| Literature DB >> 23938038 |
Tina V A Hansen, Stig M Thamsborg, Annette Olsen, Roger K Prichard, Peter Nejsum.
Abstract
BACKGROUND: The whipworm Trichuris trichiura has been estimated to infect 604 - 795 million people worldwide. The current control strategy against trichuriasis using the benzimidazoles (BZs) albendazole (400 mg) or mebendazole (500 mg) as single-dose treatment is not satisfactory. The occurrence of single nucleotide polymorphisms (SNPs) in codons 167, 198 or 200 of the beta-tubulin gene has been reported to convey BZ-resistance in intestinal nematodes of veterinary importance. It was hypothesised that the low susceptibility of T. trichiura to BZ could be due to a natural occurrence of such SNPs. The aim of this study was to investigate whether these SNPs were present in the beta-tubulin gene of Trichuris spp. from humans and baboons. As a secondary objective, the degree of identity between T. trichiura from humans and Trichuris spp. from baboons was evaluated based on the beta-tubulin gene and the internal transcribed spacer 2 region (ITS2).Entities:
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Year: 2013 PMID: 23938038 PMCID: PMC3751491 DOI: 10.1186/1756-3305-6-236
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Figure 1Consensus sequences of a 467 bp beta-tubulin fragments, including codon 167, 198 and 200. Consensus sequences are from Trichuris spp. specimens obtained from humans and baboons. A T. trichiura sequence from GenBank (AF034219) is included in the figure (light grey). Codons 167, 198 and 200 are highlighted in dark grey as well as the intron spanning 46 bp. Abbreviations for variable sites and heterozygotes: Y C/T, R A/G, M A/C.
Nucleotide diversity (π) in a 467 bp fragment of the beta-tubulin gene from isolated from humans and baboons
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The nucleotide diversity in exon, intron and the overall fragment are shown as well as the nucleotide diversity within and between (italic) hosts.
Figure 2Maximum likelihood tree based on sequences (467 bp) of the beta-tubulin gene. The tree shows the genetic relationship between Trichuris spp. isolated from humans (eggs and worms) and baboons (worms) as well as T. trichiura [GenBank:AF034219]. The tree was rooted with Trichuris isolated from pig, mouse and dog [37]. Bootstrap values above 80 are reported. Identification of individual worms and eggs are listed after host identification and merged with (−) when obtained from the same host and segregating into the same clade. Scale bar: number of base substitutions per site. Abbreviations for host species, parasite gender and origin of parasitic material: H: human; HB: hamadryas baboon; OB: Olive baboon, F: female; M: male; KSP: Knuthenborg Safari Park; CZ: Copenhagen Zoo. The final two letters indicate the geographic origins (DK, Denmark; UG, Uganda; CH, China; US, United States).