Literature DB >> 24997401

Bacteriophage-based synthetic biology for the study of infectious diseases.

Robert J Citorik1,2, Mark Mimee1,2, Timothy K Lu1,2,3,4.   

Abstract

Since their discovery, bacteriophages have contributed enormously to our understanding of molecular biology as model systems. Furthermore, bacteriophages have provided many tools that have advanced the fields of genetic engineering and synthetic biology. Here, we discuss bacteriophage-based technologies and their application to the study of infectious diseases. New strategies for engineering genomes have the potential to accelerate the design of novel phages as therapies, diagnostics, and tools. Though almost a century has elapsed since their discovery, bacteriophages continue to have a major impact on modern biological sciences, especially with the growth of multidrug-resistant bacteria and interest in the microbiome.
Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2014        PMID: 24997401      PMCID: PMC4125527          DOI: 10.1016/j.mib.2014.05.022

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  122 in total

Review 1.  Pathogen detection using engineered bacteriophages.

Authors:  Abby E Smartt; Tingting Xu; Patricia Jegier; Jessica J Carswell; Samuel A Blount; Gary S Sayler; Steven Ripp
Journal:  Anal Bioanal Chem       Date:  2011-11-20       Impact factor: 4.142

Review 2.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

Review 3.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

4.  Polyvalent inhibitors of anthrax toxin that target host receptors.

Authors:  Saleem Basha; Prakash Rai; Vincent Poon; Arundhati Saraph; Kunal Gujraty; Mandy Y Go; Skanda Sadacharan; Mia Frost; Jeremy Mogridge; Ravi S Kane
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-28       Impact factor: 11.205

5.  A rapid and simple method for inactivating chromosomal genes in Yersinia.

Authors:  Anne Derbise; Biliana Lesic; Denis Dacheux; Jean Marc Ghigo; Elisabeth Carniel
Journal:  FEMS Immunol Med Microbiol       Date:  2003-09-22

6.  A fully decompressed synthetic bacteriophage øX174 genome assembled and archived in yeast.

Authors:  Paul R Jaschke; Erica K Lieberman; Jon Rodriguez; Adrian Sierra; Drew Endy
Journal:  Virology       Date:  2012-10-15       Impact factor: 3.616

7.  Turning a new phage.

Authors:  Lauren Gravitz
Journal:  Nat Med       Date:  2012-09       Impact factor: 53.440

8.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

9.  Synthetic in vitro transcriptional oscillators.

Authors:  Jongmin Kim; Erik Winfree
Journal:  Mol Syst Biol       Date:  2011-02-01       Impact factor: 11.429

10.  RNA-guided editing of bacterial genomes using CRISPR-Cas systems.

Authors:  Wenyan Jiang; David Bikard; David Cox; Feng Zhang; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

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  23 in total

1.  Detection of viruses by counting single fluorescent genetically biotinylated reporter immunophage using a lateral flow assay.

Authors:  Jinsu Kim; Meena Adhikari; Sagar Dhamane; Anna E V Hagström; Katerina Kourentzi; Ulrich Strych; Richard C Willson; Jacinta C Conrad
Journal:  ACS Appl Mater Interfaces       Date:  2015-01-23       Impact factor: 9.229

2.  Bacteriophage Therapy Testing Against Shigella flexneri in a Novel Human Intestinal Organoid-Derived Infection Model.

Authors:  Alejandro Llanos-Chea; Robert J Citorik; Kourtney P Nickerson; Laura Ingano; Gloria Serena; Stefania Senger; Timothy K Lu; Alessio Fasano; Christina S Faherty
Journal:  J Pediatr Gastroenterol Nutr       Date:  2019-04       Impact factor: 2.839

3.  Orientational binding modes of reporters in a viral-nanoparticle lateral flow assay.

Authors:  Jinsu Kim; Ryan Poling-Skutvik; João R C Trabuco; Katerina Kourentzi; Richard C Willson; Jacinta C Conrad
Journal:  Analyst       Date:  2016-12-19       Impact factor: 4.616

4.  A century of phage research: bacteriophages and the shaping of modern biology.

Authors:  Eric C Keen
Journal:  Bioessays       Date:  2015-01       Impact factor: 4.345

Review 5.  Biological challenges of phage therapy and proposed solutions: a literature review.

Authors:  Katherine M Caflisch; Gina A Suh; Robin Patel
Journal:  Expert Rev Anti Infect Ther       Date:  2019-12-02       Impact factor: 5.091

Review 6.  Mammalian synthetic biology: emerging medical applications.

Authors:  Zoltán Kis; Hugo Sant'Ana Pereira; Takayuki Homma; Ryan M Pedrigi; Rob Krams
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

Review 7.  A century of the phage: past, present and future.

Authors:  George P C Salmond; Peter C Fineran
Journal:  Nat Rev Microbiol       Date:  2015-11-09       Impact factor: 60.633

8.  Bacteriophage ϕMAM1, a viunalikevirus, is a broad-host-range, high-efficiency generalized transducer that infects environmental and clinical isolates of the enterobacterial genera Serratia and Kluyvera.

Authors:  Miguel A Matilla; George P C Salmond
Journal:  Appl Environ Microbiol       Date:  2014-08-08       Impact factor: 4.792

9.  The Expression of a Novel Mitochondrially-Encoded Gene in Gonadic Precursors May Drive Paternal Inheritance of Mitochondria.

Authors:  Liliana Milani; Fabrizio Ghiselli; Andrea Pecci; Maria Gabriella Maurizii; Marco Passamonti
Journal:  PLoS One       Date:  2015-09-04       Impact factor: 3.240

10.  A Jump-from-Cavity Pyrophosphate Ion Release Assisted by a Key Lysine Residue in T7 RNA Polymerase Transcription Elongation.

Authors:  Lin-Tai Da; Chao E; Baogen Duan; Chuanbiao Zhang; Xin Zhou; Jin Yu
Journal:  PLoS Comput Biol       Date:  2015-11-24       Impact factor: 4.475

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