| Literature DB >> 21589395 |
Sergey Dibrov1, Maia Carnevali, Thomas Hermann.
Abstract
The racemic title compound, C(12)H(16)O(6)S, possesses a five-membered ring that adopts an envelope-shaped conformation; the two hy-droxy groups occupy quasi-axial positions. Adjacent mol-ecules are linked by O-H⋯O hydrogen bonds to generate a ribbon that runs along the a axis of the ortho-rhom-bic unit cell. The crystal studied was an inversion twin.Entities:
Year: 2010 PMID: 21589395 PMCID: PMC3011728 DOI: 10.1107/S1600536810044788
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H16O6S | |
| Orthorhombic, | Mo |
| Hall symbol: P2ac2ab | Cell parameters from 3862 reflections |
| θ = 2.6–23.4° | |
| µ = 0.26 mm−1 | |
| Block, colourless | |
| 0.50 × 0.30 × 0.20 mm |
| Bruker APEXII CCD diffractometer | 3154 independent reflections |
| Radiation source: fine-focus sealed tube | 2333 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.5°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 14329 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.003 | |
| Δρmax = 0.26 e Å−3 | |
| 3154 reflections | Δρmin = −0.19 e Å−3 |
| 177 parameters | Extinction correction: |
| 0 restraints | Extinction coefficient: 0.0054 (12) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), with 1174 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.47 (12) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.49846 (15) | 0.83391 (7) | 0.19055 (3) | 0.03938 (19) | |
| O4 | 0.3443 (4) | 0.9149 (2) | 0.14690 (8) | 0.0403 (5) | |
| O3 | −0.1096 (4) | 0.7717 (2) | 0.02146 (9) | 0.0522 (6) | |
| H3 | −0.2351 | 0.7308 | 0.0104 | 0.063* | |
| O5 | 0.6954 (4) | 0.9196 (2) | 0.20441 (10) | 0.0558 (6) | |
| O1 | 0.1981 (4) | 0.9922 (2) | 0.03798 (8) | 0.0452 (5) | |
| O6 | 0.5516 (4) | 0.7081 (2) | 0.16814 (8) | 0.0533 (6) | |
| C3 | −0.1840 (5) | 0.8929 (3) | 0.04656 (12) | 0.0393 (7) | |
| H3A | −0.3360 | 0.8827 | 0.0698 | 0.047* | |
| C5 | 0.1566 (5) | 0.8449 (3) | 0.11540 (12) | 0.0397 (6) | |
| H5A | 0.0364 | 0.8031 | 0.1409 | 0.048* | |
| H5B | 0.2338 | 0.7755 | 0.0924 | 0.048* | |
| O2 | −0.3312 (4) | 1.1107 (2) | 0.02581 (11) | 0.0574 (6) | |
| H2 | −0.4753 | 1.0904 | 0.0355 | 0.069* | |
| C9 | −0.0409 (6) | 0.8029 (3) | 0.33240 (11) | 0.0477 (8) | |
| C11 | 0.2748 (6) | 0.9224 (3) | 0.28326 (13) | 0.0469 (8) | |
| H11 | 0.3752 | 0.9984 | 0.2793 | 0.056* | |
| C4 | 0.0298 (5) | 0.9430 (3) | 0.07931 (11) | 0.0354 (6) | |
| H4 | −0.0271 | 1.0181 | 0.1029 | 0.042* | |
| C10 | 0.1045 (7) | 0.9131 (3) | 0.32584 (12) | 0.0518 (9) | |
| H10 | 0.0872 | 0.9842 | 0.3511 | 0.062* | |
| C7 | 0.1562 (6) | 0.7062 (3) | 0.25310 (12) | 0.0431 (7) | |
| H7 | 0.1760 | 0.6342 | 0.2284 | 0.052* | |
| C2 | −0.2121 (6) | 0.9991 (3) | 0.00288 (13) | 0.0429 (7) | |
| H2A | −0.2984 | 0.9661 | −0.0311 | 0.051* | |
| C6 | 0.2955 (5) | 0.8185 (3) | 0.24657 (11) | 0.0359 (6) | |
| C12 | −0.2297 (8) | 0.7949 (4) | 0.37844 (14) | 0.0703 (11) | |
| H12A | −0.3449 | 0.7228 | 0.3708 | 0.105* | |
| H12B | −0.3211 | 0.8779 | 0.3806 | 0.105* | |
| H12C | −0.1457 | 0.7788 | 0.4138 | 0.105* | |
| C1 | 0.0535 (5) | 1.0362 (3) | −0.00883 (12) | 0.0458 (8) | |
| H1A | 0.1114 | 0.9932 | −0.0433 | 0.055* | |
| H1B | 0.0689 | 1.1325 | −0.0134 | 0.055* | |
| C8 | −0.0126 (7) | 0.6997 (3) | 0.29599 (11) | 0.0478 (7) | |
| H8 | −0.1106 | 0.6229 | 0.3004 | 0.057* |
| S1 | 0.0386 (3) | 0.0384 (4) | 0.0411 (3) | 0.0040 (4) | −0.0029 (4) | 0.0060 (3) |
| O4 | 0.0423 (11) | 0.0401 (11) | 0.0385 (10) | 0.0032 (10) | −0.0059 (9) | 0.0067 (9) |
| O3 | 0.0547 (13) | 0.0456 (13) | 0.0562 (13) | −0.0053 (11) | −0.0067 (12) | −0.0107 (11) |
| O5 | 0.0423 (12) | 0.0619 (15) | 0.0633 (14) | −0.0097 (12) | −0.0080 (11) | 0.0074 (12) |
| O1 | 0.0308 (11) | 0.0596 (14) | 0.0452 (12) | −0.0038 (10) | −0.0002 (9) | 0.0146 (10) |
| O6 | 0.0641 (15) | 0.0438 (12) | 0.0518 (12) | 0.0142 (11) | 0.0056 (11) | 0.0022 (10) |
| C3 | 0.0351 (15) | 0.0448 (18) | 0.0381 (14) | −0.0006 (14) | 0.0023 (13) | 0.0003 (13) |
| C5 | 0.0376 (15) | 0.0412 (16) | 0.0404 (14) | −0.0025 (14) | −0.0027 (13) | −0.0007 (14) |
| O2 | 0.0416 (12) | 0.0519 (14) | 0.0788 (16) | 0.0049 (11) | 0.0027 (13) | 0.0074 (12) |
| C9 | 0.059 (2) | 0.0514 (19) | 0.0331 (13) | 0.0089 (17) | 0.0039 (14) | 0.0064 (14) |
| C11 | 0.061 (2) | 0.0351 (17) | 0.0441 (16) | 0.0009 (15) | −0.0106 (15) | 0.0002 (14) |
| C4 | 0.0322 (15) | 0.0393 (15) | 0.0347 (13) | −0.0035 (13) | 0.0008 (12) | 0.0030 (11) |
| C10 | 0.075 (2) | 0.0412 (18) | 0.0396 (16) | 0.0087 (17) | −0.0040 (16) | −0.0052 (15) |
| C7 | 0.0569 (19) | 0.0326 (15) | 0.0397 (15) | −0.0016 (15) | 0.0018 (15) | 0.0015 (13) |
| C2 | 0.0352 (16) | 0.0484 (19) | 0.0452 (16) | −0.0016 (14) | −0.0071 (14) | 0.0028 (15) |
| C6 | 0.0396 (15) | 0.0337 (15) | 0.0345 (13) | 0.0022 (13) | −0.0036 (12) | 0.0031 (12) |
| C12 | 0.084 (3) | 0.076 (3) | 0.0504 (19) | 0.009 (2) | 0.023 (2) | 0.001 (2) |
| C1 | 0.0361 (18) | 0.061 (2) | 0.0401 (15) | 0.0023 (14) | −0.0006 (13) | 0.0114 (15) |
| C8 | 0.0600 (18) | 0.0426 (16) | 0.0407 (14) | −0.0031 (18) | 0.0032 (16) | 0.0053 (12) |
| S1—O5 | 1.417 (2) | C9—C10 | 1.379 (5) |
| S1—O6 | 1.418 (2) | C9—C12 | 1.510 (4) |
| S1—O4 | 1.575 (2) | C11—C10 | 1.382 (5) |
| S1—C6 | 1.747 (3) | C11—C6 | 1.382 (4) |
| O4—C5 | 1.454 (3) | C11—H11 | 0.9500 |
| O3—C3 | 1.430 (4) | C4—H4 | 1.0000 |
| O3—H3 | 0.8400 | C10—H10 | 0.9500 |
| O1—C4 | 1.439 (3) | C7—C6 | 1.378 (4) |
| O1—C1 | 1.443 (3) | C7—C8 | 1.381 (4) |
| C3—C4 | 1.491 (4) | C7—H7 | 0.9500 |
| C3—C2 | 1.516 (4) | C2—C1 | 1.513 (4) |
| C3—H3A | 1.0000 | C2—H2A | 1.0000 |
| C5—C4 | 1.491 (4) | C12—H12A | 0.9800 |
| C5—H5A | 0.9900 | C12—H12B | 0.9800 |
| C5—H5B | 0.9900 | C12—H12C | 0.9800 |
| O2—C2 | 1.418 (4) | C1—H1A | 0.9900 |
| O2—H2 | 0.8400 | C1—H1B | 0.9900 |
| C9—C8 | 1.376 (4) | C8—H8 | 0.9500 |
| O5—S1—O6 | 119.47 (15) | C5—C4—H4 | 108.8 |
| O5—S1—O4 | 103.55 (13) | C3—C4—H4 | 108.8 |
| O6—S1—O4 | 109.01 (12) | C9—C10—C11 | 121.4 (3) |
| O5—S1—C6 | 110.27 (14) | C9—C10—H10 | 119.3 |
| O6—S1—C6 | 109.91 (14) | C11—C10—H10 | 119.3 |
| O4—S1—C6 | 103.24 (13) | C6—C7—C8 | 119.2 (3) |
| C5—O4—S1 | 117.54 (17) | C6—C7—H7 | 120.4 |
| C3—O3—H3 | 109.5 | C8—C7—H7 | 120.4 |
| C4—O1—C1 | 107.7 (2) | O2—C2—C1 | 107.8 (3) |
| O3—C3—C4 | 107.4 (2) | O2—C2—C3 | 110.3 (3) |
| O3—C3—C2 | 110.4 (2) | C1—C2—C3 | 102.2 (2) |
| C4—C3—C2 | 101.6 (2) | O2—C2—H2A | 112.0 |
| O3—C3—H3A | 112.3 | C1—C2—H2A | 112.0 |
| C4—C3—H3A | 112.3 | C3—C2—H2A | 112.0 |
| C2—C3—H3A | 112.3 | C7—C6—C11 | 121.1 (3) |
| O4—C5—C4 | 107.3 (2) | C7—C6—S1 | 120.5 (2) |
| O4—C5—H5A | 110.2 | C11—C6—S1 | 118.4 (2) |
| C4—C5—H5A | 110.2 | C9—C12—H12A | 109.5 |
| O4—C5—H5B | 110.2 | C9—C12—H12B | 109.5 |
| C4—C5—H5B | 110.2 | H12A—C12—H12B | 109.5 |
| H5A—C5—H5B | 108.5 | C9—C12—H12C | 109.5 |
| C2—O2—H2 | 109.5 | H12A—C12—H12C | 109.5 |
| C8—C9—C10 | 118.9 (3) | H12B—C12—H12C | 109.5 |
| C8—C9—C12 | 120.1 (3) | O1—C1—C2 | 107.0 (2) |
| C10—C9—C12 | 121.0 (3) | O1—C1—H1A | 110.3 |
| C10—C11—C6 | 118.4 (3) | C2—C1—H1A | 110.3 |
| C10—C11—H11 | 120.8 | O1—C1—H1B | 110.3 |
| C6—C11—H11 | 120.8 | C2—C1—H1B | 110.3 |
| O1—C4—C5 | 110.1 (2) | H1A—C1—H1B | 108.6 |
| O1—C4—C3 | 104.2 (2) | C9—C8—C7 | 120.9 (3) |
| C5—C4—C3 | 115.9 (2) | C9—C8—H8 | 119.5 |
| O1—C4—H4 | 108.8 | C7—C8—H8 | 119.5 |
| O5—S1—O4—C5 | 167.5 (2) | C4—C3—C2—C1 | 36.7 (3) |
| O6—S1—O4—C5 | 39.3 (2) | C8—C7—C6—C11 | 2.2 (4) |
| C6—S1—O4—C5 | −77.5 (2) | C8—C7—C6—S1 | −176.4 (2) |
| S1—O4—C5—C4 | 177.38 (18) | C10—C11—C6—C7 | −2.1 (4) |
| C1—O1—C4—C5 | 154.6 (2) | C10—C11—C6—S1 | 176.5 (2) |
| C1—O1—C4—C3 | 29.6 (3) | O5—S1—C6—C7 | −152.8 (2) |
| O4—C5—C4—O1 | 66.7 (3) | O6—S1—C6—C7 | −19.1 (3) |
| O4—C5—C4—C3 | −175.4 (2) | O4—S1—C6—C7 | 97.1 (3) |
| O3—C3—C4—O1 | 74.7 (3) | O5—S1—C6—C11 | 28.5 (3) |
| C2—C3—C4—O1 | −41.3 (3) | O6—S1—C6—C11 | 162.3 (2) |
| O3—C3—C4—C5 | −46.5 (3) | O4—S1—C6—C11 | −81.6 (2) |
| C2—C3—C4—C5 | −162.5 (2) | C4—O1—C1—C2 | −5.7 (3) |
| C8—C9—C10—C11 | 0.8 (5) | O2—C2—C1—O1 | 96.4 (3) |
| C12—C9—C10—C11 | −178.9 (3) | C3—C2—C1—O1 | −19.8 (3) |
| C6—C11—C10—C9 | 0.6 (5) | C10—C9—C8—C7 | −0.7 (5) |
| O3—C3—C2—O2 | 168.6 (2) | C12—C9—C8—C7 | 178.9 (3) |
| C4—C3—C2—O2 | −77.6 (3) | C6—C7—C8—C9 | −0.7 (5) |
| O3—C3—C2—C1 | −77.0 (3) |
| H··· | ||||
| O2—H2···O1i | 0.84 | 2.03 | 2.834 (4) | 160 |
| O3—H3···O3ii | 0.84 | 2.17 | 2.931 (2) | 151 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O1i | 0.84 | 2.03 | 2.834 (4) | 160 |
| O3—H3⋯O3ii | 0.84 | 2.17 | 2.931 (2) | 151 |
Symmetry codes: (i) ; (ii) .