Literature DB >> 22405011

Recognition pliability is coupled to structural heterogeneity: a calmodulin intrinsically disordered binding region complex.

Malini Nagulapalli1, Giacomo Parigi, Jing Yuan, Joerg Gsponer, George Deraos, Vladimir V Bamm, George Harauz, John Matsoukas, Maurits R R de Planque, Ioannis P Gerothanassis, M Madan Babu, Claudio Luchinat, Andreas G Tzakos.   

Abstract

Protein interactions within regulatory networks should adapt in a spatiotemporal-dependent dynamic environment, in order to process and respond to diverse and versatile cellular signals. However, the principles governing recognition pliability in protein complexes are not well understood. We have investigated a region of the intrinsically disordered protein myelin basic protein (MBP(145-165)) that interacts with calmodulin, but that also promiscuously binds other biomolecules (membranes, modifying enzymes). To characterize this interaction, we implemented an NMR spectroscopic approach that calculates, for each conformation of the complex, the maximum occurrence based on recorded pseudocontact shifts and residual dipolar couplings. We found that the MBP(145-165)-calmodulin interaction is characterized by structural heterogeneity. Quantitative comparative analysis indicated that distinct conformational landscapes of structural heterogeneity are sampled for different calmodulin-target complexes. Such structural heterogeneity in protein complexes could potentially explain the way that transient and promiscuous protein interactions are optimized and tuned in complex regulatory networks. Copyright Â
© 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22405011     DOI: 10.1016/j.str.2012.01.021

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  24 in total

1.  Examination of matrix metalloproteinase-1 in solution: a preference for the pre-collagenolysis state.

Authors:  Linda Cerofolini; Gregg B Fields; Marco Fragai; Carlos F G C Geraldes; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Dmitri I Svergun; João M C Teixeira
Journal:  J Biol Chem       Date:  2013-09-11       Impact factor: 5.157

2.  Dissecting the Energetics of Intrinsically Disordered Proteins via a Hybrid Experimental and Computational Approach.

Authors:  Junjie Zou; Carlos Simmerling; Daniel P Raleigh
Journal:  J Phys Chem B       Date:  2019-12-03       Impact factor: 2.991

3.  Calmodulin-Calcineurin Interaction beyond the Calmodulin-Binding Region Contributes to Calcineurin Activation.

Authors:  Bin Sun; Darin Vaughan; Svetlana Tikunova; Trevor P Creamer; Jonathan P Davis; P M Kekenes-Huskey
Journal:  Biochemistry       Date:  2019-09-19       Impact factor: 3.162

4.  Calmodulin and PI(3,4,5)P₃ cooperatively bind to the Itk pleckstrin homology domain to promote efficient calcium signaling and IL-17A production.

Authors:  Xinxin Wang; Scott E Boyken; Jiancheng Hu; Xiaolu Xu; Ryan P Rimer; Madeline A Shea; Andrey S Shaw; Amy H Andreotti; Yina H Huang
Journal:  Sci Signal       Date:  2014-08-05       Impact factor: 8.192

5.  Synthesis and characterization of a novel gadolinium-based contrast agent for magnetic resonance imaging of myelination.

Authors:  Luca Frullano; Junqing Zhu; Robert H Miller; Yanming Wang
Journal:  J Med Chem       Date:  2013-02-18       Impact factor: 7.446

6.  Evolution of disorder in Mediator complex and its functional relevance.

Authors:  Malini Nagulapalli; Sourobh Maji; Nidhi Dwivedi; Pradeep Dahiya; Jitendra K Thakur
Journal:  Nucleic Acids Res       Date:  2015-11-20       Impact factor: 16.971

7.  Pulse EPR-enabled interpretation of scarce pseudocontact shifts induced by lanthanide binding tags.

Authors:  Elwy H Abdelkader; Xuejun Yao; Akiva Feintuch; Luke A Adams; Luigi Aurelio; Bim Graham; Daniella Goldfarb; Gottfried Otting
Journal:  J Biomol NMR       Date:  2015-11-23       Impact factor: 2.835

8.  NMR structure of calmodulin complexed to an N-terminally acetylated α-synuclein peptide.

Authors:  James M Gruschus; Thai Leong Yap; Sara Pistolesi; Alexander S Maltsev; Jennifer C Lee
Journal:  Biochemistry       Date:  2013-05-08       Impact factor: 3.162

9.  Enterohaemorrhagic Escherichia coli exploits a tryptophan switch to hijack host f-actin assembly.

Authors:  Olli Aitio; Maarit Hellman; Brian Skehan; Tapio Kesti; John M Leong; Kalle Saksela; Perttu Permi
Journal:  Structure       Date:  2012-08-23       Impact factor: 5.006

10.  Structural and thermodynamic characterization of the recognition of the S100-binding peptides TRTK12 and p53 by calmodulin.

Authors:  Lucas N Wafer; Franco O Tzul; Pranav P Pandharipande; Scott A McCallum; George I Makhatadze
Journal:  Protein Sci       Date:  2014-07-02       Impact factor: 6.725

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