Literature DB >> 23924345

Disruptive by design: a perspective on engineering in analytical chemistry.

Amy E Herr1.   

Abstract

Perhaps paradoxically, we argue that the biological sciences are "data-limited". In contrast to the glut of DNA sequencing data available, high-throughput protein analysis is expensive and largely inaccessible. Hence, we posit that access to robust protein-level data is inadequate. Here, we use the framework of the formal engineering design process to both identify and understand the problems facing measurement science in the 21st century. In particular, discussion centers on the notable challenge of realizing protein analyses that are as effective (and transformative) as genomics tools. This Perspective looks through the lens of a case study on protein biomarker validation and verification, to highlight the importance of iterative design in realizing significant advances over currently available measurement capabilities in the candidate or targeted proteomics space. The Perspective follows a podium presentation given by the author at The 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS 2012), specifically focusing on novel targeted proteomic measurement tools based in microfluidic design. The role of unmet needs identification, iteration in concept generation and development, and the existing gap in rapid prototyping tools for separations are all discussed.

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Year:  2013        PMID: 23924345      PMCID: PMC3855236          DOI: 10.1021/ac4010887

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  27 in total

Review 1.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

2.  Bringing diagnostic technologies to the clinical laboratory: Rigor, regulation, and reality.

Authors:  Gordon Whiteley
Journal:  Proteomics Clin Appl       Date:  2008       Impact factor: 3.494

3.  Bring on the biomarkers.

Authors:  George Poste
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

4.  Two-dimensional micro-separation technique for proteins and peptides, combining isoelectric focusing and gel gradient electrophoresis.

Authors:  R Rüchel
Journal:  J Chromatogr       Date:  1977-02-21

5.  Nano-lantern lights the way.

Authors:  Allison Doerr
Journal:  Nat Methods       Date:  2013-02       Impact factor: 28.547

6.  Microfluidic integration for automated targeted proteomic assays.

Authors:  Alex J Hughes; Robert K C Lin; Donna M Peehl; Amy E Herr
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

7.  New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences.

Authors:  Leroy E Hood; Gilbert S Omenn; Robert L Moritz; Ruedi Aebersold; Keith R Yamamoto; Michael Amos; Jennie Hunter-Cevera; Laurie Locascio
Journal:  Proteomics       Date:  2012-09       Impact factor: 3.984

8.  Western blotting using capillary electrophoresis.

Authors:  Gwendolyn J Anderson; Cynthia M Cipolla; Robert T Kennedy
Journal:  Anal Chem       Date:  2011-01-25       Impact factor: 6.986

Review 9.  Benzophenone photophores in biochemistry.

Authors:  G Dormán; G D Prestwich
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

10.  Nanofluidic proteomic assay for serial analysis of oncoprotein activation in clinical specimens.

Authors:  Alice C Fan; Debabrita Deb-Basu; Mathias W Orban; Jason R Gotlib; Yasodha Natkunam; Roger O'Neill; Rose-Ann Padua; Liwen Xu; Daryl Taketa; Amy E Shirer; Shelly Beer; Ada X Yee; David W Voehringer; Dean W Felsher
Journal:  Nat Med       Date:  2009-04-12       Impact factor: 53.440

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  2 in total

1.  Real-time shape approximation and fingerprinting of single proteins using a nanopore.

Authors:  Erik C Yusko; Brandon R Bruhn; Olivia M Eggenberger; Jared Houghtaling; Ryan C Rollings; Nathan C Walsh; Santoshi Nandivada; Mariya Pindrus; Adam R Hall; David Sept; Jiali Li; Devendra S Kalonia; Michael Mayer
Journal:  Nat Nanotechnol       Date:  2016-12-19       Impact factor: 39.213

2.  Recent Advances in Microscale Western Blotting.

Authors:  Brittany J Sanders; Daniel C Kim; Robert C Dunn
Journal:  Anal Methods       Date:  2016-09-15       Impact factor: 2.896

  2 in total

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