Literature DB >> 23928110

Allele frequencies of 19 autosomal STR loci in Manchu population of China with phylogenetic structure among worldwide populations.

Jian Liu1, Li Guo, Rong Qi, Shu-Yin Li, Jiao-Yang Yin, Wei Zhang, Zhongfu Sun, Xiurong Tian, Bing Gao.   

Abstract

The aim of this study was to estimate the allelic frequencies of the 19 STR loci with the Goldeneye™ DNA ID system 20A kit in a sample of 150 Manchu individuals from China to be used for forensic purposes and population studies. The observed heterozygosity(HO)values of these 19 STR loci ranged from 0.600 (D3S1358) to 0.914 (D18S51), the expected (HE) ranged from 0.615 (TPOX) to 0.876 (D16S1043). The power of discrimination (PD) values were found to range from 0.793 (TPOX) to 0.950 (D16S1043) and the probability of exclusion (PE) varies between 0.291 (D3S1358) and 0.825 (D18S51 and Penta E). Among all the 19 loci, D16S1043 had the highest polymorphism (PIC=0.860), whereas TPOX had the lowest (PIC=0.550). For the 19 loci, the combined power of discrimination and the combined probability of exclusion are 0.9999999999999999999942 and 0.999999996777, respectively. The phylogenetic tree established among worldwide population shows different populations who say the same language usually have a close genetic relationship with each other across the three language families studied (Sino-Tibetan, Altaic and Arabic).
© 2013 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Forensic science; HE; HO; HWE; Hardy–Weinberg equilibrium; ID; PD; PE; PIC; PM; Phylogenetic tree; Population genetics; STR; expected heterozygosity; identification; matching probability; observed heterozygosity; p; polymorphism information content; power of discrimination; probability of exclusion; probability values of exact tests for Hardy–Wei; short tandem repeats

Mesh:

Year:  2013        PMID: 23928110     DOI: 10.1016/j.gene.2013.07.033

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


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