Literature DB >> 24025334

Examination of matrix metalloproteinase-1 in solution: a preference for the pre-collagenolysis state.

Linda Cerofolini1, Gregg B Fields, Marco Fragai, Carlos F G C Geraldes, Claudio Luchinat, Giacomo Parigi, Enrico Ravera, Dmitri I Svergun, João M C Teixeira.   

Abstract

Catalysis of collagen degradation by matrix metalloproteinase 1 (MMP-1) has been proposed to critically rely on flexibility between the catalytic (CAT) and hemopexin-like (HPX) domains. A rigorous assessment of the most readily accessed conformations in solution is required to explain the onset of substrate recognition and collagenolysis. The present study utilized paramagnetic NMR spectroscopy and small angle x-ray scattering (SAXS) to calculate the maximum occurrence (MO) of MMP-1 conformations. The MMP-1 conformations with large MO values (up to 47%) are restricted into a relatively small conformational region. All conformations with high MO values differ largely from the closed MMP-1 structures obtained by x-ray crystallography. The MO of the latter is ~20%, which represents the upper limit for the presence of this conformation in the ensemble sampled by the protein in solution. In all the high MO conformations, the CAT and HPX domains are not in tight contact, and the residues of the HPX domain reported to be responsible for the binding to the collagen triple-helix are solvent exposed. Thus, overall analysis of the highest MO conformations indicated that MMP-1 in solution was poised to interact with collagen and then could readily proceed along the steps of collagenolysis.

Entities:  

Keywords:  Chemical Biology; Collagen; Collagenolysis; Matrix Metalloproteinase (MMP); Maximum Occurrence; Metalloprotease; Structural Biology

Mesh:

Substances:

Year:  2013        PMID: 24025334      PMCID: PMC3798536          DOI: 10.1074/jbc.M113.477240

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  59 in total

1.  Recognition pliability is coupled to structural heterogeneity: a calmodulin intrinsically disordered binding region complex.

Authors:  Malini Nagulapalli; Giacomo Parigi; Jing Yuan; Joerg Gsponer; George Deraos; Vladimir V Bamm; George Harauz; John Matsoukas; Maurits R R de Planque; Ioannis P Gerothanassis; M Madan Babu; Claudio Luchinat; Andreas G Tzakos
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  Experimentally exploring the conformational space sampled by domain reorientation in calmodulin.

Authors:  Ivano Bertini; Cristina Del Bianco; Ioannis Gelis; Nikolaus Katsaros; Claudio Luchinat; Giacomo Parigi; Massimiliano Peana; Alessandro Provenzani; Maria Antonietta Zoroddu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

3.  Maximum occurrence analysis of protein conformations for different distributions of paramagnetic metal ions within flexible two-domain proteins.

Authors:  Claudio Luchinat; Malini Nagulapalli; Giacomo Parigi; Luca Sgheri
Journal:  J Magn Reson       Date:  2011-12-30       Impact factor: 2.229

4.  MaxOcc: a web portal for maximum occurrence analysis.

Authors:  Ivano Bertini; Lucio Ferella; Claudio Luchinat; Giacomo Parigi; Maxim V Petoukhov; Enrico Ravera; Antonio Rosato; Dmitri I Svergun
Journal:  J Biomol NMR       Date:  2012-05-26       Impact factor: 2.835

5.  Conformational space of flexible biological macromolecules from average data.

Authors:  Ivano Bertini; Andrea Giachetti; Claudio Luchinat; Giacomo Parigi; Maxim V Petoukhov; Roberta Pierattelli; Enrico Ravera; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

6.  Insights into the structure and domain flexibility of full-length pro-matrix metalloproteinase-9/gelatinase B.

Authors:  Gabriel Rosenblum; Philippe E Van den Steen; Sidney R Cohen; J Günter Grossmann; Jessica Frenkel; Rotem Sertchook; Nelle Slack; Richard W Strange; Ghislain Opdenakker; Irit Sagi
Journal:  Structure       Date:  2007-10       Impact factor: 5.006

7.  Structural characterization of flexible proteins using small-angle X-ray scattering.

Authors:  Pau Bernadó; Efstratios Mylonas; Maxim V Petoukhov; Martin Blackledge; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

8.  Combining in silico tools and NMR data to validate protein-ligand structural models: application to matrix metalloproteinases.

Authors:  Ivano Bertini; Marco Fragai; Andrea Giachetti; Claudio Luchinat; Massimiliano Maletta; Giacomo Parigi; Kwon Joo Yeo
Journal:  J Med Chem       Date:  2005-12-01       Impact factor: 7.446

9.  The interface between catalytic and hemopexin domains in matrix metalloproteinase-1 conceals a collagen binding exosite.

Authors:  Laurence H Arnold; Louise E Butt; Stephen H Prior; Christopher M Read; Gregg B Fields; Andrew R Pickford
Journal:  J Biol Chem       Date:  2011-10-26       Impact factor: 5.157

10.  Structural basis for matrix metalloproteinase 1-catalyzed collagenolysis.

Authors:  Ivano Bertini; Marco Fragai; Claudio Luchinat; Maxime Melikian; Mirco Toccafondi; Janelle L Lauer; Gregg B Fields
Journal:  J Am Chem Soc       Date:  2012-01-19       Impact factor: 15.419

View more
  27 in total

1.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

Authors:  Witold Andrałojć; Konstantin Berlin; David Fushman; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Luca Sgheri
Journal:  J Biomol NMR       Date:  2015-06-05       Impact factor: 2.835

Review 2.  Biophysical studies of matrix metalloproteinase/triple-helix complexes.

Authors:  Gregg B Fields
Journal:  Adv Protein Chem Struct Biol       Date:  2014-11-07       Impact factor: 3.507

3.  FANTEN: a new web-based interface for the analysis of magnetic anisotropy-induced NMR data.

Authors:  Mauro Rinaldelli; Azzurra Carlon; Enrico Ravera; Giacomo Parigi; Claudio Luchinat
Journal:  J Biomol NMR       Date:  2014-11-22       Impact factor: 2.835

Review 4.  Matrix metalloproteinase collagenolysis in health and disease.

Authors:  Sabrina Amar; Lyndsay Smith; Gregg B Fields
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2017-04-26       Impact factor: 4.739

5.  Collagenolytic Matrix Metalloproteinase Activities toward Peptomeric Triple-Helical Substrates.

Authors:  Maciej J Stawikowski; Roma Stawikowska; Gregg B Fields
Journal:  Biochemistry       Date:  2015-05-05       Impact factor: 3.162

6.  Long-range paramagnetic NMR data can provide a closer look on metal coordination in metalloproteins.

Authors:  Linda Cerofolini; Tommaso Staderini; Stefano Giuntini; Enrico Ravera; Marco Fragai; Giacomo Parigi; Roberta Pierattelli; Claudio Luchinat
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

7.  Characterization and regulation of MT1-MMP cell surface-associated activity.

Authors:  Sonia Pahwa; Manishabrata Bhowmick; Sabrina Amar; Jian Cao; Alex Y Strongin; Rafael Fridman; Stephen J Weiss; Gregg B Fields
Journal:  Chem Biol Drug Des       Date:  2018-12-19       Impact factor: 2.817

8.  Prion Protein-Antibody Complexes Characterized by Chromatography-Coupled Small-Angle X-Ray Scattering.

Authors:  Lester Carter; Seung Joong Kim; Dina Schneidman-Duhovny; Jan Stöhr; Guillaume Poncet-Montange; Thomas M Weiss; Hiro Tsuruta; Stanley B Prusiner; Andrej Sali
Journal:  Biophys J       Date:  2015-08-18       Impact factor: 4.033

9.  The role of collagen charge clusters in the modulation of matrix metalloproteinase activity.

Authors:  Janelle L Lauer; Manishabrata Bhowmick; Dorota Tokmina-Roszyk; Yan Lin; Steven R Van Doren; Gregg B Fields
Journal:  J Biol Chem       Date:  2013-12-02       Impact factor: 5.157

10.  Importance of the Linker Region in Matrix Metalloproteinase-1 Domain Interactions.

Authors:  Warispreet Singh; Gregg B Fields; Christo Z Christov; Tatyana G Karabencheva-Christova
Journal:  RSC Adv       Date:  2016-02-24       Impact factor: 3.361

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.