Literature DB >> 23955771

Site-specific characterization of the Asp- and Glu-ADP-ribosylated proteome.

Yajie Zhang1, Jianqi Wang, Ming Ding, Yonghao Yu.   

Abstract

Poly(ADP-ribosyl)ation is catalyzed by a family of enzymes known as PARPs. We describe a method to characterize the human aspartic acid- and glutamic acid-ADP-ribosylated proteome. We identified 1,048 ADP-ribosylation sites on 340 proteins involved in a wide array of nuclear functions; among these were many previously unknown PARP downstream targets whose ADP-ribosylation was sensitive to PARP inhibitor treatment. We also confirmed that iniparib had a negligible effect on PARP activity in intact cells.

Entities:  

Mesh：

Substances：

Year:  2013        PMID： 23955771     DOI： 10.1038/nmeth.2603

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  25 in total

1.  Re-evaluating PARP1 inhibitor in cancer.

Authors:  Alexei Tulin
Journal:  Nat Biotechnol       Date:  2011-12-08       Impact factor: 54.908

2.  Failure of iniparib to inhibit poly(ADP-Ribose) polymerase in vitro.

Authors:  Anand G Patel; Silvana B De Lorenzo; Karen S Flatten; Guy G Poirier; Scott H Kaufmann
Journal:  Clin Cancer Res       Date:  2012-01-30       Impact factor: 12.531

3.  A tissue-specific atlas of mouse protein phosphorylation and expression.

Authors:  Edward L Huttlin; Mark P Jedrychowski; Joshua E Elias; Tapasree Goswami; Ramin Rad; Sean A Beausoleil; Judit Villén; Wilhelm Haas; Mathew E Sowa; Steven P Gygi
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

4.  Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors.

Authors:  S J Hubbard; S F Campbell; J M Thornton
Journal:  J Mol Biol       Date:  1991-07-20       Impact factor: 5.469

Review 5.  PARP inhibition: PARP1 and beyond.

Authors:  Michèle Rouleau; Anand Patel; Michael J Hendzel; Scott H Kaufmann; Guy G Poirier
Journal:  Nat Rev Cancer       Date:  2010-03-04       Impact factor: 60.716

6.  Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling.

Authors:  Yonghao Yu; Sang-Oh Yoon; George Poulogiannis; Qian Yang; Xiaoju Max Ma; Judit Villén; Neil Kubica; Gregory R Hoffman; Lewis C Cantley; Steven P Gygi; John Blenis
Journal:  Science       Date:  2011-06-10       Impact factor: 47.728

7.  Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry.

Authors:  John D Chapman; Jean-Philippe Gagné; Guy G Poirier; David R Goodlett
Journal:  J Proteome Res       Date:  2013-03-18       Impact factor: 4.466

8.  RNF146 is a poly(ADP-ribose)-directed E3 ligase that regulates axin degradation and Wnt signalling.

Authors:  Yue Zhang; Shanming Liu; Craig Mickanin; Yan Feng; Olga Charlat; Gregory A Michaud; Markus Schirle; Xiaoying Shi; Marc Hild; Andreas Bauer; Vic E Myer; Peter M Finan; Jeffery A Porter; Shih-Min A Huang; Feng Cong
Journal:  Nat Cell Biol       Date:  2011-04-10       Impact factor: 28.824

9.  Amino acid-specific ADP-ribosylation.

Authors:  J Moss; D A Yost; S J Stanley
Journal:  J Biol Chem       Date:  1983-05-25       Impact factor: 5.157

10.  A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

Authors:  Jesper V Olsen; Jae C Schwartz; Jens Griep-Raming; Michael L Nielsen; Eugen Damoc; Eduard Denisov; Oliver Lange; Philip Remes; Dennis Taylor; Maurizio Splendore; Eloy R Wouters; Michael Senko; Alexander Makarov; Matthias Mann; Stevan Horning
Journal:  Mol Cell Proteomics       Date:  2009-10-14       Impact factor: 5.911
View more
  151 in total

1.  Comprehensive ADP-ribosylome analysis identifies tyrosine as an ADP-ribose acceptor site.

Authors:  Deena M Leslie Pedrioli; Mario Leutert; Vera Bilan; Kathrin Nowak; Kapila Gunasekera; Elena Ferrari; Ralph Imhof; Lars Malmström; Michael O Hottiger
Journal:  EMBO Rep       Date:  2018-06-28       Impact factor: 8.807

Review 2.  ADP-ribosyltransferases and poly ADP-ribosylation.

Authors:  Chao Liu; Xiaochun Yu
Journal:  Curr Protein Pept Sci       Date:  2015       Impact factor: 3.272

3.  Poly(ADP-ribose) Polymerase 1 Modulates Interaction of the Nucleotide Excision Repair Factor XPC-RAD23B with DNA via Poly(ADP-ribosyl)ation.

Authors:  Ekaterina A Maltseva; Nadejda I Rechkunova; Maria V Sukhanova; Olga I Lavrik
Journal:  J Biol Chem       Date:  2015-07-13       Impact factor: 5.157

4.  Crescendo: A Protein Sequence Database Search Engine for Tandem Mass Spectra.

Authors:  Jianqi Wang; Yajie Zhang; Yonghao Yu
Journal:  J Am Soc Mass Spectrom       Date:  2015-04-21       Impact factor: 3.109

5.  Poly(ADP-ribosyl)ation is recognized by ECT2 during mitosis.

Authors:  Mo Li; Chunjing Bian; Xiaochun Yu
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

Review 6.  Quantitative proteomic analysis of histone modifications.

Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

7.  ELTA: Enzymatic Labeling of Terminal ADP-Ribose.

Authors:  Yoshinari Ando; Elad Elkayam; Robert Lyle McPherson; Morgan Dasovich; Shang-Jung Cheng; Jim Voorneveld; Dmitri V Filippov; Shao-En Ong; Leemor Joshua-Tor; Anthony K L Leung
Journal:  Mol Cell       Date:  2019-01-31       Impact factor: 17.970

8.  Plants get on PAR with poly(ADP-ribosyl)ation.

Authors:  Frank Lh Menke
Journal:  EMBO Rep       Date:  2016-11-02       Impact factor: 8.807

9.  Ubiquitin Modification by the E3 Ligase/ADP-Ribosyltransferase Dtx3L/Parp9.

Authors:  Chun-Song Yang; Kasey Jividen; Adam Spencer; Natalia Dworak; Li Ni; Luke T Oostdyk; Mandovi Chatterjee; Beata Kuśmider; Brian Reon; Mahmut Parlak; Vera Gorbunova; Tarek Abbas; Erin Jeffery; Nicholas E Sherman; Bryce M Paschal
Journal:  Mol Cell       Date:  2017-05-18       Impact factor: 17.970

10.  Analyzing structure-function relationships of artificial and cancer-associated PARP1 variants by reconstituting TALEN-generated HeLa PARP1 knock-out cells.

Authors:  Lisa Rank; Sebastian Veith; Eva C Gwosch; Janine Demgenski; Magdalena Ganz; Marjolijn C Jongmans; Christopher Vogel; Arthur Fischbach; Stefanie Buerger; Jan M F Fischer; Tabea Zubel; Anna Stier; Christina Renner; Michael Schmalz; Sascha Beneke; Marcus Groettrup; Roland P Kuiper; Alexander Bürkle; Elisa Ferrando-May; Aswin Mangerich
Journal:  Nucleic Acids Res       Date:  2016-09-29       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.