Literature DB >> 23968132

Structures of the excited states of phospholamban and shifts in their populations upon phosphorylation.

Alfonso De Simone1, Martin Gustavsson, Rinaldo W Montalvao, Lei Shi, Gianluigi Veglia, Michele Vendruscolo.   

Abstract

Phospholamban is an integral membrane protein that controls the calcium balance in cardiac muscle cells. As the function and regulation of this protein require the active involvement of low populated states in equilibrium with the native state, it is of great interest to acquire structural information about them. In this work, we calculate the conformations and populations of the ground state and the three main excited states of phospholamban by incorporating nuclear magnetic resonance residual dipolar couplings as replica-averaged structural restraints in molecular dynamics simulations. We then provide a description of the manner in which phosphorylation at Ser16 modulates the activity of the protein by increasing the sizes of the populations of its excited states. These results demonstrate that the approach that we describe provides a detailed characterization of the different states of phospholamban that determine the function and regulation of this membrane protein. We anticipate that the knowledge of conformational ensembles enable the design of new dominant negative mutants of phospholamban by modulating the relative populations of its conformational substates.

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Year:  2013        PMID: 23968132      PMCID: PMC3844793          DOI: 10.1021/bi400517b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  74 in total

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2.  Probing ground and excited states of phospholamban in model and native lipid membranes by magic angle spinning NMR spectroscopy.

Authors:  Martin Gustavsson; Nathaniel J Traaseth; Gianluigi Veglia
Journal:  Biochim Biophys Acta       Date:  2011-08-03

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4.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

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Review 5.  NMR spectroscopy brings invisible protein states into focus.

Authors:  Andrew J Baldwin; Lewis E Kay
Journal:  Nat Chem Biol       Date:  2009-11       Impact factor: 15.040

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Authors:  P Permi; P R Rosevear; A Annila
Journal:  J Biomol NMR       Date:  2000-05       Impact factor: 2.835

7.  Effects of Ser16 phosphorylation on the allosteric transitions of phospholamban/Ca(2+)-ATPase complex.

Authors:  N J Traaseth; D D Thomas; G Veglia
Journal:  J Mol Biol       Date:  2006-03-07       Impact factor: 5.469

8.  Synthetic null-cysteine phospholamban analogue and the corresponding transmembrane domain inhibit the Ca-ATPase.

Authors:  C B Karim; C G Marquardt; J D Stamm; G Barany; D D Thomas
Journal:  Biochemistry       Date:  2000-09-05       Impact factor: 3.162

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Authors:  N Tjandra; A Bax
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Authors:  Guillaume Bouvignies; Pramodh Vallurupalli; D Flemming Hansen; Bruno E Correia; Oliver Lange; Alaji Bah; Robert M Vernon; Frederick W Dahlquist; David Baker; Lewis E Kay
Journal:  Nature       Date:  2011-08-21       Impact factor: 49.962

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  14 in total

1.  Atomic-level mechanisms for phospholamban regulation of the calcium pump.

Authors:  L Michel Espinoza-Fonseca; Joseph M Autry; G Lizbeth Ramírez-Salinas; David D Thomas
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

2.  Phospholamban phosphorylation, mutation, and structural dynamics: a biophysical approach to understanding and treating cardiomyopathy.

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Journal:  Biophys Rev       Date:  2015-01-21

3.  Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.

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Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

Review 4.  Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

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Journal:  Chem Rev       Date:  2018-01-10       Impact factor: 60.622

5.  Conformational recognition of an intrinsically disordered protein.

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6.  Structural basis for relief of phospholamban-mediated inhibition of the sarcoplasmic reticulum Ca2+-ATPase at saturating Ca2+ conditions.

Authors:  Eli Fernández-de Gortari; L Michel Espinoza-Fonseca
Journal:  J Biol Chem       Date:  2018-06-22       Impact factor: 5.157

Review 7.  New opportunities for tensor-free calculations of residual dipolar couplings for the study of protein dynamics.

Authors:  Rinaldo Montalvao; Carlo Camilloni; Alfonso De Simone; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2014-01-30       Impact factor: 2.835

8.  E2 superfamily of ubiquitin-conjugating enzymes: constitutively active or activated through phosphorylation in the catalytic cleft.

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9.  Structure of a low-population intermediate state in the release of an enzyme product.

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10.  Current and emerging opportunities for molecular simulations in structure-based drug design.

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Journal:  Phys Chem Chem Phys       Date:  2014-03-14       Impact factor: 3.676

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