Literature DB >> 31422822

Temperature-Dependent Interactions Explain Normal and Inverted Solubility in a γD-Crystallin Mutant.

Amir R Khan1, Susan James2, Michelle K Quinn2, Irem Altan3, Patrick Charbonneau3, Jennifer J McManus4.   

Abstract

Protein crystal production is a major bottleneck in the structural characterization of proteins. To advance beyond large-scale screening, rational strategies for protein crystallization are crucial. Understanding how chemical anisotropy (or patchiness) of the protein surface, due to the variety of amino-acid side chains in contact with solvent, contributes to protein-protein contact formation in the crystal lattice is a major obstacle to predicting and optimizing crystallization. The relative scarcity of sophisticated theoretical models that include sufficient detail to link collective behavior, captured in protein phase diagrams, and molecular-level details, determined from high-resolution structural information, is a further barrier. Here, we present two crystal structures for the P23T + R36S mutant of γD-crystallin, each with opposite solubility behavior: one melts when heated, the other when cooled. When combined with the protein phase diagram and a tailored patchy particle model, we show that a single temperature-dependent interaction is sufficient to stabilize the inverted solubility crystal. This contact, at the P23T substitution site, relates to a genetic cataract and reveals at a molecular level the origin of the lowered and retrograde solubility of the protein. Our results show that the approach employed here may present a productive strategy for the rationalization of protein crystallization.
Copyright © 2019 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2019        PMID: 31422822      PMCID: PMC6731388          DOI: 10.1016/j.bpj.2019.07.019

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Aeolotopic interactions of globular proteins.

Authors:  A Lomakin; N Asherie; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Phase Diagram of Colloidal Solutions.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-12-02       Impact factor: 9.161

3.  Liquid-liquid separation in solutions of normal and sickle cell hemoglobin.

Authors:  Oleg Galkin; Kai Chen; Ronald L Nagel; Rhoda Elison Hirsch; Peter G Vekilov
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-17       Impact factor: 11.205

Review 4.  Force fields for protein simulations.

Authors:  Jay W Ponder; David A Case
Journal:  Adv Protein Chem       Date:  2003

Review 5.  Molecular biomimetics: nanotechnology through biology.

Authors:  Mehmet Sarikaya; Candan Tamerler; Alex K-Y Jen; Klaus Schulten; François Baneyx
Journal:  Nat Mater       Date:  2003-09       Impact factor: 43.841

6.  Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew.

Authors:  Hans W Horn; William C Swope; Jed W Pitera; Jeffry D Madura; Thomas J Dick; Greg L Hura; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2004-05-22       Impact factor: 3.488

7.  Molecular basis of a progressive juvenile-onset hereditary cataract.

Authors:  A Pande; J Pande; N Asherie; A Lomakin; O Ogun; J A King; N H Lubsen; D Walton; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

8.  Crystal cataracts: human genetic cataract caused by protein crystallization.

Authors:  A Pande; J Pande; N Asherie; A Lomakin; O Ogun; J King; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-22       Impact factor: 11.205

9.  Link between a novel human gammaD-crystallin allele and a unique cataract phenotype explained by protein crystallography.

Authors:  S Kmoch; J Brynda; B Asfaw; K Bezouska; P Novák; P Rezácová; L Ondrová; M Filipec; J Sedlácek; M Elleder
Journal:  Hum Mol Genet       Date:  2000-07-22       Impact factor: 6.150

10.  High-resolution X-ray crystal structures of human gammaD crystallin (1.25 A) and the R58H mutant (1.15 A) associated with aculeiform cataract.

Authors:  Ajit Basak; Orval Bateman; Christine Slingsby; Ajay Pande; Neer Asherie; Olutayo Ogun; George B Benedek; Jayanti Pande
Journal:  J Mol Biol       Date:  2003-05-16       Impact factor: 5.469

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