Literature DB >> 23987523

Substrate-triggered addition of dioxygen to the diferrous cofactor of aldehyde-deformylating oxygenase to form a diferric-peroxide intermediate.

Maria E Pandelia1, Ning Li2, Hanne Nørgaard1, Douglas M Warui2, Lauren J Rajakovich2, Wei-Chen Chang1, Squire J Booker1,2, Carsten Krebs1,2, J Martin Bollinger1,2.   

Abstract

Cyanobacterial aldehyde-deformylating oxygenases (ADOs) belong to the ferritin-like diiron-carboxylate superfamily of dioxygen-activating proteins. They catalyze conversion of saturated or monounsaturated C(n) fatty aldehydes to formate and the corresponding C(n-1) alkanes or alkenes, respectively. This unusual, apparently redox-neutral transformation actually requires four electrons per turnover to reduce the O2 cosubstrate to the oxidation state of water and incorporates one O-atom from O2 into the formate coproduct. We show here that the complex of the diiron(II/II) form of ADO from Nostoc punctiforme (Np) with an aldehyde substrate reacts with O2 to form a colored intermediate with spectroscopic properties suggestive of a Fe2(III/III) complex with a bound peroxide. Its Mössbauer spectra reveal that the intermediate possesses an antiferromagnetically (AF) coupled Fe2(III/III) center with resolved subsites. The intermediate is long-lived in the absence of a reducing system, decaying slowly (t(1/2) ~ 400 s at 5 °C) to produce a very modest yield of formate (<0.15 enzyme equivalents), but reacts rapidly with the fully reduced form of 1-methoxy-5-methylphenazinium methylsulfate ((MeO)PMS) to yield product, albeit at only ~50% of the maximum theoretical yield (owing to competition from one or more unproductive pathway). The results represent the most definitive evidence to date that ADO can use a diiron cofactor (rather than a homo- or heterodinuclear cluster involving another transition metal) and provide support for a mechanism involving attack on the carbonyl of the bound substrate by the reduced O2 moiety to form a Fe2(III/III)-peroxyhemiacetal complex, which undergoes reductive O-O-bond cleavage, leading to C1-C2 radical fragmentation and formation of the alk(a/e)ne and formate products.

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Year:  2013        PMID: 23987523      PMCID: PMC3869994          DOI: 10.1021/ja405047b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  66 in total

1.  (Mu-1,2-peroxo)diiron(III/III) complex as a precursor to the diiron(III/IV) intermediate X in the assembly of the iron-radical cofactor of ribonucleotide reductase from mouse.

Authors:  Danny Yun; Ricardo García-Serres; Brandon M Chicalese; Young H An; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2007-01-27       Impact factor: 3.162

Review 2.  Cyanobacterial alkane biosynthesis further expands the catalytic repertoire of the ferritin-like 'di-iron-carboxylate' proteins.

Authors:  Carsten Krebs; J Martin Bollinger; Squire J Booker
Journal:  Curr Opin Chem Biol       Date:  2011-04       Impact factor: 8.822

3.  Ferric superoxide and ferric hydroxide are used in the catalytic mechanism of hydroxyethylphosphonate dioxygenase: a density functional theory investigation.

Authors:  Hajime Hirao; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2010-12-01       Impact factor: 15.419

4.  Dioxygen Activation and Methane Hydroxylation by Soluble Methane Monooxygenase: A Tale of Two Irons and Three Proteins A list of abbreviations can be found in Section 7.

Authors:  Maarten Merkx; Daniel A. Kopp; Matthew H. Sazinsky; Jessica L. Blazyk; Jens Müller; Stephen J. Lippard
Journal:  Angew Chem Int Ed Engl       Date:  2001-08-03       Impact factor: 15.336

5.  Evidence for C-H cleavage by an iron-superoxide complex in the glycol cleavage reaction catalyzed by myo-inositol oxygenase.

Authors:  Gang Xing; Yinghui Diao; Lee M Hoffart; Eric W Barr; K Sandeep Prabhu; Ryan J Arner; C Channa Reddy; Carsten Krebs; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

6.  Conversion of fatty aldehydes to alka(e)nes and formate by a cyanobacterial aldehyde decarbonylase: cryptic redox by an unusual dimetal oxygenase.

Authors:  Ning Li; Hanne Nørgaard; Douglas M Warui; Squire J Booker; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2011-04-04       Impact factor: 15.419

Review 7.  Dioxygen activation in soluble methane monooxygenase.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2011-03-10       Impact factor: 22.384

8.  Revisiting the mechanism of dioxygen activation in soluble methane monooxygenase from M. capsulatus (Bath): evidence for a multi-step, proton-dependent reaction pathway.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

9.  Substrate-triggered formation and remarkable stability of the C-H bond-cleaving chloroferryl intermediate in the aliphatic halogenase, SyrB2.

Authors:  Megan L Matthews; Courtney M Krest; Eric W Barr; Frédéric H Vaillancourt; Christopher T Walsh; Michael T Green; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2009-05-26       Impact factor: 3.162

10.  A new dawn for industrial photosynthesis.

Authors:  Dan E Robertson; Stuart A Jacobson; Frederick Morgan; David Berry; George M Church; Noubar B Afeyan
Journal:  Photosynth Res       Date:  2011-02-13       Impact factor: 3.573

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  29 in total

Review 1.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

2.  An unusual peroxo intermediate of the arylamine oxygenase of the chloramphenicol biosynthetic pathway.

Authors:  Thomas M Makris; Van V Vu; Katlyn K Meier; Anna J Komor; Brent S Rivard; Eckard Münck; Lawrence Que; John D Lipscomb
Journal:  J Am Chem Soc       Date:  2015-01-21       Impact factor: 15.419

3.  Conversion of Aldehyde to Alkane by a Peroxoiron(III) Complex: A Functional Model for the Cyanobacterial Aldehyde-Deformylating Oxygenase.

Authors:  Alireza Shokri; Lawrence Que
Journal:  J Am Chem Soc       Date:  2015-06-10       Impact factor: 15.419

4.  Evidence for a Di-μ-oxo Diamond Core in the Mn(IV)/Fe(IV) Activation Intermediate of Ribonucleotide Reductase from Chlamydia trachomatis.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; Carsten Krebs; J Martin Bollinger; Alexey Silakov; Christopher J Pollock
Journal:  J Am Chem Soc       Date:  2017-01-27       Impact factor: 15.419

Review 5.  Metabolic design for cyanobacterial chemical synthesis.

Authors:  John W K Oliver; Shota Atsumi
Journal:  Photosynth Res       Date:  2014-04-10       Impact factor: 3.573

6.  Substrate-Triggered Formation of a Peroxo-Fe2(III/III) Intermediate during Fatty Acid Decarboxylation by UndA.

Authors:  Bo Zhang; Lauren J Rajakovich; Devon Van Cura; Elizabeth J Blaesi; Andrew J Mitchell; Christina R Tysoe; Xuejun Zhu; Bennett R Streit; Zhe Rui; Wenjun Zhang; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2019-09-10       Impact factor: 15.419

Review 7.  Divergent mechanisms of iron-containing enzymes for hydrocarbon biosynthesis.

Authors:  Courtney E Wise; Job L Grant; Jose A Amaya; Steven C Ratigan; Chun H Hsieh; Olivia M Manley; Thomas M Makris
Journal:  J Biol Inorg Chem       Date:  2016-12-21       Impact factor: 3.358

8.  Addition of formate dehydrogenase increases the production of renewable alkane from an engineered metabolic pathway.

Authors:  Juthamas Jaroensuk; Pattarawan Intasian; Cholpisit Kiattisewee; Pobthum Munkajohnpon; Paweenapon Chunthaboon; Supacha Buttranon; Duangthip Trisrivirat; Thanyaporn Wongnate; Somchart Maenpuen; Ruchanok Tinikul; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2019-06-10       Impact factor: 5.157

9.  Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.

Authors:  Julia J Griese; Ramona Kositzki; Peer Schrapers; Rui M M Branca; Anders Nordström; Janne Lehtiö; Michael Haumann; Martin Högbom
Journal:  J Biol Chem       Date:  2015-08-31       Impact factor: 5.157

10.  Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.

Authors:  Bigna Wörsdörfer; Mahesh Lingaraju; Neela H Yennawar; Amie K Boal; Carsten Krebs; J Martin Bollinger; Maria-Eirini Pandelia
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-06       Impact factor: 11.205

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