Literature DB >> 24002739

Accurate molecular structure and spectroscopic properties of nucleobases: a combined computational-microwave investigation of 2-thiouracil as a case study.

Cristina Puzzarini1, Malgorzata Biczysko, Vincenzo Barone, Isabel Peña, Carlos Cabezas, José L Alonso.   

Abstract

The computational composite scheme purposely set up for accurately describing the electronic structure and spectroscopic properties of small biomolecules has been applied to the first study of the rotational spectrum of 2-thiouracil. The experimental investigation was made possible thanks to the combination of the laser ablation technique with Fourier transform microwave spectrometers. The joint experimental-computational study allowed us to determine the accurate molecular structure and spectroscopic properties of the title molecule, but more importantly, it demonstrates a reliable approach for the accurate investigation of isolated small biomolecules.

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Year:  2013        PMID: 24002739      PMCID: PMC4596004          DOI: 10.1039/c3cp52347k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  34 in total

1.  Vibrational frequencies and structure of 2-thiouracil by Hartree-Fock, post-Hartree-Fock and density functional methods.

Authors:  M Alcolea Palafox; V K Rastogi; R P Tanwar; Lalit Mittal
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2003-09       Impact factor: 4.098

2.  Harmonic and Anharmonic Vibrational Frequency Calculations with the Double-Hybrid B2PLYP Method: Analytic Second Derivatives and Benchmark Studies.

Authors:  Malgorzata Biczysko; Pawel Panek; Giovanni Scalmani; Julien Bloino; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2010-06-16       Impact factor: 6.006

3.  General Perturbative Approach for Spectroscopy, Thermodynamics, and Kinetics: Methodological Background and Benchmark Studies.

Authors:  Julien Bloino; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2012-02-29       Impact factor: 6.006

4.  Rotational spectral signatures of four tautomers of guanine.

Authors:  José L Alonso; Isabel Peña; Juan C López; Vanesa Vaquero
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

5.  A broadband Fourier transform microwave spectrometer based on chirped pulse excitation.

Authors:  Gordon G Brown; Brian C Dian; Kevin O Douglass; Scott M Geyer; Steven T Shipman; Brooks H Pate
Journal:  Rev Sci Instrum       Date:  2008-05       Impact factor: 1.523

6.  Unveiling the sweet conformations of D-fructopyranose.

Authors:  Celina Bermúdez; Isabel Peña; Carlos Cabezas; Adam M Daly; José L Alonso
Journal:  Chemphyschem       Date:  2013-02-10       Impact factor: 3.102

7.  Tautomerism in 4-hydroxypyrimidine, S-methyl-2-thiouracil, and 2-thiouracil.

Authors:  Barbara M Giuliano; Vitaliy Feyer; Kevin C Prince; Marcello Coreno; Luca Evangelisti; Sonia Melandri; Walther Caminati
Journal:  J Phys Chem A       Date:  2010-11-08       Impact factor: 2.781

Review 8.  Metabolism of aromatic and heterocyclic amine bladder carcinogens: bioanalytical considerations.

Authors:  M B Mattammal; V M Lakshmi; T V Zenser; B B Davis
Journal:  J Pharm Biomed Anal       Date:  1990       Impact factor: 3.935

9.  2-Thio derivatives of dUrd and 5-fluoro-dUrd and their 5'-monophosphates: synthesis, interaction with tumor thymidylate synthase, and in vitro antitumor activity.

Authors:  M Bretner; T Kulikowski; J M Dzik; M Balińska; W Rode; D Shugar
Journal:  J Med Chem       Date:  1993-11-12       Impact factor: 7.446

10.  The conformational locking of asparagine.

Authors:  Carlos Cabezas; Marcelino Varela; Isabel Peña; Santiago Mata; Juan C López; José L Alonso
Journal:  Chem Commun (Camb)       Date:  2012-05-10       Impact factor: 6.222

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  11 in total

1.  CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Paola Cimino; Emanuele Penocchio; Cristina Puzzarini
Journal:  J Chem Theory Comput       Date:  2015-08-07       Impact factor: 6.006

2.  VMS-ROT: A New Module of the Virtual Multifrequency Spectrometer for Simulation, Interpretation, and Fitting of Rotational Spectra.

Authors:  Daniele Licari; Nicola Tasinato; Lorenzo Spada; Cristina Puzzarini; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2017-08-11       Impact factor: 6.006

3.  The Role of State-of-the-Art Quantum-Chemical Calculations in Astrochemistry: Formation Route and Spectroscopy of Ethanimine as a Paradigmatic Case.

Authors:  Carmen Baiano; Jacopo Lupi; Nicola Tasinato; Cristina Puzzarini; Vincenzo Barone
Journal:  Molecules       Date:  2020-06-22       Impact factor: 4.411

Review 4.  Gas-Phase Infrared Spectroscopy of Neutral Peptides: Insights from the Far-IR and THz Domain.

Authors:  Sjors Bakels; Marie-Pierre Gaigeot; Anouk M Rijs
Journal:  Chem Rev       Date:  2020-02-19       Impact factor: 60.622

5.  State-of-the-Art Quantum Chemistry Meets Variable Reaction Coordinate Transition State Theory to Solve the Puzzling Case of the H2S + Cl System.

Authors:  Jacopo Lupi; Cristina Puzzarini; Carlo Cavallotti; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2020-07-15       Impact factor: 6.006

6.  Structural features of the carbon-sulfur chemical bond: a semi-experimental perspective.

Authors:  Emanuele Penocchio; Marco Mendolicchio; Nicola Tasinato; Vincenzo Barone
Journal:  Can J Chem       Date:  2016-07-28       Impact factor: 1.118

7.  Dispersion corrected DFT approaches for anharmonic vibrational frequency calculations: nucleobases and their dimers.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Susanna Monti; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2014-02-17       Impact factor: 3.676

8.  Accurate molecular structures and infrared spectra of trans-2,3-dideuterooxirane, methyloxirane, and trans-2,3-dimethyloxirane.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Cristina Puzzarini
Journal:  J Chem Phys       Date:  2014-07-21       Impact factor: 3.488

9.  A Static Picture of the Relaxation and Intersystem Crossing Mechanisms of Photoexcited 2-Thiouracil.

Authors:  Sebastian Mai; Philipp Marquetand; Leticia González
Journal:  J Phys Chem A       Date:  2015-08-28       Impact factor: 2.781

10.  Looking for the Elusive Imine Tautomer of Creatinine: Different States of Aggregation Studied by Quantum Chemistry and Molecular Spectroscopy.

Authors:  Iker Léon; Nicola Tasinato; Lorenzo Spada; Elena R Alonso; Santiago Mata; Alice Balbi; Cristina Puzzarini; Jose L Alonso; Vincenzo Barone
Journal:  Chempluschem       Date:  2021-07-13       Impact factor: 2.863

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