| Literature DB >> 23936329 |
Dong-Dong Li1, Ya-Juan Qin, Jian Sun, Jing-Ran Li, Fei Fang, Qian-Ru Du, Yong Qian, Hai-Bin Gong, Hai-Liang Zhu.
Abstract
4-Anilinoquinazolines as an important class of protein kinase inhibitor are widely investigated forEntities:
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Year: 2013 PMID: 23936329 PMCID: PMC3731256 DOI: 10.1371/journal.pone.0069427
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Structure of EGFR and/or HER2 small molecule inhibitors with 4-anilinoquinazoline scaffold.
Figure 2Optimization strategy for dual EGFR/HER2 inhibitors based on the structures of compound 1and 2.
As shown in the picture, the main modifications would focus on the four parts of the basic 4-anilinoquinazoline scaffold (A, B, C, and D).
Figure 3Docking model of the initial compound 1 and compound 21 bound to the active sites of the EGFR and HER2 proteins (PDB code: 1M17 and 3RCD, respectively).
Inhibitor atoms colored as follows: C, Cyan; N, blue; O, red; key surrounding residues colored as follows: C, green; N, blue; O, red; S, yellow. (A) The binding mode of the control molecule Erlotinib in the binding site of raw EGFR protein crystal complex. It is noted that residue MET769 and HOH 10 could formed two hydrogen bonds with Erlotinib. (B) Compound 1 docked into the binding site of the EGFR protein. Its binding manner to the target protein seems very similar to the control Erlotinib. (C) The optimal docking pose of compound 21 into the ATP-binding pocket of the EGFR protein. (D) The binding conformation of the control molecule TAK-285 with the HER2 protein. Two residues MET801 and SER783 in the hinge binder play a key role in stabilizing ligand pose. (E) The optimal docking pose of compound 1 into the ATP-binding pocket of the HER2 protein. (F) The optimal docking pose of compound 21 into the ATP-binding pocket of the HER2 protein.
Figure 4Synthesis of the designed compounds.
(A) Synthesis of intermediates 3–8. Reagents and conditions: (i) Dimethylformamide dimethyl acetal/70–75°C; (ii) ArNH2/AcOH/70–75°C; (iii) Fe/AcOH/EtOH/H2O/70–80°C. (B) Synthesis of compounds 9–25. Reagents and conditions: (i) EtOH/40–60°C /3–4 h; (ii) EtOH/NaBH4/rt; (iii) SOCl2/70–80°C /reflux/4 h; (iv) EtOAC/K2CO3/ice-bath/overnight. (C) Synthesis of compounds 26 and 27. Reagents and conditions: (i) C2H5I/K2CO3/DMF/80°C /6 h; (ii) NaOH/EtOH/reflux/4 h; (iii) SOCl2/70–80°C /reflux/4 h; (iv) EtOAC/K2CO3/ice-bath/overnight.
Figure 5The CDOCKER_INTERACTION_ENERGY (kcal/mol) obtained from the docking study of compounds 9–27 by the CDOCKER protocol (Discovery Studio 3.5, Accelrys, Co.
Ltd). These results were mainly derived from two molecular docking studies, in which one was performed between compounds 9–27, Erlotinib and the EGFR protein (PDB code: 1M17), while the other one was performed between compounds 5–25, TAK-285 and the HER2 protein (PDB code: 3RCD). This sort of energy was represented by a negative value, which indicates the value the lower, the outcome the better. Compared to Erlotinib and TAK-285, most of target compounds would display higher affinity for EGFR and HER2, respectively.
Enzyme activities (IC50 a, μM) of compounds 9–27 against human EGFR and HER2 kinases.
| Compd. | EGFR | HER2 |
|
| 0.41±0.024 | 1.7±0.051 |
|
| 0.72±0.036 | 1.1±0.095 |
|
| 0.57±0.008 | 1.4±0.003 |
|
| 0.95±0.072 | 0.98±0.002 |
|
| 0.83±0.065 | 2.3±0.034 |
|
| 0.65±0.009 | 0.92±0.009 |
|
| 0.76±0.073 | 3.8±0.002 |
|
| 0.89±0.053 | 2.1±0.0087 |
|
| 1.2±0.071 | 2.8±0.0031 |
|
| 1.3±0.098 | 1.6±0.012 |
|
| 1.07±0.018 | 1.8±0.009 |
|
| 1.4±0.023 | 2.1±0.066 |
|
| 0.12±0.012 | 0.096±0.004 |
|
| 0.16±0.007 | 0.84±0.003 |
|
| 0.32±0.008 | 1.2±0.022 |
|
| 0.49±0.003 | 2±0.182 |
|
| 0.58±0.007 | 2.6±0.133 |
|
| 6.3±0.076 | 4.1±0.091 |
|
| 7.7±0.088 | 4.6±0.226 |
| Erlotinib | 0.015±0.003 | 1.52±0.002 |
| Lapatinib | 0.019±0.009 | 0.03±0.007 |
Concentration to inhibit by 50% the phosphorylation of a polyglutamic acid/tyrosine random copolymer by EGFR enzyme (prepared from human A431 carcinoma cell vesicles by immunoaffinity chromatography) and HER2 enzyme (prepared from human MCF-7 breast cancer cell vesicles by immunoaffinity chromatography). Mean values in Micromolar, >1 determination.
Figure 6Results of kinase assays of compounds 9–27.
(A) Inhibitory activity of compounds 9–27 against EGFR and HER2 protein kinases were represented as a bar graph. The black bar represented the IC50 values of all the compounds against EGFR tyrosine kinase in vitro, while the white one represented that of these compounds against HER2 tyrosine kinase. (B) Kinase selectivity profile of compound 21. Potency is represented by pIC50.
In vitro antiproliferative activity (IC50, μM) against three human tumor cell lines.
| Compounds | Cellular IC50 ( | ||
| A549 | MCF-7 | A431 | |
|
| 2.37±0.089 | 0.77±0.008 | 0.98±0.003 |
|
| 1.93±0.071 | 0.84±0.004 | 1.03±0.027 |
|
| 2.13±0.128 | 0.90±0.018 | 0.87±0.009 |
|
| 1.82±0.062 | 1.07±0.016 | 1.14±0.036 |
|
| 2.17±0.049 | 0.92±0.012 | 1.26±0.051 |
|
| 1.59±0.038 | 0.80±0.005 | 0.92±0.062 |
|
| 2.12±0.022 | 0.81±0.033 | 0.96±0.005 |
|
| 1.65±0.094 | 0.99±0.006 | 1.32±0.126 |
|
| 1.59±0.035 | 1.21±0.029 | 1.46±0.027 |
|
| 0.80±0.004 | 1.23±0.035 | 1.62±0.008 |
|
| 1.77±0.056 | 1.12±0.087 | 1.28±0.013 |
|
| 1.80±0.167 | 1.31±0.029 | 1.39±0.023 |
|
| 1.64±0.027 | 0.49±0.018 | 0.67±0.002 |
|
| 1.39±0.054 | 0.61±0.005 | 0.74±0.006 |
|
| 1.36±0.016 | 0.55±0.007 | 0.84±0.009 |
|
| 1.30±0.012 | 0.47±0.004 | 0.63±0.004 |
|
| 1.69±0.078 | 0.74±0.013 | 0.88±0.011 |
|
| 1.58±0.093 | 0.82±0.082 | 0.76±0.002 |
|
| 1.78±0.034 | 1.29±0.076 | 1.48±0.034 |
|
| 0.92±0.013 | 1.07±0.028 | 0.40±0.009 |
|
| 1.12±0.022 | 0.21±0.003 | 0.33±0.005 |
Antiproliferative activity was measured using the WST-1 assay. Values are the average of two independent experiments run in triplicate. Variation was generally 5%.
Cancer cells kindly supplied by State Key Laboratory of Pharmaceutical. Biotechnology, Nanjing University; A549 (carcinomic human alveolar basal epithelial cell), MCF-7 (breast cancer, with Her2/neu protein overexpression) and A431 (overexpression of EGFR).
In Vitro Cellular Activities of 21.
| Tissue | Cell line | Character | IC50 ( | |
| 21 | Lapatinib | |||
| Breast tigcancer | MDA- MB-453 | HER-2++, PTEN deficiency | 0.92±0.019 | 0.72±0.023 |
| NSCLC | H1781 | HER-2 G776ins V_G/C | 0.77±0.034 | 2.1±0.034 |
| H1975 | EGFR L858R/ T790M | 3.3±0.233 | 3.9±0.419 | |
Cancer cells were purchased from Nanjing KeyGen Biotech Co. Ltd, and subcultured by State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University.
The description was abstracted by the reference [27].
Antiproliferative activity was measured using the WST-1 assay. Values are the average of two independent experiments run in triplicate. Variation was generally 5%.
NSCLC: non-small-cell lung cancer.