Literature DB >> 26560533

Simultaneous Detection of Major Drug Resistance Mutations of HIV-1 Subtype B Viruses from Dried Blood Spot Specimens by Multiplex Allele-Specific Assay.

Guoqing Zhang1, Fangping Cai2, Ivette Lorenzana de Rivera3, Zhiyong Zhou1, Jing Zhang1, John Nkengasong1, Feng Gao4, Chunfu Yang5.   

Abstract

A multiplex allele-specific (MAS) assay has been developed for the detection of HIV-1 subtype C drug resistance mutations (DRMs). We have optimized the MAS assay to determine subtype B DRMs in dried blood spots (DBS) collected from patients on antiretroviral therapy. The new assay accurately detected DRMs, including low-abundance mutations that were often missed by Sanger sequencing.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID： 26560533      PMCID： PMC4702749          DOI： 10.1128/JCM.02833-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  8 in total

1.  Evaluation of a dried blood and plasma collection device, SampleTanker(®), for HIV type 1 drug resistance genotyping in patients receiving antiretroviral therapy.

Authors:  Karidia Diallo; Erica Lehotzky; Jing Zhang; Zhiyong Zhou; Ivette Lorenzana de Rivera; Wendy E Murillo; John Nkengasong; Jennifer Sabatier; Guoqing Zhang; Chunfu Yang
Journal:  AIDS Res Hum Retroviruses       Date:  2013-08-14       Impact factor: 2.205

2.  Simultaneous detection of major drug resistance mutations in the protease and reverse transcriptase genes for HIV-1 subtype C by use of a multiplex allele-specific assay.

Authors:  Guoqing Zhang; Fangping Cai; Zhiyong Zhou; Joshua DeVos; Nick Wagar; Karidia Diallo; Isaac Zulu; Nellie Wadonda-Kabondo; Jeffrey S A Stringer; Paul J Weidle; Clement B Ndongmo; Izukanji Sikazwe; Abdoulaye Sarr; Matthew Kagoli; John Nkengasong; Feng Gao; Chunfu Yang
Journal:  J Clin Microbiol       Date:  2013-08-28       Impact factor: 5.948

3.  Development and application of a broadly sensitive dried-blood-spot-based genotyping assay for global surveillance of HIV-1 drug resistance.

Authors:  Chunfu Yang; Amanda McNulty; Karidia Diallo; Jing Zhang; Boghuma Titanji; Sidibe Kassim; Nellie Wadonda-Kabondo; John Aberle-Grasse; Tabitha Kibuka; Peter M Ndumbe; Shanmugam Vedapuri; Zhiyong Zhou; Benson Chilima; John N Nkengasong
Journal:  J Clin Microbiol       Date:  2010-07-21       Impact factor: 5.948

Review 4.  Effects of political conflict-induced treatment interruptions on HIV drug resistance.

Authors:  Marita Mann; Mark N Lurie; Sylvester Kimaiyo; Rami Kantor
Journal:  AIDS Rev       Date:  2013 Jan-Mar       Impact factor: 2.500

5.  A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A.

Authors:  Yajun Song; Philippe Roumagnac; François-Xavier Weill; John Wain; Christiane Dolecek; Camila J Mazzoni; Kathryn E Holt; Mark Achtman
Journal:  J Antimicrob Chemother       Date:  2010-05-28       Impact factor: 5.790

6.  Optimization of a low cost and broadly sensitive genotyping assay for HIV-1 drug resistance surveillance and monitoring in resource-limited settings.

Authors:  Zhiyong Zhou; Nick Wagar; Joshua R DeVos; Erin Rottinghaus; Karidia Diallo; Duc B Nguyen; Orji Bassey; Richard Ugbena; Nellie Wadonda-Kabondo; Michelle S McConnell; Isaac Zulu; Benson Chilima; John Nkengasong; Chunfu Yang
Journal:  PLoS One       Date:  2011-11-23       Impact factor: 3.240

Review 7.  Reviewing the history of HIV-1: spread of subtype B in the Americas.

Authors:  Dennis Maletich Junqueira; Rúbia Marília de Medeiros; Maria Cristina Cotta Matte; Leonardo Augusto Luvison Araújo; Jose Artur Bogo Chies; Patricia Ashton-Prolla; Sabrina Esteves de Matos Almeida
Journal:  PLoS One       Date:  2011-11-23       Impact factor: 3.240

Review 8.  Applications of Luminex xMAP technology for rapid, high-throughput multiplexed nucleic acid detection.

Authors:  Sherry A Dunbar
Journal:  Clin Chim Acta       Date:  2005-08-15       Impact factor: 3.786
  8 in total
  9 in total

1.  Multiplex Solid-Phase Melt Curve Analysis for the Point-of-Care Detection of HIV-1 Drug Resistance.

Authors:  Dana S Clutter; Gelareh Mazarei; Ruma Sinha; Justen Manasa; Janin Nouhin; Ellen LaPrade; Sara Bolouki; Philip L Tzou; Jessica Hannita-Hui; Malaya K Sahoo; Peter Kuimelis; Robert G Kuimelis; Benjamin A Pinsky; Gary K Schoolnik; Arjang Hassibi; Robert W Shafer
Journal:  J Mol Diagn       Date:  2019-04-23       Impact factor: 5.568

Review 2.  Current Status of Point-of-Care Testing for Human Immunodeficiency Virus Drug Resistance.

Authors:  Horacio A Duarte; Nuttada Panpradist; Ingrid A Beck; Barry Lutz; James Lai; Ruth M Kanthula; Rami Kantor; Anubhav Tripathi; Shanmugam Saravanan; Iain J MacLeod; Michael H Chung; Guoqing Zhang; Chunfu Yang; Lisa M Frenkel
Journal:  J Infect Dis       Date:  2017-12-01       Impact factor: 5.226

Review 3.  Diagnosis of Human Immunodeficiency Virus Infection.

Authors:  Bharat S Parekh; Chin-Yih Ou; Peter N Fonjungo; Mireille B Kalou; Erin Rottinghaus; Adrian Puren; Heather Alexander; Mackenzie Hurlston Cox; John N Nkengasong
Journal:  Clin Microbiol Rev       Date:  2018-11-28       Impact factor: 26.132

4.  Detection of minority drug resistant mutations in Malawian HIV-1 subtype C-positive patients initiating and on first-line antiretroviral therapy.

Authors:  Zhiyong Zhou; Kevin Tang; Guoqing Zhang; Nellie Wadonda-Kabondo; Kundai Moyo; Lori A Rowe; Joshua R DeVos; Nick Wagar; Du-Ping Zheng; Hongxiong Guo; John Nkengasong; Mike Frace; Scott Sammons; Chunfu Yang
Journal:  Afr J Lab Med       Date:  2018-05-30

Review 5.  What Will Happen to Biomedical Research in Low-and-Middle Income Countries in the PostCOVID-19 World?

Authors:  Gustavo Fontecha; Ana L Sánchez
Journal:  Curr Trop Med Rep       Date:  2021-01-04

6.  Point-of-Care Tests for HIV Drug Resistance Monitoring: Advances and Potentials.

Authors:  Rayeil J Chua; Rupert Capiña; Hezhao Ji
Journal:  Pathogens       Date:  2022-06-25

Review 7.  HIV-1 drug resistance and resistance testing.

Authors:  Dana S Clutter; Michael R Jordan; Silvia Bertagnolio; Robert W Shafer
Journal:  Infect Genet Evol       Date:  2016-08-29       Impact factor: 3.342

8.  HIV-1 Recent Infection Testing Algorithm With Antiretroviral Drug Detection to Improve Accuracy of Incidence Estimates.

Authors:  Andrew C Voetsch; Yen T Duong; Paul Stupp; Suzue Saito; Stephen McCracken; Trudy Dobbs; Frieda S Winterhalter; Daniel B Williams; Assegid Mengistu; Owen Mugurungi; Prisca Chikwanda; Godfrey Musuka; Clement B Ndongmo; Sindisiwe Dlamini; Harriet Nuwagaba-Biribonwoha; Munyaradzi Pasipamire; Belete Tegbaru; Frehywot Eshetu; Samuel Biraro; Jennifer Ward; Dorothy Aibo; Andrew Kabala; George S Mgomella; Optatus Malewo; Jeremiah Mushi; Danielle Payne; Yohannes Mengistu; Fred Asiimwe; Judith D Shang; Emily K Dokubo; Laura T Eno; Anne-Cécile Zoung-Kanyi Bissek; Leonard Kingwara; Muthoni Junghae; John N Kiiru; Richard C N Mwesigwa; Shirish Balachandra; Roger Lobognon; Elizabeth Kampira; Mervi Detorio; Ernest L Yufenyuy; Kristin Brown; Hetal K Patel; Bharat S Parekh
Journal:  J Acquir Immune Defic Syndr       Date:  2021-08-01       Impact factor: 3.771

9.  Dried Blood Spots for Measuring Vibrio cholerae-specific Immune Responses.

Authors:  Anita S Iyer; Andrew S Azman; Malika Bouhenia; Lul O Deng; Cole P Anderson; Michael Graves; Pavol Kováč; Peng Xu; Edward T Ryan; Jason B Harris; David A Sack; Francisco J Luquero; Daniel T Leung
Journal:  PLoS Negl Trop Dis       Date:  2018-01-29
  9 in total

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