Literature DB >> 23963952

Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes.

Surya V S R K Pulavarti1, Yunfen He, Erik A Feldmann, Alexander Eletsky, Thomas B Acton, Rong Xiao, John K Everett, Gaetano T Montelione, Michael A Kennedy, Thomas Szyperski.   

Abstract

High-quality NMR structures of the C-terminal domain comprising residues 484-537 of the 537-residue protein Bacterial chlorophyll subunit B (BchB) from Chlorobium tepidum and residues 9-61 of 61-residue Asr4154 from Nostoc sp. (strain PCC 7120) exhibit a mixed α/β fold comprised of three α-helices and a small β-sheet packed against second α-helix. These two proteins share 29% sequence similarity and their structures are globally quite similar. The structures of BchB(484-537) and Asr4154(9-61) are the first representative structures for the large protein family (Pfam) PF08369, a family of unknown function currently containing 610 members in bacteria and eukaryotes. Furthermore, BchB(484-537) complements the structural coverage of the dark-operating protochlorophyllide oxidoreductase.

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Year:  2013        PMID: 23963952      PMCID: PMC3982801          DOI: 10.1007/s10969-013-9159-5

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  35 in total

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Structure and mechanism of the RuvB Holliday junction branch migration motor.

Authors:  C D Putnam; S B Clancy; H Tsuruta; S Gonzalez; J G Wetmur; J A Tainer
Journal:  J Mol Biol       Date:  2001-08-10       Impact factor: 5.469

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Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

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Authors:  Hunter N B Moseley; Gurmukh Sahota; Gaetano T Montelione
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

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Journal:  J Mol Biol       Date:  1997-06-20       Impact factor: 5.469

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Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

7.  Structure of ADP-aluminium fluoride-stabilized protochlorophyllide oxidoreductase complex.

Authors:  Jürgen Moser; Christiane Lange; Joern Krausze; Johannes Rebelein; Wolf-Dieter Schubert; Markus W Ribbe; Dirk W Heinz; Dieter Jahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

8.  Dali: a network tool for protein structure comparison.

Authors:  L Holm; C Sander
Journal:  Trends Biochem Sci       Date:  1995-11       Impact factor: 13.807

9.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

10.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

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