Literature DB >> 22807061

New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences.

Leroy E Hood1, Gilbert S Omenn, Robert L Moritz, Ruedi Aebersold, Keith R Yamamoto, Michael Amos, Jennie Hunter-Cevera, Laurie Locascio.   

Abstract

This White Paper sets out a Life Sciences Grand Challenge for Proteomics Technologies to enhance our understanding of complex biological systems, link genomes with phenotypes, and bring broad benefits to the biosciences and the US economy. The paper is based on a workshop hosted by the National Institute of Standards and Technology (NIST) in Gaithersburg, MD, 14-15 February 2011, with participants from many federal R&D agencies and research communities, under the aegis of the US National Science and Technology Council (NSTC). Opportunities are identified for a coordinated R&D effort to achieve major technology-based goals and address societal challenges in health, agriculture, nutrition, energy, environment, national security, and economic development.
© 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 22807061      PMCID: PMC4005326          DOI: 10.1002/pmic.201270086

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  22 in total

1.  Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

Authors:  Christopher R Kinsinger; James Apffel; Mark Baker; Xiaopeng Bian; Christoph H Borchers; Ralph Bradshaw; Mi-Youn Brusniak; Daniel W Chan; Eric W Deutsch; Bruno Domon; Jeff Gorman; Rudolf Grimm; William Hancock; Henning Hermjakob; David Horn; Christie Hunter; Patrik Kolar; Hans-Joachim Kraus; Hanno Langen; Rune Linding; Robert L Moritz; Gilbert S Omenn; Ron Orlando; Akhilesh Pandey; Peipei Ping; Amir Rahbar; Robert Rivers; Sean L Seymour; Richard J Simpson; Douglas Slotta; Richard D Smith; Stephen E Stein; David L Tabb; Danilo Tagle; John R Yates; Henry Rodriguez
Journal:  Proteomics       Date:  2011-12-14       Impact factor: 3.984

2.  A personal journey of discovery: developing technology and changing biology.

Authors:  Lee Hood
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2008       Impact factor: 10.745

3.  Towards a knowledge-based Human Protein Atlas.

Authors:  Mathias Uhlen; Per Oksvold; Linn Fagerberg; Emma Lundberg; Kalle Jonasson; Mattias Forsberg; Martin Zwahlen; Caroline Kampf; Kenneth Wester; Sophia Hober; Henrik Wernerus; Lisa Björling; Fredrik Ponten
Journal:  Nat Biotechnol       Date:  2010-12       Impact factor: 54.908

4.  Cell biology. A unifying role for prions in neurodegenerative diseases.

Authors:  Stanley B Prusiner
Journal:  Science       Date:  2012-06-22       Impact factor: 47.728

5.  Functional implications of structural predictions for alternative splice proteins expressed in Her2/neu-induced breast cancers.

Authors:  Rajasree Menon; Ambrish Roy; Srayanta Mukherjee; Saveliy Belkin; Yang Zhang; Gilbert S Omenn
Journal:  J Proteome Res       Date:  2011-10-28       Impact factor: 4.466

6.  Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics.

Authors:  Paola Picotti; Bernd Bodenmiller; Lukas N Mueller; Bruno Domon; Ruedi Aebersold
Journal:  Cell       Date:  2009-08-06       Impact factor: 41.582

7.  Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.

Authors:  An Chi; Curtis Huttenhower; Lewis Y Geer; Joshua J Coon; John E P Syka; Dina L Bai; Jeffrey Shabanowitz; Daniel J Burke; Olga G Troyanskaya; Donald F Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-07       Impact factor: 11.205

8.  The quantitative proteome of a human cell line.

Authors:  Martin Beck; Alexander Schmidt; Johan Malmstroem; Manfred Claassen; Alessandro Ori; Anna Szymborska; Franz Herzog; Oliver Rinner; Jan Ellenberg; Ruedi Aebersold
Journal:  Mol Syst Biol       Date:  2011-11-08       Impact factor: 11.429

9.  Advancing cell biology through proteomics in space and time (PROSPECTS).

Authors:  Angus I Lamond; Mathias Uhlen; Stevan Horning; Alexander Makarov; Carol V Robinson; Luis Serrano; F Ulrich Hartl; Wolfgang Baumeister; Anne Katrin Werenskiold; Jens S Andersen; Ole Vorm; Michal Linial; Ruedi Aebersold; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2012-02-06       Impact factor: 5.911

10.  The human proteome - a scientific opportunity for transforming diagnostics, therapeutics, and healthcare.

Authors:  Marc Vidal; Daniel W Chan; Mark Gerstein; Matthias Mann; Gilbert S Omenn; Danilo Tagle; Salvatore Sechi
Journal:  Clin Proteomics       Date:  2012-07-03       Impact factor: 3.988

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  21 in total

1.  Global protein expression analysis of molecular markers of DS-1-47, a component of implantation-promoting traditional chinese medicine.

Authors:  Yan-Ling Li; Xiao-Yan Zhang; Yu Leng; Yan-Li Wu; Jing Li; Yun-Xia Wu
Journal:  J Huazhong Univ Sci Technolog Med Sci       Date:  2016-12-07

Review 2.  Augmentation of crop productivity through interventions of omics technologies in India: challenges and opportunities.

Authors:  Rajesh Kumar Pathak; Mamta Baunthiyal; Dinesh Pandey; Anil Kumar
Journal:  3 Biotech       Date:  2018-10-19       Impact factor: 2.406

3.  An Optimized Method for Protein Extraction from OCT-Embedded Human Kidney Tissue for Protein Quantification by LC-MS/MS Proteomics.

Authors:  Marc Vrana; Anne Goodling; Maryam Afkarian; Bhagwat Prasad
Journal:  Drug Metab Dispos       Date:  2016-08-01       Impact factor: 3.922

4.  Disruptive by design: a perspective on engineering in analytical chemistry.

Authors:  Amy E Herr
Journal:  Anal Chem       Date:  2013-08-07       Impact factor: 6.986

5.  Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.

Authors:  Gilbert S Omenn
Journal:  Biochim Biophys Acta       Date:  2013-11-08

6.  Interlaboratory studies and initiatives developing standards for proteomics.

Authors:  Alexander R Ivanov; Christopher M Colangelo; Craig P Dufresne; David B Friedman; Kathryn S Lilley; Karl Mechtler; Brett S Phinney; Kristie L Rose; Paul A Rudnick; Brian C Searle; Scott A Shaffer; Susan T Weintraub
Journal:  Proteomics       Date:  2013-02-19       Impact factor: 3.984

7.  Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins.

Authors:  Lydie Lane; Amos Bairoch; Ronald C Beavis; Eric W Deutsch; Pascale Gaudet; Emma Lundberg; Gilbert S Omenn
Journal:  J Proteome Res       Date:  2013-12-23       Impact factor: 4.466

Review 8.  The omic approach to parasitic trematode research-a review of techniques and developments within the past 5 years.

Authors:  Orçun Haçarız; Gearóid P Sayers
Journal:  Parasitol Res       Date:  2016-04-28       Impact factor: 2.289

Review 9.  Innovations in proteomic profiling of cancers: alternative splice variants as a new class of cancer biomarker candidates and bridging of proteomics with structural biology.

Authors:  Gilbert S Omenn; Rajasree Menon; Yang Zhang
Journal:  J Proteomics       Date:  2013-04-17       Impact factor: 4.044

10.  Proteomics and the eye.

Authors:  Richard D Semba; Jan J Enghild
Journal:  Proteomics Clin Appl       Date:  2014-04       Impact factor: 3.494

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