Literature DB >> 23944768

Evaluation of a dried blood and plasma collection device, SampleTanker(®), for HIV type 1 drug resistance genotyping in patients receiving antiretroviral therapy.

Karidia Diallo1, Erica Lehotzky, Jing Zhang, Zhiyong Zhou, Ivette Lorenzana de Rivera, Wendy E Murillo, John Nkengasong, Jennifer Sabatier, Guoqing Zhang, Chunfu Yang.   

Abstract

Whatman 903 filter paper is the only filter paper that has been used for HIV drug resistance (HIVDR) genotyping in resource-limited settings. In this study, we evaluated another dried blood specimen collection device, termed SampleTanker(®) (ST), for HIVDR genotyping. Blood specimens from 123 antiretroviral therapy (ART)-experienced patients were used to prepare ST whole blood and ST plasma specimens; they were then stored at ambient temperature for 2 or 4 weeks. The remaining plasma specimens were stored at -80°C and used as frozen plasma controls. Frozen plasma viral load (VL) was determined using the Roche Amplicor HIV-1 Monitor test, v.1.5 and 50 specimens with VL ≥3.00 log10 copies/ml were genotyped using the broadly sensitive genotyping assay. The medium VL for the 50 frozen plasma specimens with VL ≥3.00 log10 was 3.58 log10 copies/ml (IQR: 3.32-4.11) and 96.0% (48/50) of them were genotyped. Comparing to frozen plasma specimens, significantly lower genotyping rates were obtained from ST whole blood (48.98% and 42.85%) and ST plasma specimens (36.0% and 36.0%) stored at ambient temperature for 2 and 4 weeks, respectively (p<0.001). Nucleotide sequence identity and resistance profile analyses between the matched frozen plasma and ST whole blood or ST plasma specimens revealed high nucleotide sequence identities and concordant resistance profiles (98.1% and 99.0%, and 96.6% and 98.9%, respectively). Our results indicate that with the current design, the ST may not be the ideal dried blood specimen collection device for HIVDR monitoring for ART patients in resource-limited settings.

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Year:  2013        PMID: 23944768     DOI: 10.1089/aid.2013.0127

Source DB:  PubMed          Journal:  AIDS Res Hum Retroviruses        ISSN: 0889-2229            Impact factor:   2.205


  5 in total

1.  Simultaneous Detection of Major Drug Resistance Mutations of HIV-1 Subtype B Viruses from Dried Blood Spot Specimens by Multiplex Allele-Specific Assay.

Authors:  Guoqing Zhang; Fangping Cai; Ivette Lorenzana de Rivera; Zhiyong Zhou; Jing Zhang; John Nkengasong; Feng Gao; Chunfu Yang
Journal:  J Clin Microbiol       Date:  2015-11-11       Impact factor: 5.948

2.  Comparison of Matrix-Based and Filter Paper-Based Systems for Transport of Plasma for HIV-1 RNA Quantification and Amplicon Preparation for Genotyping.

Authors:  Molly Levine; Ingrid Beck; Sheila Styrchak; Gregory Pepper; Lisa Frenkel
Journal:  J Clin Microbiol       Date:  2016-04-13       Impact factor: 5.948

3.  HIV diversity and drug resistance from plasma and non-plasma analytes in a large treatment programme in western Kenya.

Authors:  Rami Kantor; Allison DeLong; Maya Balamane; Leeann Schreier; Robert M Lloyd; Wilfred Injera; Lydia Kamle; Fidelis Mambo; Sarah Muyonga; David Katzenstein; Joseph Hogan; Nathan Buziba; Lameck Diero
Journal:  J Int AIDS Soc       Date:  2014-11-18       Impact factor: 5.396

4.  Performance characteristics of finger-stick dried blood spots (DBS) on the determination of human immunodeficiency virus (HIV) treatment failure in a pediatric population in Mozambique.

Authors:  Joy Chang; Amina de Sousa; Jennifer Sabatier; Mariamo Assane; Guoqing Zhang; Dulce Bila; Paula Vaz; Charity Alfredo; Loide Cossa; Nilesh Bhatt; Emilia H Koumans; Chunfu Yang; Emilia Rivadeneira; Ilesh Jani; James C Houston
Journal:  PLoS One       Date:  2017-07-13       Impact factor: 3.240

Review 5.  Overview of the Analytes Applied in Genotypic HIV Drug Resistance Testing.

Authors:  Hezhao Ji; Paul Sandstrom
Journal:  Pathogens       Date:  2022-06-29
  5 in total

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