Literature DB >> 24046601

N,N,N-Trimethyl-N-(methyl 5-de-oxy-2,3-O-iso-propyl-idene-β-d-ribo-furan-osid-5-yl)ammonium 4-methyl-benzene-sulfonate sesquihydrate.

Barbara Dmochowska1, Karol Sikora, Jaroslaw Chojnacki, Wieslaw Wojnowski, Andrzej Wiśniewski.   

Abstract

The structure of the title compound, [C12H24NO4][C7H7O3S]·1.5H2O, contains alternating layers parallel to (001) of hydro-phobic and polar character, stabilized by C-H⋯O hydrogen bonding. The furan ring adopts an envelope conformation with the C(OMe) atom as the flap, and the dioxolane ring is twisted about one of the O-C(methine) bonds. A comparison to related compounds is presented. The tosyl-ate-O atoms were disordered over two positions with the major component having a site occupancy factor = 0.566 (12). The structure was refined as a rotary twin with regard to rotation about the c axis with the contribution of the second component being 0.0048 (6). Solvate water mol-ecules are highly disordered and were removed using the SQUEEZE procedure; the unit cell characteristics take into account the presence of the disordered solvent. High-resolution (1)H and (13)C NMR spectroscopic data are also presented.

Entities:  

Year:  2013        PMID: 24046601      PMCID: PMC3772458          DOI: 10.1107/S1600536813014797

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to quaternary ammonium compounds, see: Jones (1984 ▶); Śliwa (1996 ▶); Sajomsang et al. (2009 ▶); Obłąk & Gamian (2010 ▶); Binks et al. (2011 ▶); Singh et al. (2009 ▶); Cruz-Guzman et al. (2005 ▶); Rabea et al. (2003 ▶); Belalia et al., 2008 ▶; McDonnell & Russell (1999 ▶); Boethling (1984 ▶); Levinson (1999 ▶); Cross & Singer (1994 ▶). For QAC sugar derivatives, see: Abel et al. (2002 ▶); Blizzard et al. (2002 ▶); Honda et al. (1988 ▶); Thomas et al. (2009 ▶); Maslov et al. (2010 ▶); Dmochowska et al. (2006 ▶, 2009 ▶, 2011 ▶); Pellowska-Januszek et al. (2004 ▶); Skorupa et al. (2004 ▶). For related synthetic methods, see: Gosh & Liu (1996 ▶); Sairam et al. 2003 ▶; Sarabia-Garcia & Lopez-Herrera (1996 ▶); Dibrov et al. (2010 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C12H24NO4 +·C7H7O3S−·1.5H2O M = 444.53 Monoclinic, a = 11.4896 (15) Å b = 7.9311 (11) Å c = 13.4853 (17) Å β = 111.619 (12)° V = 1142.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 200 K 0.37 × 0.2 × 0.17 mm

Data collection

Kuma KM4CCD (Sapphire2 detector) diffractometer 26053 measured reflections 4481 independent reflections 4325 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.139 S = 1.07 4481 reflections 283 parameters 40 restraints H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.31 e Å−3 Absolute structure: Flack & Bernardinelli (1999 ▶) Flack parameter: 0.08 (12) Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and WinGX (Farrugia, 2012 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813014797/tk5228sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813014797/tk5228Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H24NO4+·C7H7O3S·1.5H2OF(000) = 478
Mr = 444.53Dx = 1.292 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3067 reflections
a = 11.4896 (15) Åθ = 2–30°
b = 7.9311 (11) ŵ = 0.19 mm1
c = 13.4853 (17) ÅT = 200 K
β = 111.619 (12)°Block, colourless
V = 1142.4 (3) Å30.37 × 0.2 × 0.17 mm
Z = 2
Kuma KM4CCD (Sapphire2 detector) diffractometerRint = 0.038
Graphite monochromatorθmax = 26°, θmin = 2.9°
ω scans, 1 deg framesh = −14→14
26053 measured reflectionsk = −9→9
4481 independent reflectionsl = −16→16
4325 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.139w = 1/[σ2(Fo2) + (0.0737P)2 + 0.6709P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.007
4481 reflectionsΔρmax = 0.40 e Å3
283 parametersΔρmin = −0.31 e Å3
40 restraintsAbsolute structure: Flack & Bernardinelli (1999)
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.08 (12)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.4006 (3)0.9674 (4)0.8428 (2)0.0299 (6)
H10.45171.01470.91440.036*
C20.4217 (3)0.7801 (4)0.8398 (2)0.0294 (6)
H20.36760.71230.86830.035*
C30.3957 (3)0.7445 (4)0.7215 (2)0.0284 (6)
H30.30890.7010.68360.034*
C40.4153 (3)0.9195 (3)0.6776 (2)0.0261 (6)
H40.49130.91440.65840.031*
O50.43649 (19)1.0397 (3)0.76273 (15)0.0295 (5)
O60.5509 (2)0.7393 (3)0.88856 (15)0.0322 (5)
C70.5743 (3)0.6006 (4)0.8296 (2)0.0314 (6)
O80.4872 (2)0.6252 (3)0.72143 (15)0.0392 (5)
C90.5476 (4)0.4340 (4)0.8700 (3)0.0447 (8)
H9A0.56430.34250.82810.067*
H9B0.45970.430.86280.067*
H9C0.60150.42070.94520.067*
C100.7061 (3)0.6147 (5)0.8315 (3)0.0457 (8)
H10A0.72290.52060.79160.069*
H10B0.76560.61140.90540.069*
H10C0.71540.72150.79850.069*
C110.3025 (3)0.9654 (4)0.5787 (2)0.0282 (6)
H11A0.28150.86710.530.034*
H11B0.23040.98570.60050.034*
N120.3178 (2)1.1180 (3)0.51680 (16)0.0272 (5)
C130.4218 (3)1.0949 (4)0.4768 (2)0.0378 (7)
H13A0.40810.99090.43470.057*
H13B0.50161.08750.53740.057*
H13C0.42391.19110.43190.057*
C140.1974 (3)1.1358 (5)0.4218 (2)0.0424 (7)
H14A0.12771.15110.44630.064*
H14B0.18331.0340.37770.064*
H14C0.20281.23390.37960.064*
C150.3408 (4)1.2769 (4)0.5807 (3)0.0407 (8)
H15A0.27321.29390.60760.061*
H15B0.34341.37250.53540.061*
H15C0.42091.26860.64090.061*
O160.2726 (2)0.9863 (3)0.8220 (2)0.0411 (6)
C170.2344 (4)1.1544 (6)0.8338 (3)0.0527 (9)
H17A0.1441.15640.81760.079*
H17B0.25451.22960.78470.079*
H17C0.27871.19240.90730.079*
C180.8291 (3)0.1549 (4)0.8487 (2)0.0322 (6)
C190.9296 (3)0.2527 (5)0.9119 (4)0.0503 (9)
H190.97730.31540.88020.06*
C200.9596 (3)0.2581 (5)1.0210 (4)0.0550 (10)
H201.0280.32571.06380.066*
C210.8916 (3)0.1665 (5)1.0694 (3)0.0497 (10)
C220.7906 (3)0.0723 (4)1.0053 (3)0.0391 (7)
H220.74240.01011.03680.047*
C230.7587 (3)0.0678 (4)0.8952 (2)0.0313 (6)
H230.68810.00440.85190.038*
C240.9289 (5)0.1691 (8)1.1889 (3)0.086 (2)
H24A1.01390.1241.22270.13*
H24B0.87050.09951.20890.13*
H24C0.92650.28521.21290.13*
S250.78821 (10)0.14712 (13)0.70869 (7)0.0533 (3)
O260.6888 (12)0.2652 (11)0.6587 (9)0.063 (4)0.434 (12)
O270.7138 (7)−0.0238 (7)0.6715 (4)0.039 (2)0.434 (12)
O280.8913 (7)0.138 (2)0.6800 (6)0.093 (6)0.434 (12)
O26A0.8903 (7)0.2787 (11)0.7015 (6)0.074 (2)0.566 (12)
O27A0.8177 (15)−0.0076 (8)0.6870 (7)0.115 (6)0.566 (12)
O28A0.6753 (10)0.235 (2)0.6701 (10)0.109 (6)0.566 (12)
U11U22U33U12U13U23
C10.0336 (15)0.0316 (15)0.0258 (13)0.0032 (12)0.0123 (11)0.0008 (11)
C20.0327 (15)0.0305 (15)0.0276 (13)−0.0006 (12)0.0142 (11)0.0016 (11)
C30.0305 (15)0.0277 (14)0.0249 (13)−0.0006 (12)0.0077 (11)0.0011 (11)
C40.0288 (14)0.0267 (14)0.0220 (12)−0.0006 (11)0.0085 (10)−0.0003 (10)
O50.0378 (11)0.0260 (10)0.0245 (9)−0.0026 (8)0.0112 (8)−0.0017 (8)
O60.0363 (11)0.0317 (11)0.0238 (9)0.0047 (9)0.0053 (8)−0.0036 (8)
C70.0411 (16)0.0258 (15)0.0239 (13)0.0045 (12)0.0080 (11)−0.0005 (11)
O80.0576 (14)0.0338 (12)0.0235 (9)0.0153 (11)0.0117 (9)0.0003 (9)
C90.071 (2)0.0285 (17)0.0331 (16)0.0007 (16)0.0170 (16)0.0024 (13)
C100.0428 (18)0.042 (2)0.0556 (19)0.0086 (16)0.0216 (15)−0.0026 (16)
C110.0317 (15)0.0285 (15)0.0232 (12)−0.0037 (12)0.0089 (11)0.0035 (11)
N120.0320 (12)0.0271 (12)0.0213 (10)−0.0037 (10)0.0083 (9)−0.0014 (9)
C130.0438 (17)0.0425 (19)0.0320 (14)−0.0032 (15)0.0199 (13)0.0026 (13)
C140.0395 (17)0.0455 (19)0.0325 (14)0.0001 (15)0.0019 (12)0.0118 (15)
C150.064 (2)0.0266 (16)0.0340 (16)−0.0035 (15)0.0214 (15)−0.0020 (13)
O160.0346 (12)0.0409 (13)0.0544 (13)0.0037 (10)0.0242 (10)−0.0032 (11)
C170.055 (2)0.051 (2)0.058 (2)0.0229 (19)0.0277 (18)0.0015 (19)
C180.0295 (14)0.0293 (15)0.0397 (15)0.0087 (13)0.0150 (12)0.0041 (13)
C190.0292 (17)0.0359 (18)0.085 (3)−0.0051 (14)0.0198 (17)0.0035 (18)
C200.0311 (18)0.047 (2)0.071 (3)−0.0012 (16)0.0001 (17)−0.020 (2)
C210.0426 (19)0.052 (2)0.0374 (17)0.0237 (17)−0.0054 (14)−0.0122 (16)
C220.0429 (18)0.0407 (18)0.0365 (16)0.0116 (14)0.0178 (14)0.0057 (13)
C230.0291 (14)0.0267 (14)0.0343 (15)−0.0008 (11)0.0073 (12)−0.0011 (11)
C240.086 (3)0.113 (4)0.037 (2)0.054 (3)−0.005 (2)−0.022 (2)
S250.0711 (7)0.0562 (6)0.0434 (4)0.0187 (5)0.0335 (4)0.0176 (4)
O260.110 (10)0.025 (3)0.026 (4)0.011 (4)−0.006 (4)−0.004 (3)
O270.055 (4)0.034 (3)0.028 (3)−0.011 (3)0.017 (3)−0.012 (2)
O280.060 (5)0.185 (16)0.046 (4)−0.043 (7)0.034 (3)−0.015 (6)
O26A0.087 (5)0.082 (5)0.076 (4)−0.001 (4)0.057 (4)0.013 (4)
O27A0.261 (18)0.043 (3)0.077 (5)0.007 (6)0.105 (8)−0.005 (3)
O28A0.050 (5)0.211 (15)0.057 (5)0.017 (6)0.008 (4)0.027 (6)
C1—O161.400 (4)C14—H14A0.98
C1—O51.411 (3)C14—H14B0.98
C1—C21.508 (4)C14—H14C0.98
C1—H11C15—H15A0.98
C2—O61.421 (4)C15—H15B0.98
C2—C31.537 (4)C15—H15C0.98
C2—H21O16—C171.431 (5)
C3—O81.414 (4)C17—H17A0.98
C3—C41.557 (4)C17—H17B0.98
C3—H31C17—H17C0.98
C4—O51.442 (3)C18—C231.377 (4)
C4—C111.522 (4)C18—C191.391 (5)
C4—H41C18—S251.771 (3)
O6—C71.439 (3)C19—C201.383 (6)
C7—O81.447 (3)C19—H190.95
C7—C91.503 (4)C20—C211.393 (6)
C7—C101.510 (5)C20—H200.95
C9—H9A0.98C21—C221.383 (5)
C9—H9B0.98C21—C241.508 (5)
C9—H9C0.98C22—C231.393 (4)
C10—H10A0.98C22—H220.95
C10—H10B0.98C23—H230.95
C10—H10C0.98C24—H24A0.98
C11—N121.516 (3)C24—H24B0.98
C11—H11A0.99C24—H24C0.98
C11—H11B0.99S25—O27A1.334 (6)
N12—C131.493 (4)S25—O281.377 (7)
N12—C151.494 (4)S25—O28A1.396 (9)
N12—C141.507 (4)S25—O261.438 (9)
C13—H13A0.98S25—O271.582 (6)
C13—H13B0.98S25—O26A1.599 (7)
C13—H13C0.98
O16—C1—O5112.6 (2)N12—C14—H14A109.5
O16—C1—C2105.5 (3)N12—C14—H14B109.5
O5—C1—C2106.5 (2)H14A—C14—H14B109.5
O16—C1—H1110.7N12—C14—H14C109.5
O5—C1—H1110.7H14A—C14—H14C109.5
C2—C1—H1110.7H14B—C14—H14C109.5
O6—C2—C1111.3 (2)N12—C15—H15A109.5
O6—C2—C3102.1 (2)N12—C15—H15B109.5
C1—C2—C3103.7 (2)H15A—C15—H15B109.5
O6—C2—H2113N12—C15—H15C109.5
C1—C2—H2113H15A—C15—H15C109.5
C3—C2—H2113H15B—C15—H15C109.5
O8—C3—C2105.2 (2)C1—O16—C17114.8 (3)
O8—C3—C4112.7 (2)O16—C17—H17A109.5
C2—C3—C4103.3 (2)O16—C17—H17B109.5
O8—C3—H3111.7H17A—C17—H17B109.5
C2—C3—H3111.7O16—C17—H17C109.5
C4—C3—H3111.7H17A—C17—H17C109.5
O5—C4—C11112.3 (2)H17B—C17—H17C109.5
O5—C4—C3107.0 (2)C23—C18—C19119.6 (3)
C11—C4—C3110.6 (2)C23—C18—S25119.9 (2)
O5—C4—H4109C19—C18—S25120.4 (3)
C11—C4—H4109C20—C19—C18119.7 (3)
C3—C4—H4109C20—C19—H19120.2
C1—O5—C4109.2 (2)C18—C19—H19120.2
C2—O6—C7107.1 (2)C19—C20—C21121.2 (3)
O6—C7—O8104.7 (2)C19—C20—H20119.4
O6—C7—C9111.6 (2)C21—C20—H20119.4
O8—C7—C9109.0 (3)C22—C21—C20118.4 (3)
O6—C7—C10109.0 (3)C22—C21—C24121.1 (5)
O8—C7—C10108.9 (3)C20—C21—C24120.4 (4)
C9—C7—C10113.4 (3)C21—C22—C23120.7 (3)
C3—O8—C7109.1 (2)C21—C22—H22119.7
C7—C9—H9A109.5C23—C22—H22119.7
C7—C9—H9B109.5C18—C23—C22120.3 (3)
H9A—C9—H9B109.5C18—C23—H23119.9
C7—C9—H9C109.5C22—C23—H23119.9
H9A—C9—H9C109.5C21—C24—H24A109.5
H9B—C9—H9C109.5C21—C24—H24B109.5
C7—C10—H10A109.5H24A—C24—H24B109.5
C7—C10—H10B109.5C21—C24—H24C109.5
H10A—C10—H10B109.5H24A—C24—H24C109.5
C7—C10—H10C109.5H24B—C24—H24C109.5
H10A—C10—H10C109.5O27A—S25—O2865.0 (8)
H10B—C10—H10C109.5O27A—S25—O28A131.0 (9)
N12—C11—C4116.1 (2)O28—S25—O28A134.3 (8)
N12—C11—H11A108.3O27A—S25—O26135.9 (7)
C4—C11—H11A108.3O28—S25—O26121.2 (8)
N12—C11—H11B108.3O27A—S25—O2745.1 (6)
C4—C11—H11B108.3O28—S25—O27106.7 (7)
H11A—C11—H11B107.4O28A—S25—O2789.6 (7)
C13—N12—C15108.5 (2)O26—S25—O2799.6 (5)
C13—N12—C14108.1 (2)O27A—S25—O26A109.6 (6)
C15—N12—C14108.8 (3)O28A—S25—O26A104.6 (7)
C13—N12—C11111.8 (2)O26—S25—O26A91.2 (7)
C15—N12—C11112.8 (2)O27—S25—O26A149.6 (3)
C14—N12—C11106.7 (2)O27A—S25—C18106.1 (4)
N12—C13—H13A109.5O28—S25—C18112.6 (3)
N12—C13—H13B109.5O28A—S25—C18103.0 (6)
H13A—C13—H13B109.5O26—S25—C18109.3 (5)
N12—C13—H13C109.5O27—S25—C18105.6 (2)
H13A—C13—H13C109.5O26A—S25—C1897.4 (3)
H13B—C13—H13C109.5
O16—C1—C2—O6−163.4 (2)C9—C7—O8—C3105.0 (3)
O5—C1—C2—O676.7 (3)C10—C7—O8—C3−130.9 (3)
O16—C1—C2—C387.6 (3)O5—C4—C11—N1270.6 (3)
O5—C1—C2—C3−32.4 (3)C3—C4—C11—N12−170.0 (2)
O6—C2—C3—O824.8 (3)C4—C11—N12—C1360.4 (3)
C1—C2—C3—O8140.5 (2)C4—C11—N12—C15−62.1 (3)
O6—C2—C3—C4−93.5 (3)C4—C11—N12—C14178.4 (3)
C1—C2—C3—C422.2 (3)O5—C1—O16—C17−71.4 (3)
O8—C3—C4—O5−118.6 (2)C2—C1—O16—C17172.8 (3)
C2—C3—C4—O5−5.5 (3)C23—C18—C19—C201.6 (5)
O8—C3—C4—C11118.8 (3)S25—C18—C19—C20179.5 (3)
C2—C3—C4—C11−128.1 (2)C18—C19—C20—C210.4 (6)
O16—C1—O5—C4−85.3 (3)C19—C20—C21—C22−1.6 (6)
C2—C1—O5—C430.0 (3)C19—C20—C21—C24177.7 (4)
C11—C4—O5—C1106.6 (3)C20—C21—C22—C230.8 (5)
C3—C4—O5—C1−14.9 (3)C24—C21—C22—C23−178.5 (3)
C1—C2—O6—C7−144.6 (2)C19—C18—C23—C22−2.4 (5)
C3—C2—O6—C7−34.5 (3)S25—C18—C23—C22179.6 (2)
C2—O6—C7—O831.5 (3)C21—C22—C23—C181.2 (5)
C2—O6—C7—C9−86.3 (3)C23—C18—S25—O27−24.9 (4)
C2—O6—C7—C10147.8 (3)C19—C18—S25—O27157.2 (4)
C2—C3—O8—C7−6.3 (3)C23—C18—S25—O26A175.2 (4)
C4—C3—O8—C7105.6 (3)C19—C18—S25—O26A−2.7 (4)
O6—C7—O8—C3−14.5 (3)
D—H···AD—HH···AD···AD—H···A
C13—H13A···O28Ai0.982.453.412 (15)167
C13—H13B···O28Aii0.982.443.308 (13)148
C14—H14B···O26Ai0.982.303.251 (9)163
C14—H14C···O27Aiii0.982.223.161 (8)162
C15—H15C···O50.982.412.964 (4)115
C19—H19···O26A0.952.262.712 (9)108
Conformation of the furanoic ringConformation of the dioxolane ringC1 substitutionC2–C3 substitutionC4 substitutionReference
Envelope on the O5 atom (E0)Envelope on C7 (E1)H2,3-O-isopropylideneCH2NMe3(+), OTs(-)Dmochowska et al. (2006); Skorupa et al. (2004)
Twisted about the O5–C1 bond (0T1)Envelope on C7 (E0)H2,3-O-isopropylideneCH2NMe3(+), I(-)Dmochowska et al. (2006)
Envelope on the C1 atom (E1)Twisted about the O6-C2 bond(0T1)OCH32,3-O-isopropylideneCH2NMe3(+), OTs(-)this work
Envelope on the O5 atom (E0)Twisted about the O18-C20 bond (2T3)H2,3-O-isopropylideneCH2OTsDmochowska et al. (2009)
Envelope on the C3 atom (E3)Hcis-2,3-dihydroxyCH2OTsDmochowska et al. (2009)
Envelope on the C1 atom (E2)Htrans-2,3-dihydroxyCH2OTsDibrov et al. (2010)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C13—H13A⋯O28A i 0.982.453.412 (15)167
C13—H13B⋯O28A ii 0.982.443.308 (13)148
C14—H14B⋯O26A i 0.982.303.251 (9)163
C14—H14C⋯O27A iii 0.982.223.161 (8)162
C15—H15C⋯O50.982.412.964 (4)115
C19—H19⋯O26A 0.952.262.712 (9)108

Symmetry codes: (i) ; (ii) ; (iii) .

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