Literature DB >> 23994240

Yule-generated trees constrained by node imbalance.

Filippo Disanto1, Anna Schlizio, Thomas Wiehe.   

Abstract

The Yule process generates a class of binary trees which is fundamental to population genetic models and other applications in evolutionary biology. In this paper, we introduce a family of sub-classes of ranked trees, called Ω-trees, which are characterized by imbalance of internal nodes. The degree of imbalance is defined by an integer 0 ≤ ω. For caterpillars, the extreme case of unbalanced trees, ω = 0. Under models of neutral evolution, for instance the Yule model, trees with small ω are unlikely to occur by chance. Indeed, imbalance can be a signature of permanent selection pressure, such as observable in the genealogies of certain pathogens. From a mathematical point of view it is interesting to observe that the space of Ω-trees maintains several statistical invariants although it is drastically reduced in size compared to the space of unconstrained Yule trees. Using generating functions, we study here some basic combinatorial properties of Ω-trees. We focus on the distribution of the number of subtrees with two leaves. We show that expectation and variance of this distribution match those for unconstrained trees already for very small values of ω.
Copyright © 2013 Elsevier Inc. All rights reserved.

Keywords:  Binary rooted tree; Generating function; Subtree; Tree imbalance; Yule model

Mesh:

Year:  2013        PMID: 23994240     DOI: 10.1016/j.mbs.2013.08.008

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  3 in total

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Authors:  Filippo Disanto; Noah A Rosenberg
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2.  Detecting Recent Positive Selection with a Single Locus Test Bipartitioning the Coalescent Tree.

Authors:  Zongfeng Yang; Junrui Li; Thomas Wiehe; Haipeng Li
Journal:  Genetics       Date:  2017-12-07       Impact factor: 4.562

3.  Robust detection of natural selection using a probabilistic model of tree imbalance.

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Journal:  Genetics       Date:  2022-03-03       Impact factor: 4.562

  3 in total

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