Literature DB >> 29218635

Long-range paramagnetic NMR data can provide a closer look on metal coordination in metalloproteins.

Linda Cerofolini1, Tommaso Staderini2, Stefano Giuntini1,2, Enrico Ravera1,2, Marco Fragai1,2,3, Giacomo Parigi1,2, Roberta Pierattelli1,2, Claudio Luchinat4,5.   

Abstract

Paramagnetic NMR data can be profitably incorporated in structural refinement protocols of metalloproteins or metal-substituted proteins, mostly as distance or angle restraints. However, they could in principle provide much more information, because the magnetic susceptibility of a paramagnetic metal ion is largely determined by its coordination sphere. This information can in turn be used to evaluate changes occurring in the coordination sphere of the metal when ligands (e.g.: inhibitors) are bound to the protein. This gives an experimental handle on the molecular structure in the vicinity of the metal which falls in the so-called blind sphere. The magnetic susceptibility anisotropy tensors of cobalt(II) and nickel(II) ions bound to human carbonic anhydrase II in free and inhibited forms have been determined. The change of the magnetic susceptibility anisotropy is directly linked to the binding mode of different ligands in the active site of the enzyme. Indication about the metal coordination sphere in the presence of an inhibitor in pharmaceutically relevant proteins could be important in the design of selective drugs with a structure-based approach.

Entities:  

Keywords:  Carbonic anhydrase; Cobalt(II) proteins; Magnetic susceptibility anisotropy; Nickel(II) proteins; Pseudocontact shifts

Mesh:

Substances:

Year:  2017        PMID: 29218635     DOI: 10.1007/s00775-017-1511-y

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  42 in total

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Authors:  Linda Cerofolini; Gregg B Fields; Marco Fragai; Carlos F G C Geraldes; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Dmitri I Svergun; João M C Teixeira
Journal:  J Biol Chem       Date:  2013-09-11       Impact factor: 5.157

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Journal:  Phys Rev Lett       Date:  2008-04-02       Impact factor: 9.161

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4.  1H NMR and UV-Vis spectroscopic characterization of sulfonamide complexes of nickel(II)-carbonic anhydrase. Resonance assignments based on NOE effects.

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Journal:  J Inorg Biochem       Date:  1992-03       Impact factor: 4.155

5.  PCS-based structure determination of protein-protein complexes.

Authors:  Tomohide Saio; Masashi Yokochi; Hiroyuki Kumeta; Fuyuhiko Inagaki
Journal:  J Biomol NMR       Date:  2010-03-19       Impact factor: 2.835

6.  Comparison of solution and crystal properties of Co(II)-substituted human carbonic anhydrase II.

Authors:  Balendu Sankara Avvaru; Daniel J Arenas; Chingkuang Tu; D B Tanner; Robert McKenna; David N Silverman
Journal:  Arch Biochem Biophys       Date:  2010-07-14       Impact factor: 4.013

7.  High-resolution structure determination of the CylR2 homodimer using paramagnetic relaxation enhancement and structure-based prediction of molecular alignment.

Authors:  Sigrun Rumpel; Stefan Becker; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2007-11-20       Impact factor: 2.835

8.  The interaction of acetate and formate with cobalt carbonic anhydrase. An NMR study.

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9.  Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution.

Authors:  Kyle D Brewer; Taulant Bacaj; Andrea Cavalli; Carlo Camilloni; James D Swarbrick; Jin Liu; Amy Zhou; Peng Zhou; Nicholas Barlow; Junjie Xu; Alpay B Seven; Eric A Prinslow; Rashmi Voleti; Daniel Häussinger; Alexandre M J J Bonvin; Diana R Tomchick; Michele Vendruscolo; Bim Graham; Thomas C Südhof; Josep Rizo
Journal:  Nat Struct Mol Biol       Date:  2015-06-01       Impact factor: 15.369

10.  Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences.

Authors:  Mauro Rinaldelli; Enrico Ravera; Vito Calderone; Giacomo Parigi; Garib N Murshudov; Claudio Luchinat
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-03-19
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  7 in total

1.  Non-crystallographic symmetry in proteins: Jahn-Teller-like and Butterfly-like effects?

Authors:  José Malanho Silva; Stefano Giuntini; Linda Cerofolini; Carlos F G C Geraldes; Anjos L Macedo; Enrico Ravera; Marco Fragai; Claudio Luchinat; Vito Calderone
Journal:  J Biol Inorg Chem       Date:  2018-11-23       Impact factor: 3.358

2.  Real-Time Insights into Biological Events: In-Cell Processes and Protein-Ligand Interactions.

Authors:  Linda Cerofolini; Stefano Giuntini; Letizia Barbieri; Matteo Pennestri; Anna Codina; Marco Fragai; Lucia Banci; Enrico Luchinat; Enrico Ravera
Journal:  Biophys J       Date:  2018-12-06       Impact factor: 4.033

Review 3.  A Double-Armed, Hydrophilic Transition Metal Complex as a Paramagnetic NMR Probe.

Authors:  Qing Miao; Wei-Min Liu; Thomas Kock; Anneloes Blok; Monika Timmer; Mark Overhand; Marcellus Ubbink
Journal:  Angew Chem Int Ed Engl       Date:  2019-08-13       Impact factor: 15.336

Review 4.  Effects of Ionic Liquids on Metalloproteins.

Authors:  Aashka Y Patel; Keertana S Jonnalagadda; Nicholas Paradis; Timothy D Vaden; Chun Wu; Gregory A Caputo
Journal:  Molecules       Date:  2021-01-19       Impact factor: 4.411

5.  Automated Determination of Nuclear Magnetic Resonance Chemical Shift Perturbations in Ligand Screening Experiments: The PICASSO Web Server.

Authors:  Vincenzo Laveglia; Andrea Giachetti; Linda Cerofolini; Kevin Haubrich; Marco Fragai; Alessio Ciulli; Antonio Rosato
Journal:  J Chem Inf Model       Date:  2021-11-29       Impact factor: 4.956

6.  Paramagnetic solid-state NMR assignment and novel chemical conversion of the aldehyde group to dihydrogen ortho ester and hemiacetal moieties in copper(ii)- and cobalt(ii)-pyridinecarboxaldehyde complexes.

Authors:  Ayelén F Crespi; Verónica M Sánchez; Daniel Vega; Ana L Pérez; Carlos D Brondino; Yamila Garro Linck; Paul Hodgkinson; Enrique Rodríguez-Castellón; Juan M Lázaro-Martínez
Journal:  RSC Adv       Date:  2021-06-09       Impact factor: 4.036

7.  The Photocatalyzed Thiol-ene reaction: A New Tag to Yield Fast, Selective and reversible Paramagnetic Tagging of Proteins.

Authors:  Maxime Denis; Charlotte Softley; Stefano Giuntini; Matteo Gentili; Enrico Ravera; Giacomo Parigi; Marco Fragai; Grzegorz Popowicz; Michael Sattler; Claudio Luchinat; Linda Cerofolini; Cristina Nativi
Journal:  Chemphyschem       Date:  2020-03-19       Impact factor: 3.102

  7 in total

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