Literature DB >> 23941162

Switchable reporter enzymes based on mutually exclusive domain interactions allow antibody detection directly in solution.

Sambashiva Banala1, Stijn J A Aper, Werner Schalk, Maarten Merkx.   

Abstract

Detection of antibodies is essential for the diagnosis of many diseases including infections, allergies, and autoimmune diseases. Current heterogeneous immunoassays require multiple time-consuming binding and washing steps, which limits their application in point-of-care diagnostics and high-throughput screening. Here, we report switchable reporter enzymes that allow simple colorimetric detection of antibodies directly in solution. Our approach is based on the antibody-induced disruption of an intramolecular interaction between TEM1 β-lactamase and its inhibitor protein BLIP. Using the HIV1-p17 antibody as an initial target, the interaction between enzyme and inhibitor was carefully tuned to yield a reporter enzyme whose activity increased 10-fold in the presence of pM antibody concentrations. Reporter enzymes for two other antibodies (HA-tag and Dengue virus type I) were obtained by simply replacing the epitope sequences. This new sensor design represents a modular and generic approach to construct antibody reporter enzymes without the cumbersome optimization required by previous engineering strategies.

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Year:  2013        PMID: 23941162      PMCID: PMC3800467          DOI: 10.1021/cb400406x

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  20 in total

Review 1.  Point of care diagnostics: status and future.

Authors:  Vladimir Gubala; Leanne F Harris; Antonio J Ricco; Ming X Tan; David E Williams
Journal:  Anal Chem       Date:  2011-12-21       Impact factor: 6.986

2.  Thermodynamic investigation of the role of contact residues of beta-lactamase-inhibitory protein for binding to TEM-1 beta-lactamase.

Authors:  Jihong Wang; Zhen Zhang; Timothy Palzkill; Dar-Chone Chow
Journal:  J Biol Chem       Date:  2007-04-12       Impact factor: 5.157

3.  Development of homogeneous immunoassays based on protein fragment complementation.

Authors:  Rachel de las Heras; Scott R Fry; Jun Li; Ece Arel; Edward H Kachab; Stuart L Hazell; Chang-Yi Huang
Journal:  Biochem Biophys Res Commun       Date:  2008-03-19       Impact factor: 3.575

Review 4.  Engineering allosteric regulation into biological catalysts.

Authors:  Jacques Fastrez
Journal:  Chembiochem       Date:  2009-12-14       Impact factor: 3.164

5.  Modulation of enzyme activity by antibody binding to an alkaline phosphatase-epitope hybrid protein.

Authors:  C Brennan; K Christianson; T Surowy; W Mandecki
Journal:  Protein Eng       Date:  1994-04

Review 6.  Engineering protein switches: sensors, regulators, and spare parts for biology and biotechnology.

Authors:  Misha V Golynskiy; Melissa S Koay; Jan L Vinkenborg; Maarten Merkx
Journal:  Chembiochem       Date:  2011-01-26       Impact factor: 3.164

7.  Excimer-based peptide beacons: a convenient experimental approach for monitoring polypeptide-protein and polypeptide-oligonucleotide interactions.

Authors:  Kenneth J Oh; Kevin J Cash; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2006-11-01       Impact factor: 15.419

8.  Structural and kinetic characterization of a beta-lactamase-inhibitor protein.

Authors:  N C Strynadka; S E Jensen; K Johns; H Blanchard; M Page; A Matagne; J M Frère; M N James
Journal:  Nature       Date:  1994-04-14       Impact factor: 49.962

9.  Determinants of binding affinity and specificity for the interaction of TEM-1 and SME-1 beta-lactamase with beta-lactamase inhibitory protein.

Authors:  Zhen Zhang; Timothy Palzkill
Journal:  J Biol Chem       Date:  2003-08-21       Impact factor: 5.157

Review 10.  Designing switchable enzymes.

Authors:  Marc Ostermeier
Journal:  Curr Opin Struct Biol       Date:  2009-05-25       Impact factor: 6.809

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  11 in total

1.  Protease-based synthetic sensing and signal amplification.

Authors:  Viktor Stein; Kirill Alexandrov
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-29       Impact factor: 11.205

2.  A Modular, DNA-Based Beacon for Single-Step Fluorescence Detection of Antibodies and Other Proteins.

Authors:  Simona Ranallo; Marianna Rossetti; Kevin W Plaxco; Alexis Vallée-Bélisle; Francesco Ricci
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-04       Impact factor: 15.336

3.  De novo design of modular and tunable protein biosensors.

Authors:  Alfredo Quijano-Rubio; Hsien-Wei Yeh; Jooyoung Park; Hansol Lee; Robert A Langan; Scott E Boyken; Marc J Lajoie; Longxing Cao; Cameron M Chow; Marcos C Miranda; Jimin Wi; Hyo Jeong Hong; Lance Stewart; Byung-Ha Oh; David Baker
Journal:  Nature       Date:  2021-01-27       Impact factor: 49.962

4.  Controlling protein activity by dynamic recruitment on a supramolecular polymer platform.

Authors:  Sjors P W Wijnands; Wouter Engelen; René P M Lafleur; E W Meijer; Maarten Merkx
Journal:  Nat Commun       Date:  2018-01-04       Impact factor: 14.919

5.  Antibody-controlled actuation of DNA-based molecular circuits.

Authors:  Wouter Engelen; Lenny H H Meijer; Bram Somers; Tom F A de Greef; Maarten Merkx
Journal:  Nat Commun       Date:  2017-02-17       Impact factor: 14.919

6.  Efficient production of secretory Streptomyces clavuligerus β-lactamase inhibitory protein (BLIP) in Pichia pastoris.

Authors:  Kin-Ho Law; Man-Wah Tsang; Yuk-Ki Wong; Ming-San Tsang; Pui-Yee Lau; Kwok-Yin Wong; Kwok-Ping Ho; Yun-Chung Leung
Journal:  AMB Express       Date:  2018-04-20       Impact factor: 3.298

7.  Optical Control of Antibody Activity by Using Photocleavable Bivalent Peptide-DNA Locks.

Authors:  Simone F A Wouters; Elvira Wijker; Maarten Merkx
Journal:  Chembiochem       Date:  2019-09-03       Impact factor: 3.164

8.  Protein sensors combining both on-and-off model for antibody homogeneous assay.

Authors:  Jie Li; Jin-Lan Wang; Wen-Lu Zhang; Zeng Tu; Xue-Fei Cai; Yu-Wei Wang; Chun-Yang Gan; Hai-Jun Deng; Jing Cui; Zhao-Che Shu; Quan-Xin Long; Juan Chen; Ni Tang; Xue Hu; Ai-Long Huang; Jie-Li Hu
Journal:  Biosens Bioelectron       Date:  2022-03-31       Impact factor: 12.545

9.  Dual-Color Bioluminescent Sensor Proteins for Therapeutic Drug Monitoring of Antitumor Antibodies.

Authors:  Martijn van Rosmalen; Yan Ni; Daan F M Vervoort; Remco Arts; Susann K J Ludwig; Maarten Merkx
Journal:  Anal Chem       Date:  2018-02-22       Impact factor: 6.986

10.  Bioluminescent Antibodies through Photoconjugation of Protein G-Luciferase Fusion Proteins.

Authors:  Simone F A Wouters; Willem J P Vugs; Remco Arts; Nynke M de Leeuw; Roy W H Teeuwen; Maarten Merkx
Journal:  Bioconjug Chem       Date:  2020-01-22       Impact factor: 4.774

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