Literature DB >> 23478348

Disease-targeted sequencing: a cornerstone in the clinic.

Heidi L Rehm1.   

Abstract

With the declining cost of sequencing and the ongoing discovery of disease genes, it is now possible to examine hundreds of genes in a single disease-targeted test. Although exome- and genome-sequencing approaches are beginning to compete, disease-targeted testing retains certain advantages and still holds a firm place in the diagnostic evaluation. Here I examine the current state of clinical disease-targeted sequencing and evaluate the benefits and challenges of incorporating sequencing tests into patient care.

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Year:  2013        PMID: 23478348      PMCID: PMC3786217          DOI: 10.1038/nrg3463

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  30 in total

1.  How doctors think, and how software can help avoid cognitive errors in diagnosis.

Authors:  Michael Segal
Journal:  Acta Paediatr       Date:  2007-09-10       Impact factor: 2.299

2.  One-stop shop for disease genes.

Authors:  Monya Baker
Journal:  Nature       Date:  2012-11-08       Impact factor: 49.962

3.  Prevalence of Fabry disease in a predominantly hypertensive population with left ventricular hypertrophy.

Authors:  Wim Terryn; Gert Deschoenmakere; Jan De Keyser; Wouter Meersseman; Wim Van Biesen; Brigitte Wuyts; Dimitri Hemelsoet; Hilbert Pascale; Julie De Backer; An De Paepe; Bruce Poppe; Raymond Vanholder
Journal:  Int J Cardiol       Date:  2012-07-16       Impact factor: 4.164

4.  A survey of the causes of sudden cardiac death in the under 35-year-age group.

Authors:  F Quigley; M Greene; D O'Connor; F Kelly
Journal:  Ir Med J       Date:  2005-09

Review 5.  Inherited cardiomyopathies: molecular genetics and clinical genetic testing in the postgenomic era.

Authors:  Polakit Teekakirikul; Melissa A Kelly; Heidi L Rehm; Neal K Lakdawala; Birgit H Funke
Journal:  J Mol Diagn       Date:  2012-12-27       Impact factor: 5.568

6.  Prevalence of fabry disease in a cohort of 508 unrelated patients with hypertrophic cardiomyopathy.

Authors:  Lorenzo Monserrat; Juan Ramón Gimeno-Blanes; Francisco Marín; Manuel Hermida-Prieto; Antonio García-Honrubia; Inmaculada Pérez; Xusto Fernández; Rosario de Nicolas; Gonzalo de la Morena; Eduardo Payá; Jordi Yagüe; Jesús Egido
Journal:  J Am Coll Cardiol       Date:  2007-12-18       Impact factor: 24.094

7.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

8.  Comprehensive mutation analysis for congenital muscular dystrophy: a clinical PCR-based enrichment and next-generation sequencing panel.

Authors:  C Alexander Valencia; Arunkanth Ankala; Devin Rhodenizer; Shruti Bhide; Martin Robert Littlejohn; Lisa Mari Keong; Anne Rutkowski; Susan Sparks; Carsten Bonnemann; Madhuri Hegde
Journal:  PLoS One       Date:  2013-01-11       Impact factor: 3.240

9.  Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants.

Authors:  Wenqing Fu; Timothy D O'Connor; Goo Jun; Hyun Min Kang; Goncalo Abecasis; Suzanne M Leal; Stacey Gabriel; Mark J Rieder; David Altshuler; Jay Shendure; Deborah A Nickerson; Michael J Bamshad; Joshua M Akey
Journal:  Nature       Date:  2012-11-28       Impact factor: 49.962

Review 10.  Improving the efficiency and relevance of evidence-based recommendations in the era of whole-genome sequencing: an EGAPP methods update.

Authors:  David L Veenstra; Margaret Piper; James E Haddow; Stephen G Pauker; Roger Klein; Carolyn Sue Richards; Sean R Tunis; Benjamin Djulbegovic; Michael Marrone; Jennifer S Lin; Alfred O Berg; Ned Calonge
Journal:  Genet Med       Date:  2012-09-06       Impact factor: 8.822

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  173 in total

1.  Screening of dementia genes by whole-exome sequencing in early-onset Alzheimer disease: input and lessons.

Authors:  Gaël Nicolas; David Wallon; Camille Charbonnier; Olivier Quenez; Stéphane Rousseau; Anne-Claire Richard; Anne Rovelet-Lecrux; Sophie Coutant; Kilan Le Guennec; Delphine Bacq; Jean-Guillaume Garnier; Robert Olaso; Anne Boland; Vincent Meyer; Jean-François Deleuze; Hans Markus Munter; Guillaume Bourque; Daniel Auld; Alexandre Montpetit; Mark Lathrop; Lucie Guyant-Maréchal; Olivier Martinaud; Jérémie Pariente; Adeline Rollin-Sillaire; Florence Pasquier; Isabelle Le Ber; Marie Sarazin; Bernard Croisile; Claire Boutoleau-Bretonnière; Catherine Thomas-Antérion; Claire Paquet; Mathilde Sauvée; Olivier Moreaud; Audrey Gabelle; François Sellal; Mathieu Ceccaldi; Ludivine Chamard; Frédéric Blanc; Thierry Frebourg; Dominique Campion; Didier Hannequin
Journal:  Eur J Hum Genet       Date:  2015-08-05       Impact factor: 4.246

Review 2.  Axons to Exons: the Molecular Diagnosis of Rare Neurological Diseases by Next-Generation Sequencing.

Authors:  Jodi Warman Chardon; Chandree Beaulieu; Taila Hartley; Kym M Boycott; David A Dyment
Journal:  Curr Neurol Neurosci Rep       Date:  2015-09       Impact factor: 5.081

Review 3.  Human genotype-phenotype databases: aims, challenges and opportunities.

Authors:  Anthony J Brookes; Peter N Robinson
Journal:  Nat Rev Genet       Date:  2015-11-10       Impact factor: 53.242

4.  Targeted next-generation sequencing to diagnose disorders of HDL cholesterol.

Authors:  Singh N Sadananda; Jia Nee Foo; Meng Tiak Toh; Lubomira Cermakova; Laia Trigueros-Motos; Teddy Chan; Herty Liany; Jennifer A Collins; Sima Gerami; Roshni R Singaraja; Michael R Hayden; Gordon A Francis; Jiri Frohlich; Chiea Chuen Khor; Liam R Brunham
Journal:  J Lipid Res       Date:  2015-08-08       Impact factor: 5.922

5.  The future of Clinical Utility Gene Cards in the context of next-generation sequencing diagnostic panels.

Authors:  Anna Dierking; Jörg Schmidtke
Journal:  Eur J Hum Genet       Date:  2014-02-19       Impact factor: 4.246

Review 6.  Applications of high-throughput DNA sequencing to benign hematology.

Authors:  Vijay G Sankaran; Patrick G Gallagher
Journal:  Blood       Date:  2013-09-10       Impact factor: 22.113

Review 7.  Genetic Testing in Pediatric Epilepsy.

Authors:  Tristan T Sands; Hyunmi Choi
Journal:  Curr Neurol Neurosci Rep       Date:  2017-05       Impact factor: 5.081

Review 8.  Genetics of sudden cardiac death caused by ventricular arrhythmias.

Authors:  Roos F Marsman; Hanno L Tan; Connie R Bezzina
Journal:  Nat Rev Cardiol       Date:  2013-12-10       Impact factor: 32.419

9.  Clinical Validity of Genes for Heritable Thoracic Aortic Aneurysm and Dissection.

Authors:  Marjolijn Renard; Catherine Francis; Rajarshi Ghosh; Alan F Scott; P Dane Witmer; Lesley C Adès; Gregor U Andelfinger; Pauline Arnaud; Catherine Boileau; Bert L Callewaert; Dongchuan Guo; Nadine Hanna; Mark E Lindsay; Hiroko Morisaki; Takayuki Morisaki; Nicholas Pachter; Leema Robert; Lut Van Laer; Harry C Dietz; Bart L Loeys; Dianna M Milewicz; Julie De Backer
Journal:  J Am Coll Cardiol       Date:  2018-08-07       Impact factor: 24.094

Review 10.  A challenge to the striking genotypic heterogeneity of retinitis pigmentosa: a better understanding of the pathophysiology using the newest genetic strategies.

Authors:  F S Sorrentino; C E Gallenga; C Bonifazzi; P Perri
Journal:  Eye (Lond)       Date:  2016-08-26       Impact factor: 3.775

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