Literature DB >> 21371706

Biobanking human endometrial tissue and blood specimens: standard operating procedure and importance to reproductive biology research and diagnostic development.

Elizabeth Sheldon1, Kim Chi Vo, Ramsey A McIntire, Lusine Aghajanova, Zara Zelenko, Juan C Irwin, Linda C Giudice.   

Abstract

OBJECTIVE: To develop a standard operating procedure (SOP) for collection, transport, storage of human endometrial tissue and blood samples, subject and specimen annotation, and establishing sample priorities.
DESIGN: The SOP synthesizes sound scientific procedures, the literature on ischemia research, sample collection and gene expression profiling, good laboratory practices, and the authors' experience of workflow and sample quality.
SETTING: The National Institutes of Health, University of California, San Francisco, Human Endometrial Tissue and DNA Bank. PATIENT(S): Women undergoing endometrial biopsy or hysterectomy for nonmalignant indications. INTERVENTION(S): Collecting, processing, storing, distributing endometrial tissue and blood samples under approved institutional review board protocols and written informed consent from participating subjects. MAIN OUTCOME MEASURE(S): Standard operating procedure. RESULT(S): The SOP addresses rigorous and consistent subject annotation, specimen processing and characterization, strict regulatory compliance, and a reference for researchers to track collection and storage times that may influence their research. CONCLUSION(S): The comprehensive and systematic approach to the procurement of human blood and endometrial tissue in this SOP ensures the high quality, reliability, and scientific usefulness of biospecimens made available to investigators by the National Institutes of Health, University of California, San Francisco, Human Endometrial Tissue and DNA Bank. The detail and perspective in this SOP also provides a blueprint for implementation of similar collection programs at other institutions.
Copyright © 2011 American Society for Reproductive Medicine. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2011        PMID: 21371706      PMCID: PMC3080464          DOI: 10.1016/j.fertnstert.2011.01.164

Source DB:  PubMed          Journal:  Fertil Steril        ISSN: 0015-0282            Impact factor:   7.329


  19 in total

1.  Effects of ischemia on gene expression.

Authors:  J Huang; R Qi; J Quackenbush; E Dauway; E Lazaridis; T Yeatman
Journal:  J Surg Res       Date:  2001-08       Impact factor: 2.192

2.  Tissue ischemia time affects gene and protein expression patterns within minutes following surgical tumor excision.

Authors:  Annika Spruessel; Garnet Steimann; Mira Jung; Sung A Lee; Theresa Carr; Anne-Kristin Fentz; Joerg Spangenberg; Carsten Zornig; Hartmut H Juhl; Kerstin A David
Journal:  Biotechniques       Date:  2004-06       Impact factor: 1.993

3.  Stability and heterogeneity of expression profiles in lung cancer specimens harvested following surgical resection.

Authors:  Fiona H Blackhall; Melania Pintilie; Dennis A Wigle; Igor Jurisica; Ni Liu; Nikolina Radulovich; Michael R Johnston; Shaf Keshavjee; Ming-Sound Tsao
Journal:  Neoplasia       Date:  2004 Nov-Dec       Impact factor: 5.715

Review 4.  Tissue handling for genome-wide expression analysis: a review of the issues, evidence, and opportunities.

Authors:  Fabiola Medeiros; C Ted Rigl; Glenda G Anderson; Shawn H Becker; Kevin C Halling
Journal:  Arch Pathol Lab Med       Date:  2007-12       Impact factor: 5.534

5.  Molecular phenotyping of human endometrium distinguishes menstrual cycle phases and underlying biological processes in normo-ovulatory women.

Authors:  S Talbi; A E Hamilton; K C Vo; S Tulac; M T Overgaard; C Dosiou; N Le Shay; C N Nezhat; R Kempson; B A Lessey; N R Nayak; L C Giudice
Journal:  Endocrinology       Date:  2005-11-23       Impact factor: 4.736

6.  Molecular classification of human endometrial cycle stages by transcriptional profiling.

Authors:  Anna P Ponnampalam; Gareth C Weston; Albert C Trajstman; Beatrice Susil; Peter A W Rogers
Journal:  Mol Hum Reprod       Date:  2004-10-22       Impact factor: 4.025

7.  Gene expression profiling of human endometrial receptivity on days LH+2 versus LH+7 by microarray technology.

Authors:  Anne Riesewijk; Julio Martín; Roselinde van Os; José Antonio Horcajadas; Jan Polman; Antonio Pellicer; Sietse Mosselman; Carlos Simón
Journal:  Mol Hum Reprod       Date:  2003-05       Impact factor: 4.025

8.  A critical analysis of the accuracy, reproducibility, and clinical utility of histologic endometrial dating in fertile women.

Authors:  Michael J Murray; William R Meyer; Richard J Zaino; Bruce A Lessey; Debra B Novotny; Karen Ireland; Donglin Zeng; Marc A Fritz
Journal:  Fertil Steril       Date:  2004-05       Impact factor: 7.329

9.  Expression profiling of endometrium from women with endometriosis reveals candidate genes for disease-based implantation failure and infertility.

Authors:  L C Kao; A Germeyer; S Tulac; S Lobo; J P Yang; R N Taylor; K Osteen; B A Lessey; L C Giudice
Journal:  Endocrinology       Date:  2003-07       Impact factor: 4.736

Review 10.  Application of functional genomics to primate endometrium: insights into biological processes.

Authors:  Linda C Giudice
Journal:  Reprod Biol Endocrinol       Date:  2006       Impact factor: 5.211

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  22 in total

Review 1.  Guidelines for the design, analysis and interpretation of 'omics' data: focus on human endometrium.

Authors:  Signe Altmäe; Francisco J Esteban; Anneli Stavreus-Evers; Carlos Simón; Linda Giudice; Bruce A Lessey; Jose A Horcajadas; Nick S Macklon; Thomas D'Hooghe; Cristina Campoy; Bart C Fauser; Lois A Salamonsen; Andres Salumets
Journal:  Hum Reprod Update       Date:  2013-09-29       Impact factor: 15.610

2.  Linkage of data from diverse data sources (LDS): a data combination model provides clinical data of corresponding specimens in biobanking information system.

Authors:  Okyaz Eminaga; Enver Özgür; Axel Semjonow; Jan Herden; Ilgar Akbarov; Ali Tok; Udo Engelmann; Sebastian Wille
Journal:  J Med Syst       Date:  2013-09-11       Impact factor: 4.460

3.  Limited Colonization Undermined by Inadequate Early Immune Responses Defines the Dynamics of Decidual Listeriosis.

Authors:  Gabrielle Rizzuto; Elisa Tagliani; Priyanka Manandhar; Adrian Erlebacher; Anna I Bakardjiev
Journal:  Infect Immun       Date:  2017-07-19       Impact factor: 3.441

4.  Cryopreservation and recovery of human endometrial epithelial cells with high viability, purity, and functional fidelity.

Authors:  Joseph C Chen; Jacquelyn R Hoffman; Ripla Arora; Lila A Perrone; Christian J Gonzalez-Gomez; Kim Chi Vo; Diana J Laird; Juan C Irwin; Linda C Giudice
Journal:  Fertil Steril       Date:  2015-10-26       Impact factor: 7.329

5.  Evaluation, validation and refinement of noninvasive diagnostic biomarkers for endometriosis (ENDOmarker): A protocol to phenotype bio-specimens for discovery and validation.

Authors:  Kurt Barnhart; Linda Giudice; Steve Young; Tracey Thomas; Michael P Diamond; James Segars; Wahid A Youssef; Stephen Krawetz; Nanette Santoro; Esther Eisenberg; Heping Zhang
Journal:  Contemp Clin Trials       Date:  2018-03-07       Impact factor: 2.226

6.  Global Transcriptome Abnormalities of the Eutopic Endometrium From Women With Adenomyosis.

Authors:  Christopher N Herndon; Lusine Aghajanova; Shaina Balayan; David Erikson; Fatima Barragan; Gabriel Goldfien; Kim Chi Vo; Shannon Hawkins; Linda C Giudice
Journal:  Reprod Sci       Date:  2016-05-27       Impact factor: 3.060

7.  Implementation of a comprehensive fertility biobanking initiative.

Authors:  Anjali Wignarajah; Ruben Alvero; Ruth B Lathi; Lusine Aghajanova; Michael Eisenberg; Virginia D Winn; Barry Behr; Gayathree Murugappan
Journal:  F S Sci       Date:  2022-01-13

8.  Human endometrial DNA methylome is cycle-dependent and is associated with gene expression regulation.

Authors:  Sahar Houshdaran; Zara Zelenko; Juan C Irwin; Linda C Giudice
Journal:  Mol Endocrinol       Date:  2014-05-30

9.  Seminal plasma induces global transcriptomic changes associated with cell migration, proliferation and viability in endometrial epithelial cells and stromal fibroblasts.

Authors:  Joseph C Chen; Brittni A Johnson; David W Erikson; Terhi T Piltonen; Fatima Barragan; Simon Chu; Nargis Kohgadai; Juan C Irwin; Warner C Greene; Linda C Giudice; Nadia R Roan
Journal:  Hum Reprod       Date:  2014-03-13       Impact factor: 6.918

10.  Coculturing human endometrial epithelial cells and stromal fibroblasts alters cell-specific gene expression and cytokine production.

Authors:  Joseph C Chen; David W Erikson; Terhi T Piltonen; Michelle R Meyer; Fatima Barragan; Ramsey H McIntire; John S Tamaresis; Kim Chi Vo; Linda C Giudice; Juan C Irwin
Journal:  Fertil Steril       Date:  2013-07-10       Impact factor: 7.329

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