Literature DB >> 26593363

General Perturbative Approach for Spectroscopy, Thermodynamics, and Kinetics: Methodological Background and Benchmark Studies.

Julien Bloino1,2, Malgorzata Biczysko3, Vincenzo Barone1.   

Abstract

A general second-order perturbative approach based on resonance- and threshold-free computations of vibrational properties is introduced and validated. It starts from the evaluation of accurate anharmonic zero-point vibrational energies for semirigid molecular systems, in a way that avoids any singularity. Next, the degeneracy corrected second-order perturbation theory (DCPT2) is extended to a hybrid version (HDCPT2), allowing for reliable computations even in cases where the original formulation faces against severe problems, including also an automatic treatment of internal rotations through the hindered-rotor model. These approaches, in conjunction with the so-called simple perturbation theory (SPT) reformulated to treat consistently both energy minima and transition states, allow one to evaluate degeneracy-corrected partition functions further used to obtain vibrational contributions to properties like enthalpy, entropy, or specific heat. The spectroscopic accuracy of the HDCPT2 model has been also validated by computing anharmonic vibrational frequencies for a number of small-to-medium size, closed- and open-shell, molecular systems, within an accuracy close to that of well established but threshold-dependent perturbative-variational models. The reliability of the B3LYP/aug-N07D model for anharmonic computations is also highlighted, with possible improvements provided by the B2PLYP/aug-cc-pVTZ models or by hybrid schemes. On a general grounds, the overall approach proposed in the present work is able to provide the proper accuracy to support experimental investigations even for large molecular systems of biotechnological interest in a fully automated manner, without any ad hoc scaling procedure. This means a fully ab initio evaluation of thermodynamic and spectroscopic properties with an overall accuracy of about, or better than, 1 kJ mol(-1), 1 J mol(-1) K(-1) and 10 cm(-1) for enthalpies, entropies, and vibrational frequencies, respectively.

Entities:  

Year:  2012        PMID: 26593363     DOI: 10.1021/ct200814m

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  40 in total

1.  Development of a virtual spectrometer for chiroptical spectroscopies: the case of nicotine.

Authors:  Franco Egidi; Julien Bloino; Chiara Cappelli; Vincenzo Barone
Journal:  Chirality       Date:  2013-07-16       Impact factor: 2.437

2.  Anharmonic theoretical simulations of infrared spectra of halogenated organic compounds.

Authors:  Ivan Carnimeo; Cristina Puzzarini; Nicola Tasinato; Paolo Stoppa; Andrea Pietropolli Charmet; Malgorzata Biczysko; Chiara Cappelli; Vincenzo Barone
Journal:  J Chem Phys       Date:  2013-08-21       Impact factor: 3.488

3.  Spectroscopic Characterization of Key Aromatic Molecules: A Route toward The Origin of Life.

Authors:  Cristina Puzzarini; Alberto Baiardi; Julien Bloino; Vincenzo Barone; Thomas E Murphy; Dennis Drew; Ashraf Ali
Journal:  Astron J       Date:  2017-08-04       Impact factor: 6.263

4.  Virtual eyes for technology and cultural heritage: toward computational strategy for new and old indigo-based dyes.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Camille Latouche; Andrea Pasti
Journal:  Theor Chem Acc       Date:  2015-11-11       Impact factor: 1.702

5.  Anharmonic vibrational spectroscopy of polycyclic aromatic hydrocarbons (PAHs).

Authors:  Giacomo Mulas; Cyril Falvo; Patrick Cassam-Chenaï; Christine Joblin
Journal:  J Chem Phys       Date:  2018-10-14       Impact factor: 3.488

6.  Effective Inclusion of Mechanical and Electrical Anharmonicity in Excited Electronic States: VPT2-TDDFT Route.

Authors:  Franco Egidi; David B Williams-Young; Alberto Baiardi; Julien Bloino; Giovanni Scalmani; Michael J Frisch; Xiaosong Li; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2017-05-24       Impact factor: 6.006

7.  The Virtual Multifrequency Spectrometer: a new paradigm for spectroscopy.

Authors:  Vincenzo Barone
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2016 Mar/Apr

8.  On the competition between weak O-H···F and C-H···F hydrogen bonds, in cooperation with C-H···O contacts, in the difluoromethane - tert-butyl alcohol cluster.

Authors:  Lorenzo Spada; Nicola Tasinato; Giulio Bosi; Fanny Vazart; Vincenzo Barone; Cristina Puzzarini
Journal:  J Mol Spectrosc       Date:  2017-04-04       Impact factor: 1.507

9.  Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-28       Impact factor: 3.676

10.  A robust and effective time-independent route to the calculation of Resonance Raman spectra of large molecules in condensed phases with the inclusion of Duschinsky, Herzberg-Teller, anharmonic, and environmental effects.

Authors:  Franco Egidi; Julien Bloino; Chiara Cappelli; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2014-01-14       Impact factor: 6.006

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