Literature DB >> 19937897

Engineering allosteric regulation into biological catalysts.

Jacques Fastrez1.   

Abstract

Enzymes and ribozymes constitute two classes of biological catalysts. The activity of many natural enzymes is regulated by the binding of ligands that have different structures than their substrates; these ligands are consequently called allosteric effectors. In most allosteric enzymes, the allosteric binding site lies far away from the active site. This implies that communication pathways must exist between these sites. While mechanisms of allosteric regulation were developed more than forty years ago, they continue to be revisited regularly. The improved understanding of these mechanisms has led in the past two decades to projects to transform several unregulated enzymes into allosterically regulated ones either by rational design or directed evolution techniques. More recently, ribozymes have also been the object of similar successful engineering efforts. In this review, after briefly summarising recent progress in the theories of allosteric regulation, several strategies to engineer allosteric regulations in enzymes and ribozymes are described and compared. These redesigned biological catalysts find applications in a variety of areas.

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Year:  2009        PMID: 19937897     DOI: 10.1002/cbic.200900590

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  8 in total

1.  Assembly and activation of a kinase ribozyme.

Authors:  Donald H Burke; Steven S Rhee
Journal:  RNA       Date:  2010-10-08       Impact factor: 4.942

2.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

Review 3.  Engineered control of enzyme structural dynamics and function.

Authors:  David D Boehr; Rebecca N D'Amico; Kathleen F O'Rourke
Journal:  Protein Sci       Date:  2018-02-16       Impact factor: 6.725

4.  Ribozyme Catalysis with a Twist: Active State of the Twister Ribozyme in Solution Predicted from Molecular Simulation.

Authors:  Colin S Gaines; Darrin M York
Journal:  J Am Chem Soc       Date:  2016-02-25       Impact factor: 15.419

5.  An electrochemical method for detecting the biomarker 4-HPA by allosteric activation of Acetobacter baumannii reductase C1 subunit.

Authors:  Somjai Teanphonkrang; Wipa Suginta; Jeerus Sucharitakul; Tamo Fukamizo; Pimchai Chaiyen; Albert Schulte
Journal:  J Biol Chem       Date:  2021-02-24       Impact factor: 5.157

6.  Rational engineering of enzyme allosteric regulation through sequence evolution analysis.

Authors:  Jae-Seong Yang; Sang Woo Seo; Sungho Jang; Gyoo Yeol Jung; Sanguk Kim
Journal:  PLoS Comput Biol       Date:  2012-07-12       Impact factor: 4.475

7.  Response speed control of helicity inversion based on a "regulatory enzyme"-like strategy.

Authors:  Shiho Sairenji; Shigehisa Akine; Tatsuya Nabeshima
Journal:  Sci Rep       Date:  2018-01-09       Impact factor: 4.379

8.  Switchable reporter enzymes based on mutually exclusive domain interactions allow antibody detection directly in solution.

Authors:  Sambashiva Banala; Stijn J A Aper; Werner Schalk; Maarten Merkx
Journal:  ACS Chem Biol       Date:  2013-08-13       Impact factor: 5.100

  8 in total

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