Literature DB >> 24008998

Some experiences and opportunities for big data in translational research.

Christopher G Chute1, Mollie Ullman-Cullere, Grant M Wood, Simon M Lin, Min He, Jyotishman Pathak.   

Abstract

Health care has become increasingly information intensive. The advent of genomic data, integrated into patient care, significantly accelerates the complexity and amount of clinical data. Translational research in the present day increasingly embraces new biomedical discovery in this data-intensive world, thus entering the domain of "big data." The Electronic Medical Records and Genomics consortium has taught us many lessons, while simultaneously advances in commodity computing methods enable the academic community to affordably manage and process big data. Although great promise can emerge from the adoption of big data methods and philosophy, the heterogeneity and complexity of clinical data, in particular, pose additional challenges for big data inferencing and clinical application. However, the ultimate comparability and consistency of heterogeneous clinical information sources can be enhanced by existing and emerging data standards, which promise to bring order to clinical data chaos. Meaningful Use data standards in particular have already simplified the task of identifying clinical phenotyping patterns in electronic health records.

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Year:  2013        PMID: 24008998      PMCID: PMC3906918          DOI: 10.1038/gim.2013.121

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  32 in total

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3.  Normalized names for clinical drugs: RxNorm at 6 years.

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4.  Systematized nomenclature of medicine clinical terms (SNOMED CT) to represent computed tomography procedures.

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5.  Pitfalls of merging GWAS data: lessons learned in the eMERGE network and quality control procedures to maintain high data quality.

Authors:  Rebecca L Zuvich; Loren L Armstrong; Suzette J Bielinski; Yuki Bradford; Christopher S Carlson; Dana C Crawford; Andrew T Crenshaw; Mariza de Andrade; Kimberly F Doheny; Jonathan L Haines; M Geoffrey Hayes; Gail P Jarvik; Lan Jiang; Iftikhar J Kullo; Rongling Li; Hua Ling; Teri A Manolio; Martha E Matsumoto; Catherine A McCarty; Andrew N McDavid; Daniel B Mirel; Lana M Olson; Justin E Paschall; Elizabeth W Pugh; Luke V Rasmussen; Laura J Rasmussen-Torvik; Stephen D Turner; Russell A Wilke; Marylyn D Ritchie
Journal:  Genet Epidemiol       Date:  2011-12       Impact factor: 2.135

6.  A map of human genome variation from population-scale sequencing.

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7.  An evaluation of the rates of repeat notifiable disease reporting and patient crossover using a health information exchange-based automated electronic laboratory reporting system.

Authors:  Judy Gichoya; Roland E Gamache; Daniel J Vreeman; Brian E Dixon; John T Finnell; Shaun Grannis
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8.  Web-based synoptic reporting for cancer checklists.

Authors:  Brett W Baskovich; Robert W Allan
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9.  Searching for SNPs with cloud computing.

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Review 10.  Implementing genomic medicine in the clinic: the future is here.

Authors:  Teri A Manolio; Rex L Chisholm; Brad Ozenberger; Dan M Roden; Marc S Williams; Richard Wilson; David Bick; Erwin P Bottinger; Murray H Brilliant; Charis Eng; Kelly A Frazer; Bruce Korf; David H Ledbetter; James R Lupski; Clay Marsh; David Mrazek; Michael F Murray; Peter H O'Donnell; Daniel J Rader; Mary V Relling; Alan R Shuldiner; David Valle; Richard Weinshilboum; Eric D Green; Geoffrey S Ginsburg
Journal:  Genet Med       Date:  2013-01-10       Impact factor: 8.822

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  31 in total

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Authors:  K Regan; P R O Payne
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3.  Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.

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4.  Supporting interoperability of genetic data with LOINC.

Authors:  Jamalynne Deckard; Clement J McDonald; Daniel J Vreeman
Journal:  J Am Med Inform Assoc       Date:  2015-02-05       Impact factor: 4.497

5.  A Framework for Data Quality Assessment in Clinical Research Datasets.

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Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

Review 6.  The future of murine sepsis and trauma research models.

Authors:  Philip A Efron; Alicia M Mohr; Frederick A Moore; Lyle L Moldawer
Journal:  J Leukoc Biol       Date:  2015-06-01       Impact factor: 4.962

Review 7.  Bioinformatics Methods and Tools to Advance Clinical Care. Findings from the Yearbook 2015 Section on Bioinformatics and Translational Informatics.

Authors:  L F Soualmia; T Lecroq
Journal:  Yearb Med Inform       Date:  2015-08-13

Review 8.  "Big data" and the electronic health record.

Authors:  M K Ross; W Wei; L Ohno-Machado
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9.  LBVS: an online platform for ligand-based virtual screening using publicly accessible databases.

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10.  Merging Electronic Health Record Data and Genomics for Cardiovascular Research: A Science Advisory From the American Heart Association.

Authors:  Jennifer L Hall; John J Ryan; Bruce E Bray; Candice Brown; David Lanfear; L Kristin Newby; Mary V Relling; Neil J Risch; Dan M Roden; Stanley Y Shaw; James E Tcheng; Jessica Tenenbaum; Thomas N Wang; William S Weintraub
Journal:  Circ Cardiovasc Genet       Date:  2016-03-14
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