Literature DB >> 23944504

Crystallization of asymmetric patchy models for globular proteins in solution.

Diana Fusco1, Patrick Charbonneau.   

Abstract

Asymmetric patchy particle models have recently been shown to describe the crystallization of small globular proteins with near-quantitative accuracy. Here, we investigate how asymmetry in patch geometry and bond energy generally impacts the phase diagram and nucleation dynamics of this family of soft matter models. We find the role of the geometry asymmetry to be weak, but the energy asymmetry to markedly interfere with the crystallization thermodynamics and kinetics. These results provide a rationale for the success and occasional failure of the proposal of George and Wilson for protein crystallization conditions as well as physical guidance for developing more effective protein crystallization strategies.

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Year:  2013        PMID: 23944504     DOI: 10.1103/PhysRevE.88.012721

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  Monte Carlo simulation of kinetically slowed down phase separation.

Authors:  Štěpán Růžička; Michael P Allen
Journal:  Eur Phys J E Soft Matter       Date:  2015-06-30       Impact factor: 1.890

2.  Temperature-Dependent Interactions Explain Normal and Inverted Solubility in a γD-Crystallin Mutant.

Authors:  Amir R Khan; Susan James; Michelle K Quinn; Irem Altan; Patrick Charbonneau; Jennifer J McManus
Journal:  Biophys J       Date:  2019-07-19       Impact factor: 4.033

3.  Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study.

Authors:  Diana Fusco; Jeffrey J Headd; Alfonso De Simone; Jun Wang; Patrick Charbonneau
Journal:  Soft Matter       Date:  2014-01-14       Impact factor: 3.679

4.  Simulating the chromatin-mediated phase separation of model proteins with multiple domains.

Authors:  Marco Ancona; Chris A Brackley
Journal:  Biophys J       Date:  2022-05-28       Impact factor: 3.699

5.  Modeling phase transitions in mixtures of β-γ lens crystallins.

Authors:  Miha Kastelic; Yurij V Kalyuzhnyi; Vojko Vlachy
Journal:  Soft Matter       Date:  2016-08-15       Impact factor: 3.679

6.  Breakdown of the law of rectilinear diameter and related surprises in the liquid-vapor coexistence in systems of patchy particles.

Authors:  Jorge R Espinosa; Adiran Garaizar; Carlos Vega; Daan Frenkel; Rosana Collepardo-Guevara
Journal:  J Chem Phys       Date:  2019-06-14       Impact factor: 3.488

7.  Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms.

Authors:  Diana Fusco; Timothy J Barnum; Andrew E Bruno; Joseph R Luft; Edward H Snell; Sayan Mukherjee; Patrick Charbonneau
Journal:  PLoS One       Date:  2014-07-02       Impact factor: 3.240

8.  Ion-activated attractive patches as a mechanism for controlled protein interactions.

Authors:  Felix Roosen-Runge; Fajun Zhang; Frank Schreiber; Roland Roth
Journal:  Sci Rep       Date:  2014-11-12       Impact factor: 4.379

Review 9.  What macromolecular crystallogenesis tells us - what is needed in the future.

Authors:  Richard Giegé
Journal:  IUCrJ       Date:  2017-05-24       Impact factor: 4.769

Review 10.  Multivalent ions and biomolecules: Attempting a comprehensive perspective.

Authors:  Olga Matsarskaia; Felix Roosen-Runge; Frank Schreiber
Journal:  Chemphyschem       Date:  2020-07-20       Impact factor: 3.102

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