Literature DB >> 23963317

Effects of London dispersion correction in density functional theory on the structures of organic molecules in the gas phase.

Stefan Grimme1, Marc Steinmetz.   

Abstract

A benchmark set of 25 rotational constants measured in the gas phase for nine molecules (termed ROT25) was compiled from available experimental data. The medium-sized molecules with 18-35 atoms cover common (bio)organic structure motifs including hydrogen bonding and flexible side chains. They were each considered in a single conformation. The experimental B0 values were back-corrected to reference equilibrium rotational constants (Be) by computation of the vibrational corrections ΔBvib. Various density functional theory (DFT) methods and Hartree-Fock with and without dispersion corrections as well as MP2 type methods and semi-empirical quantum chemical approaches are investigated. The ROT25 benchmark tests their ability to describe covalent bond lengths, longer inter-atomic distances, and the relative orientation of functional groups (intramolecular non-covalent interactions). In general, dispersion corrections to DFT and HF increase Be values (shrink molecular size) significantly by about 0.5-1.5% thereby in general improving agreement with the reference data. Regarding DFT methods, the overall accuracy of the optimized structures roughly follows the 'Jacobs ladder' classification scheme, i.e., it decreases in the series double-hybrid > (meta)hybrid > (meta)GGA > LDA. With B2PLYP-D3, SCS-MP2, B3LYP-D3/NL, or PW6B95-D3 methods and extended QZVP (def2-TZVP) AO basis sets, Be values, accurate to about 0.3-0.6 (0.5-1)% on average, can be computed routinely. The accuracy of B2PLYP-D3/QZVP with a mean deviation of only 3 MHz and a standard deviation of 0.24% is exceptional and we recommend this method when highly accurate structures are required or for problematic conformer assignments. The correlation effects for three inter-atomic distance regimes (covalent, medium-range, long) and the performance of minimal basis set (semi-empirical) methods are discussed.

Entities:  

Year:  2013        PMID: 23963317     DOI: 10.1039/c3cp52293h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  20 in total

1.  Characterization of B-H agostic compounds involved in the dehydrogenation of amine-boranes by group 4 metallocenes.

Authors:  Jingwen Zhu; Emilie-Laure Zins; Mohammad Esmaïl Alikhani
Journal:  J Mol Model       Date:  2016-11-25       Impact factor: 1.810

Review 2.  Current Status of Quantum Chemical Studies of Cyclodextrin Host-Guest Complexes.

Authors:  Anna Helena Mazurek; Łukasz Szeleszczuk
Journal:  Molecules       Date:  2022-06-16       Impact factor: 4.927

3.  DNA-protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or deoxyribose sugar.

Authors:  Katie A Wilson; Jennifer L Kellie; Stacey D Wetmore
Journal:  Nucleic Acids Res       Date:  2014-04-17       Impact factor: 16.971

4.  CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Paola Cimino; Emanuele Penocchio; Cristina Puzzarini
Journal:  J Chem Theory Comput       Date:  2015-08-07       Impact factor: 6.006

5.  The thermochemistry of london dispersion-driven transition metal reactions: getting the 'right answer for the right reason'.

Authors:  Andreas Hansen; Christoph Bannwarth; Stefan Grimme; Predrag Petrović; Christophe Werlé; Jean-Pierre Djukic
Journal:  ChemistryOpen       Date:  2014-09-04       Impact factor: 2.911

Review 6.  Small Atomic Orbital Basis Set First-Principles Quantum Chemical Methods for Large Molecular and Periodic Systems: A Critical Analysis of Error Sources.

Authors:  Rebecca Sure; Jan Gerit Brandenburg; Stefan Grimme
Journal:  ChemistryOpen       Date:  2015-11-25       Impact factor: 2.911

7.  An extended N-H bond, driven by a conserved second-order interaction, orients the flavin N5 orbital in cholesterol oxidase.

Authors:  Emily Golden; Li-Juan Yu; Flora Meilleur; Matthew P Blakeley; Anthony P Duff; Amir Karton; Alice Vrielink
Journal:  Sci Rep       Date:  2017-01-18       Impact factor: 4.379

8.  Structural features of the carbon-sulfur chemical bond: a semi-experimental perspective.

Authors:  Emanuele Penocchio; Marco Mendolicchio; Nicola Tasinato; Vincenzo Barone
Journal:  Can J Chem       Date:  2016-07-28       Impact factor: 1.118

9.  Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-28       Impact factor: 3.676

10.  Substitution effect and effect of axle's flexibility at (pseudo-)rotaxanes.

Authors:  Friedrich Malberg; Jan Gerit Brandenburg; Werner Reckien; Oldamur Hollóczki; Stefan Grimme; Barbara Kirchner
Journal:  Beilstein J Org Chem       Date:  2014-06-05       Impact factor: 2.883

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