| Literature DB >> 23935374 |
Mark Linch1, Jeroen Claus, Charlotte Benson.
Abstract
Gastrointestinal stromal tumors (GISTs) are the most common sarcoma of the gastrointestinal tract, with transformation typically driven by activating mutations of c-KIT and less commonly platelet-derived growth factor receptor alpha (PDGFRA). Successful targeting of c-KIT and PDGFRA with imatinib, a tyrosine kinase inhibitor (TKI), has had a major impact in advanced GIST and as an adjuvant and neoadjuvant treatment. If treatment with imatinib fails, further lines of TKI therapy have a role, but disease response is usually only measured in months, so strategies to maximize the benefit from imatinib are paramount. Here, we provide an overview of the structure and signaling of c-KIT coupled with a review of the clinical trials of imatinib in GIST. In doing so, we make recommendations about the duration of imatinib therapy and suggest how best to utilize imatinib in order to improve patient outcomes in the future.Entities:
Keywords: adjuvant; c-KIT; gastrointestinal stromal tumors; imatinib; mutations; resistance; treatment
Year: 2013 PMID: 23935374 PMCID: PMC3735340 DOI: 10.2147/OTT.S31260
Source DB: PubMed Journal: Onco Targets Ther ISSN: 1178-6930 Impact factor: 4.147
Figure 1Structural features of the catalytic c-KIT domain. (A) Inactive conformation of the c-KIT kinase domain (PDB code 1T45) with important motifs highlighted. The catalytic site is bordered by a variety of motifs required for activity. The glycine-rich loop (lime), HRD-motif (red), and K623 (pink) coordinate adenosine triphosphate binding and phosphotransfer. There is a charged interaction between K623 and E640 in the α-C helix (teal) that helps stabilizes the conformation. Because the inhibitory juxtamembrane (JM) region is bound (orange), the A-loop (blue) is in an “out” position. (B) Imatinib binds the inactive conformation of c-KIT (PDB codes 1T45 and 1T46). Compared with the active state (green), the imatinib-bound structure of c-KIT (red) has a shift of the α-C helix and DFG-motif to form an inactive conformation of the kinase.
Figure 2Relative frequency of c-KIT mutations in gastrointestinal stromal tumors. Top panel shows the relative frequency of mutations in treatment-naïve patients. Where the mutation results in more than one amino acid substitution/deletion/insertion, the most N-terminal residue is denoted. The total number of gastrointestinal stromal tumor samples in this data set is 7254 for which there were 3903 unique mutated samples. Mid-panel shows mRNA of c-KIT denoting the 21 exons. Lower panel shows the relative frequency of mutations in patients who had progressed on imatinib. Two exon hot spots are highlighted with a dotted orange line.
Selected imatinib sensitizing and desensitizing mutations of c-KIT
| Exon | Domain | Amino acids | Consequence | Structural rationale | Reference |
|---|---|---|---|---|---|
| Exon 9 | Extracellular | 502–503 | Activation | Undergoes constitutive oligomerization | Lux et al |
| Exon 11 | JM | Deletion 555–557 | Tends to confer constitutive activation and correlate with high response rates to imatinib | Modeling has demonstrated that the JM domain induced steric hindrance at entrance to nucleotide binding pocket | Miettinen et al |
| Exon 11 | JM | W557G/Y578C | Constitutively active and imatinib-sensitizing mutational combination | Release of JM steric hindrance | Conca et al |
| Exon 13 | NBP | K642E substitution | Activating, found as a germ-line mutation | Charge reversal (positive to negative) | Roskoski et al |
| Exon 11 | JM | L576P (Rare) | Insensitive to imatinib | Computer modeling suggests that L576P/KIT is two times less sensitive than the wild-type counterpart | Conca et al |
| Exon 14 | NBP | T670I | Resistance to imatinib | Gatekeeper residue to a hydrophobic back pocket. Access of imatinib to back pocket hindered by substitution to isoleucine | Tamborini et al |
| Exon 14 | NBP | V654A | Resistance to imatinib | Steric hindrance of imatinib binding | Tamborini |
| Exon 17 | A-loop | D816V | Activating and imatinib insensitive | Predicted DFG in that IM is unable to bind | Pierotti et al |
| Exon 17 | A-loop | D820N | Activating and imatinib-insensitive | Predicted DFG in that IM is unable to bind | Pierotti et al |
| Exon 17 | A-loop | T823D | Activating and imatinib-insensitive | Unknown mechanism: in vitro autophosphorylation studies suggest that this is a kinase-dead mutant | DiNitto et al |
Note: This is not an exhaustive list of mutations.
Abbreviations: JM, juxtamembrane; A-loop, activation loop; NBP, nucleotide binding pocket; IM, imatininb.
c-KIT signaling molecules downstream
| Technique | Model | Targets identified | Reference |
|---|---|---|---|
| Immunohistochemistry | Human GIST tumors | MAPK(br/)AKT(br/)p70S6K | Duensing et al |
| Immunohistochemistry | Human GIST cell lines treated with imatinib | MAPK p42/44 (part of Ras > Raf > MEK > Erk signaling axis) | Duensing et al |
| Immunohistochemistry | Imatinib treatment of transgenic GIST mice | PI3K/Akt (PDK1, AKT, mTOR, GSK3, p70S6K, and 4EBP1), STAT3, and STAT5 pathways | Rossi et al |
| Gene profiling | Human GIST tumors | Baird et al | |
| Gene profiling | Imatinib treatment of transgenic GIST mice | 124 genes differentially expressed: increased; | Rossi et al |
| Copy number and gene expression data | Human GIST tumors | WNT7/β-catenin pathways, apoptotic pathways, heat shock proteins, ubiquitination factors, and histone deacetylases | Astolfi et al |
Abbreviation: GIST, gastrointestinal stromal tumor.
Phenotypic effects of inhibition of signaling pathways associated with c-KIT
| Inhibitor | Inhibitor target | Model system | Phenotypic effect | Reference |
|---|---|---|---|---|
| BKM120 and BEZ | PI3K | GIST cell lines | Growth suppression | Li et al |
| GDC-0941 | PI3K | GIST cell line xenograft | Delayed tumor growth reduced tumor burden, sustained response | Floris et al |
| RAD001 | mTOR | GIST cell lines and xenograft | Decreased pAKT and decreased tumor growth (FDG-PET) | Rossi et al |
| PKCθ shRNA | PKCθ | GIST cell lines | Decreased proliferation, increased apoptosis Decreased c-KIT protein | Duensing et al |
| 17-AAG | Hsp90 | GIST cell lines | Decreased proliferation, increased apoptosis | Bauer et al |
| AT13387 | Hsp90 | GIST cell lines and xenograft | Decreased proliferation synergy with imatinib | Smyth et al |
| IPI-504 | Hsp90 | GIST cell line xenograft | Tumor regression(br/)Increased necrosis(br/)More potent with imatinib | Floris et al |
| LBH589 | HDAC | GIST cell lines | Decreased proliferation(br/)Reduced KIT mRNA(br/)Acetylation of Hsp90 | Muhlenberg et al |
| SR1 (monoclonal antibody) | c-KIT | GIST cell lines and xenograft | Reduced growth | Edris et al |
Abbreviations: GIST, gastrointestinal stromal tumor; FDG-PET, fluorodeoxyglucose positron emission tomography; HDAC, histone deacetylase; Hsp90, heat shock protein 90.
Landmark imatinib trials in patients with advanced gastrointestinal stromal tumors
| Phase | Sponsor | n | PFS (months) | RR (%) | Reference |
|---|---|---|---|---|---|
| I | EORTC | 35 | NR | 54% | Van Oosterom et al |
| II | US-Finland | 147 | 24 | 63% | Demetri et al |
| B2222 | 29 | 68% | Blanke et al | ||
| II | EORTC | 27 | NR | 73% | Verweij et al |
| III | North American Intergroup S0033 | 746 | 18–20 | 45% | Blanke et al |
| III | EORTC/ISG/AGITG | 946 | NR 22 | 52% | Verweij et al |
Abbreviations: PFS, progression-free survival; RR, response rate; NR, not reported; EORTC, European Organisation for Research and Treatment of Cancer; ISG, Italian Sarcoma Group; AGITG, Australasian Gastrointestinal Trials Group.