 (6) | −0.0026 (6) |
| C6 | 0.0138 (8) | 0.0129 (7) | 0.0121 (7) | 0.0004 (6) | 0.0010 (6) | 0.0021 (5) |
| C7 | 0.0235 (9) | 0.0106 (7) | 0.0161 (7) | 0.0037 (6) | −0.0022 (6) | −0.0026 (6) |
| C8 | 0.0262 (9) | 0.0149 (8) | 0.0184 (8) | 0.0057 (7) | −0.0025 (7) | −0.0012 (6) |
| C9 | 0.0144 (8) | 0.0142 (7) | 0.0105 (7) | 0.0016 (6) | 0.0007 (6) | −0.0011 (6) |
| C10 | 0.0217 (9) | 0.0121 (7) | 0.0147 (7) | 0.0010 (6) | −0.0001 (6) | −0.0013 (6) |
| C11 | 0.0264 (9) | 0.0161 (8) | 0.0148 (7) | 0.0048 (7) | −0.0002 (7) | 0.0021 (6) |
| C12 | 0.0193 (9) | 0.0209 (8) | 0.0123 (7) | 0.0028 (6) | −0.0017 (6) | −0.0006 (6) |
| C13 | 0.0169 (8) | 0.0158 (8) | 0.0164 (7) | −0.0016 (6) | −0.0003 (6) | −0.0014 (6) |
| C14 | 0.0183 (8) | 0.0128 (7) | 0.0147 (7) | 0.0004 (6) | 0.0003 (6) | 0.0019 (6) |
| S1—C1 | 1.7266 (16) | C7—C8 | 1.507 (2) |
| S1—C4 | 1.7497 (16) | C9—C14 | 1.396 (2) |
| O1—C6 | 1.3552 (19) | C9—C10 | 1.392 (2) |
| O1—C7 | 1.4512 (19) | C10—C11 | 1.394 (2) |
| O2—C6 | 1.2264 (18) | C11—C12 | 1.386 (2) |
| N1—C1 | 1.356 (2) | C12—C13 | 1.390 (2) |
| N1—C9 | 1.412 (2) | C13—C14 | 1.384 (2) |
| N2—C5 | 1.147 (2) | C7—H7A | 0.9900 |
| N3—C3 | 1.353 (2) | C7—H7B | 0.9900 |
| N1—H1N | 0.84 (2) | C8—H8A | 0.9800 |
| N3—H3NB | 0.86 (2) | C8—H8B | 0.9800 |
| N3—H3NA | 0.87 (2) | C8—H8C | 0.9800 |
| C1—C2 | 1.395 (2) | C10—H10 | 0.9500 |
| C2—C3 | 1.432 (2) | C11—H11 | 0.9500 |
| C2—C5 | 1.418 (2) | C12—H12 | 0.9500 |
| C3—C4 | 1.386 (2) | C13—H13 | 0.9500 |
| C4—C6 | 1.434 (2) | C14—H14 | 0.9500 |
| C1—S1—C4 | 91.55 (7) | N1—C9—C14 | 116.86 (13) |
| C6—O1—C7 | 114.99 (11) | C9—C10—C11 | 119.14 (14) |
| C1—N1—C9 | 130.11 (13) | C10—C11—C12 | 121.38 (15) |
| C1—N1—H1N | 115.8 (12) | C11—C12—C13 | 119.04 (15) |
| C9—N1—H1N | 114.1 (12) | C12—C13—C14 | 120.25 (15) |
| C3—N3—H3NA | 115.7 (13) | C9—C14—C13 | 120.54 (14) |
| H3NA—N3—H3NB | 117.9 (19) | O1—C7—H7A | 110.00 |
| C3—N3—H3NB | 118.7 (13) | O1—C7—H7B | 110.00 |
| S1—C1—C2 | 111.26 (11) | C8—C7—H7A | 110.00 |
| N1—C1—C2 | 123.52 (14) | C8—C7—H7B | 110.00 |
| S1—C1—N1 | 125.20 (11) | H7A—C7—H7B | 109.00 |
| C1—C2—C5 | 121.79 (14) | C7—C8—H8A | 109.00 |
| C3—C2—C5 | 124.39 (13) | C7—C8—H8B | 109.00 |
| C1—C2—C3 | 113.73 (13) | C7—C8—H8C | 109.00 |
| C2—C3—C4 | 111.05 (13) | H8A—C8—H8B | 110.00 |
| N3—C3—C2 | 123.23 (14) | H8A—C8—H8C | 109.00 |
| N3—C3—C4 | 125.71 (14) | H8B—C8—H8C | 109.00 |
| S1—C4—C3 | 112.41 (11) | C9—C10—H10 | 120.00 |
| S1—C4—C6 | 122.03 (11) | C11—C10—H10 | 120.00 |
| C3—C4—C6 | 125.56 (14) | C10—C11—H11 | 119.00 |
| N2—C5—C2 | 177.72 (16) | C12—C11—H11 | 119.00 |
| O2—C6—C4 | 124.52 (14) | C11—C12—H12 | 120.00 |
| O1—C6—C4 | 112.58 (12) | C13—C12—H12 | 120.00 |
| O1—C6—O2 | 122.90 (13) | C12—C13—H13 | 120.00 |
| O1—C7—C8 | 106.81 (12) | C14—C13—H13 | 120.00 |
| N1—C9—C10 | 123.53 (14) | C9—C14—H14 | 120.00 |
| C10—C9—C14 | 119.57 (14) | C13—C14—H14 | 120.00 |
| C4—S1—C1—N1 | −179.31 (14) | C1—C2—C3—C4 | −0.1 (2) |
| C4—S1—C1—C2 | −0.86 (12) | N3—C3—C4—C6 | 1.4 (3) |
| C1—S1—C4—C6 | −179.95 (13) | N3—C3—C4—S1 | −179.43 (13) |
| C1—S1—C4—C3 | 0.82 (13) | C2—C3—C4—S1 | −0.55 (17) |
| C7—O1—C6—O2 | −2.8 (2) | C2—C3—C4—C6 | −179.75 (15) |
| C7—O1—C6—C4 | 177.50 (13) | C3—C4—C6—O1 | 175.42 (14) |
| C6—O1—C7—C8 | −175.31 (13) | C3—C4—C6—O2 | −4.3 (3) |
| C9—N1—C1—C2 | −178.43 (15) | S1—C4—C6—O1 | −3.71 (19) |
| C9—N1—C1—S1 | −0.2 (2) | S1—C4—C6—O2 | 176.63 (13) |
| C1—N1—C9—C14 | 155.95 (16) | N1—C9—C10—C11 | 179.34 (15) |
| C1—N1—C9—C10 | −26.5 (3) | C14—C9—C10—C11 | −3.1 (2) |
| N1—C1—C2—C3 | 179.20 (14) | N1—C9—C14—C13 | 179.64 (14) |
| S1—C1—C2—C5 | −175.79 (12) | C10—C9—C14—C13 | 2.0 (2) |
| N1—C1—C2—C5 | 2.7 (2) | C9—C10—C11—C12 | 1.7 (3) |
| S1—C1—C2—C3 | 0.72 (17) | C10—C11—C12—C13 | 1.0 (3) |
| C5—C2—C3—C4 | 176.30 (15) | C11—C12—C13—C14 | −2.2 (2) |
| C1—C2—C3—N3 | 178.81 (14) | C12—C13—C14—C9 | 0.8 (2) |
| C5—C2—C3—N3 | −4.8 (2) |
| H··· | ||||
| N3—H3 | 0.87 (2) | 2.25 (2) | 2.8671 (19) | 128.0 (17) |
| N1—H1 | 0.84 (2) | 2.23 (2) | 3.026 (2) | 158.1 (16) |
| N3—H3 | 0.86 (2) | 2.24 (2) | 3.0985 (18) | 175.9 (17) |
| C10—H10···S1 | 0.95 | 2.55 | 3.1463 (17) | 121 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.87 (2) | 2.25 (2) | 2.8671 (19) | 128.0 (17) |
| N1—H1 | 0.84 (2) | 2.23 (2) | 3.026 (2) | 158.1 (16) |
| N3—H3 | 0.86 (2) | 2.24 (2) | 3.0985 (18) | 175.9 (17) |
| C10—H10⋯S1 | 0.95 | 2.55 | 3.1463 (17) | 121 |
Symmetry codes: (i) ; (ii) .