Literature DB >> 23953107

Single-molecule approaches embrace molecular cohorts.

Taekjip Ha1.   

Abstract

Enormous mechanistic insight has been gained by studying the behavior of single molecules. The same approaches used to study proteins in isolation are now being leveraged to examine the changes in functional behavior that emerge when single molecules have company.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID： 23953107      PMCID： PMC3777535          DOI： 10.1016/j.cell.2013.07.012

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


  17 in total

1.  The complex folding network of single calmodulin molecules.

Authors:  Johannes Stigler; Fabian Ziegler; Anja Gieseke; J Christof M Gebhardt; Matthias Rief
Journal:  Science       Date:  2011-10-28       Impact factor: 47.728

2.  The importance of sequence diversity in the aggregation and evolution of proteins.

Authors:  Caroline F Wright; Sarah A Teichmann; Jane Clarke; Christopher M Dobson
Journal:  Nature       Date:  2005-12-08       Impact factor: 49.962

Review 3.  Non-hexameric DNA helicases and translocases: mechanisms and regulation.

Authors:  Timothy M Lohman; Eric J Tomko; Colin G Wu
Journal:  Nat Rev Mol Cell Biol       Date:  2008-05       Impact factor: 94.444

4.  Ultrahigh-resolution optical trap with single-fluorophore sensitivity.

Authors:  Matthew J Comstock; Taekjip Ha; Yann R Chemla
Journal:  Nat Methods       Date:  2011-02-20       Impact factor: 28.547

5.  SSB functions as a sliding platform that migrates on DNA via reptation.

Authors:  Ruobo Zhou; Alexander G Kozlov; Rahul Roy; Jichuan Zhang; Sergey Korolev; Timothy M Lohman; Taekjip Ha
Journal:  Cell       Date:  2011-07-22       Impact factor: 41.582

6.  Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange.

Authors:  Joseph J Loparo; Arkadiusz W Kulczyk; Charles C Richardson; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-18       Impact factor: 11.205

7.  Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA.

Authors:  John S Graham; Reid C Johnson; John F Marko
Journal:  Nucleic Acids Res       Date:  2010-11-21       Impact factor: 16.971

8.  Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins.

Authors:  Madeleine B Borgia; Alessandro Borgia; Robert B Best; Annette Steward; Daniel Nettels; Bengt Wunderlich; Benjamin Schuler; Jane Clarke
Journal:  Nature       Date:  2011-05-29       Impact factor: 49.962

9.  Single-molecule imaging of DNA pairing by RecA reveals a three-dimensional homology search.

Authors:  Anthony L Forget; Stephen C Kowalczykowski
Journal:  Nature       Date:  2012-02-08       Impact factor: 49.962

10.  Direct imaging of single UvrD helicase dynamics on long single-stranded DNA.

Authors:  Kyung Suk Lee; Hamza Balci; Haifeng Jia; Timothy M Lohman; Taekjip Ha
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919
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  20 in total

1.  Force-Dependent Facilitated Dissociation Can Generate Protein-DNA Catch Bonds.

Authors:  Katelyn Dahlke; Jing Zhao; Charles E Sing; Edward J Banigan
Journal:  Biophys J       Date:  2019-08-02       Impact factor: 4.033

2.  Single-Stranded DNA Curtains for Studying Homologous Recombination.

Authors:  C J Ma; J B Steinfeld; E C Greene
Journal:  Methods Enzymol       Date:  2016-10-22       Impact factor: 1.600

3.  Continuous throughput and long-term observation of single-molecule FRET without immobilization.

Authors:  Swati Tyagi; Virginia VanDelinder; Niccolò Banterle; Gustavo Fuertes; Sigrid Milles; Morgane Agez; Edward A Lemke
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547

4.  Polymerase exchange on single DNA molecules reveals processivity clamp control of translesion synthesis.

Authors:  James E Kath; Slobodan Jergic; Justin M H Heltzel; Deena T Jacob; Nicholas E Dixon; Mark D Sutton; Graham C Walker; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-13       Impact factor: 11.205

5.  Multiparametric high-resolution imaging of native proteins by force-distance curve-based AFM.

Authors:  Moritz Pfreundschuh; David Martinez-Martin; Estefania Mulvihill; Susanne Wegmann; Daniel J Muller
Journal:  Nat Protoc       Date:  2014-04-17       Impact factor: 13.491

6.  Stochastic dynamics of genetic broadcasting networks.

Authors:  Davit A Potoyan; Peter G Wolynes
Journal:  Phys Rev E       Date:  2017-11-03       Impact factor: 2.529

Review 7.  A change of view: homologous recombination at single-molecule resolution.

Authors:  Kyle Kaniecki; Luisina De Tullio; Eric C Greene
Journal:  Nat Rev Genet       Date:  2017-12-11       Impact factor: 53.242

8.  Protein dynamics of human RPA and RAD51 on ssDNA during assembly and disassembly of the RAD51 filament.

Authors:  Chu Jian Ma; Bryan Gibb; YoungHo Kwon; Patrick Sung; Eric C Greene
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

Review 9.  How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation.

Authors:  Aykut Erbaş; John F Marko
Journal:  Curr Opin Chem Biol       Date:  2019-10-02       Impact factor: 8.822

10.  Stochastic ratchet mechanisms for replacement of proteins bound to DNA.

Authors:  S Cocco; J F Marko; R Monasson
Journal:  Phys Rev Lett       Date:  2014-06-11       Impact factor: 9.161
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