Literature DB >> 23965997

Structure of the type IVa major pilin from the electrically conductive bacterial nanowires of Geobacter sulfurreducens.

Patrick N Reardon1, Karl T Mueller.   

Abstract

Several species of δ proteobacteria are capable of reducing insoluble metal oxides as well as other extracellular electron acceptors. These bacteria play a critical role in the cycling of minerals in subsurface environments, sediments, and groundwater. In some species of bacteria such as Geobacter sulfurreducens, the transport of electrons is proposed to be facilitated by filamentous fibers that are referred to as bacterial nanowires. These nanowires are polymeric assemblies of proteins belonging to the type IVa family of pilin proteins and are mainly comprised of one subunit protein, PilA. Here, we report the high resolution solution NMR structure of the PilA protein from G. sulfurreducens determined in detergent micelles. The protein is >85% α-helical and exhibits similar architecture to the N-terminal regions of other non-conductive type IVa pilins. The detergent micelle interacts with the first 21 amino acids of the protein, indicating that this region likely associates with the bacterial inner membrane prior to fiber formation. A model of the G. sulfurreducens pilus fiber is proposed based on docking of this structure into the fiber model of the type IVa pilin from Neisseria gonorrhoeae. This model provides insight into the organization of aromatic amino acids that are important for electrical conduction.

Entities:  

Keywords:  Bacterial Metabolism; Bioenergetics; Electron Transport; Membrane Proteins; NMR; Pili; Structural Biology

Mesh:

Substances:

Year:  2013        PMID: 23965997      PMCID: PMC3795228          DOI: 10.1074/jbc.M113.498527

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  39 in total

1.  Force-dependent polymorphism in type IV pili reveals hidden epitopes.

Authors:  Nicolas Biais; Dustin L Higashi; Jasna Brujic; Magdalene So; Michael P Sheetz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-03       Impact factor: 11.205

2.  Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Authors:  Bruce A Johnson
Journal:  Methods Mol Biol       Date:  2004

3.  Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells.

Authors:  Gemma Reguera; Kelly P Nevin; Julie S Nicoll; Sean F Covalla; Trevor L Woodard; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2006-08-25       Impact factor: 4.792

4.  Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese.

Authors:  D R Lovley; E J Phillips
Journal:  Appl Environ Microbiol       Date:  1988-06       Impact factor: 4.792

5.  Tunable metallic-like conductivity in microbial nanowire networks.

Authors:  Nikhil S Malvankar; Madeline Vargas; Kelly P Nevin; Ashley E Franks; Ching Leang; Byoung-Chan Kim; Kengo Inoue; Tünde Mester; Sean F Covalla; Jessica P Johnson; Vincent M Rotello; Mark T Tuominen; Derek R Lovley
Journal:  Nat Nanotechnol       Date:  2011-08-07       Impact factor: 39.213

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

8.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

9.  A new bioinformatics analysis tools framework at EMBL-EBI.

Authors:  Mickael Goujon; Hamish McWilliam; Weizhong Li; Franck Valentin; Silvano Squizzato; Juri Paern; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2010-05-03       Impact factor: 16.971

10.  Computational analysis of alpha-helical membrane protein structure: implications for the prediction of 3D structural models.

Authors:  Tina A Eyre; Linda Partridge; Janet M Thornton
Journal:  Protein Eng Des Sel       Date:  2004-09-23       Impact factor: 1.650

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  39 in total

1.  Dual Role of Humic Substances As Electron Donor and Shuttle for Dissimilatory Iron Reduction.

Authors:  Noah Stern; Jacqueline Mejia; Shaomei He; Yu Yang; Matthew Ginder-Vogel; Eric E Roden
Journal:  Environ Sci Technol       Date:  2018-04-24       Impact factor: 9.028

2.  Comparative Analysis of Type IV Pilin in Desulfuromonadales.

Authors:  Chuanjun Shu; Ke Xiao; Qin Yan; Xiao Sun
Journal:  Front Microbiol       Date:  2016-12-21       Impact factor: 5.640

3.  The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transfer.

Authors:  Dawn E Holmes; Yan Dang; David J F Walker; Derek R Lovley
Journal:  Microb Genom       Date:  2016-08-25

4.  Type IV pilins regulate their own expression via direct intramembrane interactions with the sensor kinase PilS.

Authors:  Sara L N Kilmury; Lori L Burrows
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

5.  Archaeal flagellin combines a bacterial type IV pilin domain with an Ig-like domain.

Authors:  Tatjana Braun; Matthijn R Vos; Nir Kalisman; Nicholas E Sherman; Reinhard Rachel; Reinhard Wirth; Gunnar F Schröder; Edward H Egelman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-30       Impact factor: 11.205

Review 6.  Extracellular electron transfer mechanisms between microorganisms and minerals.

Authors:  Liang Shi; Hailiang Dong; Gemma Reguera; Haluk Beyenal; Anhuai Lu; Juan Liu; Han-Qing Yu; James K Fredrickson
Journal:  Nat Rev Microbiol       Date:  2016-08-30       Impact factor: 60.633

7.  Significance of a Posttranslational Modification of the PilA Protein of Geobacter sulfurreducens for Surface Attachment, Biofilm Formation, and Growth on Insoluble Extracellular Electron Acceptors.

Authors:  Lubna V Richter; Ashley E Franks; Robert M Weis; Steven J Sandler
Journal:  J Bacteriol       Date:  2017-03-28       Impact factor: 3.490

Review 8.  Cryo-EM of bacterial pili and archaeal flagellar filaments.

Authors:  Edward H Egelman
Journal:  Curr Opin Struct Biol       Date:  2017-06-10       Impact factor: 6.809

9.  Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili.

Authors:  Xuyan Ru; Peng Zhang; David N Beratan
Journal:  J Phys Chem B       Date:  2019-06-10       Impact factor: 2.991

10.  A Geobacter sulfurreducens strain expressing pseudomonas aeruginosa type IV pili localizes OmcS on pili but is deficient in Fe(III) oxide reduction and current production.

Authors:  Xing Liu; Pier-Luc Tremblay; Nikhil S Malvankar; Kelly P Nevin; Derek R Lovley; Madeline Vargas
Journal:  Appl Environ Microbiol       Date:  2013-12-02       Impact factor: 4.792

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