Literature DB >> 23950497

Dynamically reshaping signaling networks to program cell fate via genetic controllers.

Kate E Galloway1, Elisa Franco, Christina D Smolke.   

Abstract

Engineering of cell fate through synthetic gene circuits requires methods to precisely implement control around native decision-making pathways and offers the potential to direct cell processes. We demonstrate a class of genetic control systems, molecular network diverters, that interface with a native signaling pathway to route cells to divergent fates in response to environmental signals without modification of native genetic material. A method for identifying control points within natural networks is described that enables the construction of synthetic control systems that activate or attenuate native pathways to direct cell fate. We integrate opposing genetic programs by developing network architectures for reduced antagonism and demonstrate rational tuning of performance. Extension of these control strategies to mammalian systems should facilitate the engineering of complex cellular signaling systems.

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Year:  2013        PMID: 23950497      PMCID: PMC4069606          DOI: 10.1126/science.1235005

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  51 in total

1.  Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms.

Authors:  Sang-Hyun Park; Ali Zarrinpar; Wendell A Lim
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

2.  Synthetic ecosystems based on airborne inter- and intrakingdom communication.

Authors:  Wilfried Weber; Marie Daoud-El Baba; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

3.  Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics.

Authors:  Caleb J Bashor; Noah C Helman; Shude Yan; Wendell A Lim
Journal:  Science       Date:  2008-03-14       Impact factor: 47.728

4.  Positive-feedback loops as a flexible biological module.

Authors:  Nicholas T Ingolia; Andrew W Murray
Journal:  Curr Biol       Date:  2007-03-29       Impact factor: 10.834

5.  A modular and extensible RNA-based gene-regulatory platform for engineering cellular function.

Authors:  Maung Nyan Win; Christina D Smolke
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-20       Impact factor: 11.205

6.  Biochemical and biological characterization of a neuroendocrine-associated phosphatase.

Authors:  Jiz-Yuh Wang; Chia-Hua Lin; Chi-Hwa Yang; Tse-Hua Tan; Yi-Rong Chen
Journal:  J Neurochem       Date:  2006-07       Impact factor: 5.372

7.  Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Authors:  Silvia D M Santos; Peter J Verveer; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2007-02-18       Impact factor: 28.824

8.  Quantitative effect of scaffold abundance on signal propagation.

Authors:  Stephen A Chapman; Anand R Asthagiri
Journal:  Mol Syst Biol       Date:  2009-10-13       Impact factor: 11.429

9.  A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells.

Authors:  Tara L Deans; Charles R Cantor; James J Collins
Journal:  Cell       Date:  2007-07-27       Impact factor: 41.582

10.  Design principles for riboswitch function.

Authors:  Chase L Beisel; Christina D Smolke
Journal:  PLoS Comput Biol       Date:  2009-04-17       Impact factor: 4.475

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  31 in total

1.  Synthetic biology: Engineering off the beaten pathway.

Authors:  Tal Nawy
Journal:  Nat Methods       Date:  2013-10       Impact factor: 28.547

2.  RNA-protein interaction detection in living cells.

Authors:  Muthukumar Ramanathan; Karim Majzoub; Deepti S Rao; Poornima H Neela; Brian J Zarnegar; Smarajit Mondal; Julien G Roth; Hui Gai; Joanna R Kovalski; Zurab Siprashvili; Theo D Palmer; Jan E Carette; Paul A Khavari
Journal:  Nat Methods       Date:  2018-02-05       Impact factor: 28.547

3.  Protease-based synthetic sensing and signal amplification.

Authors:  Viktor Stein; Kirill Alexandrov
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-29       Impact factor: 11.205

4.  Rapidly rendering cells phagocytic through a cell surface display technique and concurrent Rac activation.

Authors:  Hiroki Onuma; Toru Komatsu; Makoto Arita; Kenjiro Hanaoka; Tasuku Ueno; Takuya Terai; Tetsuo Nagano; Takanari Inoue
Journal:  Sci Signal       Date:  2014-07-15       Impact factor: 8.192

Review 5.  A versatile framework for microbial engineering using synthetic non-coding RNAs.

Authors:  Lei S Qi; Adam P Arkin
Journal:  Nat Rev Microbiol       Date:  2014-05       Impact factor: 60.633

6.  Evolution-guided engineering of small-molecule biosensors.

Authors:  Tim Snoek; Evan K Chaberski; Francesca Ambri; Stefan Kol; Sara P Bjørn; Bo Pang; Jesus F Barajas; Ditte H Welner; Michael K Jensen; Jay D Keasling
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

7.  Directing cellular information flow via CRISPR signal conductors.

Authors:  Yuchen Liu; Yonghao Zhan; Zhicong Chen; Anbang He; Jianfa Li; Hanwei Wu; Li Liu; Chengle Zhuang; Junhao Lin; Xiaoqiang Guo; Qiaoxia Zhang; Weiren Huang; Zhiming Cai
Journal:  Nat Methods       Date:  2016-09-05       Impact factor: 28.547

Review 8.  Synthetic biology in mammalian cells: next generation research tools and therapeutics.

Authors:  Florian Lienert; Jason J Lohmueller; Abhishek Garg; Pamela A Silver
Journal:  Nat Rev Mol Cell Biol       Date:  2014-01-17       Impact factor: 94.444

9.  Bacteriophage-based synthetic biology for the study of infectious diseases.

Authors:  Robert J Citorik; Mark Mimee; Timothy K Lu
Journal:  Curr Opin Microbiol       Date:  2014-07-03       Impact factor: 7.934

10.  CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo.

Authors:  Adrián López Martín; Mohamed Mounir; Irmtraud M Meyer
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

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