Literature DB >> 16855303

Membrane's Eleven: heavy-atom derivatives of membrane-protein crystals.

J Preben Morth1, Thomas Lykke Møller Sørensen, Poul Nissen.   

Abstract

A database has been assembled of heavy-atom derivatives used in the structure determination of membrane proteins. The database can serve as a guide to the design of experiments in the search for heavy-atom derivatives of new membrane-protein crystals. The database pinpoints organomercurials, platinum(II) and trimethyllead compounds as being particularly useful. On the other hand, lanthanide and uranyl compounds are poorly represented, which may be a consequence of these compounds having aggressive effects in crystal-soaking procedures. Furthermore, the database highlights the variety of methods applied in the preparation of heavy-atom-derivatized crystals and in phasing. Cocrystallization can be further exploited. Phases have predominantly been obtained by SIRAS/MIRAS methods rather than SAD/MAD in recent structure determinations.

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Year:  2006        PMID: 16855303     DOI: 10.1107/S0907444906023547

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

1.  Phasing statistics for alpha helical membrane protein structures.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

2.  Crystallization and heavy-atom derivatization of StHsp14.0, a small heat-shock protein from Sulfolobus tokodaii.

Authors:  Takuro Hayashi; Tetsuya Abe; Kazuki Takeda; Nobuhiko Akiyama; Masafumi Yohda; Kunio Miki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-23

3.  Inscribing the perimeter of the PagP hydrocarbon ruler by site-specific chemical alkylation.

Authors:  M Adil Khan; Joel Moktar; Patrick J Mott; Mary Vu; Aaron H McKie; Thomas Pinter; Fraser Hof; Russell E Bishop
Journal:  Biochemistry       Date:  2010-10-26       Impact factor: 3.162

4.  Seleno-detergent MAD phasing of leukotriene C4 synthase in complex with dodecyl-β-D-selenomaltoside.

Authors:  Hiromichi Saino; Hideo Ago; Yoko Ukita; Masashi Miyano
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-29

5.  Experimental phasing for structure determination using membrane-protein crystals grown by the lipid cubic phase method.

Authors:  Dianfan Li; Valerie E Pye; Martin Caffrey
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

6.  Phasing and structure of bestrophin-1: a case study in the use of heavy-atom cluster compounds with multi-subunit transmembrane proteins.

Authors:  Veronica Kane Dickson
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

Review 7.  An overview of heavy-atom derivatization of protein crystals.

Authors:  Ashley C W Pike; Elspeth F Garman; Tobias Krojer; Frank von Delft; Elisabeth P Carpenter
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

8.  Fast iodide-SAD phasing for high-throughput membrane protein structure determination.

Authors:  Igor Melnikov; Vitaly Polovinkin; Kirill Kovalev; Ivan Gushchin; Mikhail Shevtsov; Vitaly Shevchenko; Alexey Mishin; Alexey Alekseev; Francisco Rodriguez-Valera; Valentin Borshchevskiy; Vadim Cherezov; Gordon A Leonard; Valentin Gordeliy; Alexander Popov
Journal:  Sci Adv       Date:  2017-05-12       Impact factor: 14.136

  8 in total

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