Literature DB >> 23918422

Gene tagging with engineered Ds elements in maize.

Yubin Li1, Gregorio Segal, Qinghua Wang, Hugo K Dooner.   

Abstract

We describe here protocols for isolating genes in maize using Dissociation (Ds) transposons marked with a green fluorescent protein (GFP) transgene. The introduced marker enables the phenotypic scoring of the nonautonomous element and the anchoring of unique primers on the element to facilitate the isolation of the adjacent DNA by PCR. Transposons such as Ds transpose preferentially to sites closely linked to the Ds-launching platform. Based on this transposition behavior, a genetic resource is being created to mobilize a modified Ds element from different starting sites in the genome. Enough transgenic lines are being generated to cover most of the maize genome, allowing the targeted tagging of most genes from a Ds-launching platform located nearby.

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Year:  2013        PMID: 23918422     DOI: 10.1007/978-1-62703-568-2_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  Exogenous Transposable Elements Circumvent Identity-Based Silencing, Permitting the Dissection of Expression-Dependent Silencing.

Authors:  Dalen Fultz; R Keith Slotkin
Journal:  Plant Cell       Date:  2017-02-13       Impact factor: 11.277

2.  A transposon surveillance mechanism that safeguards plant male fertility during stress.

Authors:  Yang-Seok Lee; Robert Maple; Julius Dürr; Alexander Dawson; Saleh Tamim; Charo Del Genio; Ranjith Papareddy; Anding Luo; Jonathan C Lamb; Stefano Amantia; Anne W Sylvester; James A Birchler; Blake C Meyers; Michael D Nodine; Jacques Rouster; Jose Gutierrez-Marcos
Journal:  Nat Plants       Date:  2021-01-04       Impact factor: 15.793

3.  The unusual dRemp retrotransposon is abundant, highly mutagenic, and mobilized only in the second pollen mitosis of some maize lines.

Authors:  Qinghua Wang; Jun Huang; Yubin Li; Hugo K Dooner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-13       Impact factor: 11.205

4.  Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads.

Authors:  Jiaqiang Dong; Yaping Feng; Dibyendu Kumar; Wei Zhang; Tingting Zhu; Ming-Cheng Luo; Joachim Messing
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-27       Impact factor: 11.205

5.  Maize YABBY Genes drooping leaf1 and drooping leaf2 Regulate Plant Architecture.

Authors:  Josh Strable; Jason G Wallace; Erica Unger-Wallace; Sarah Briggs; Peter J Bradbury; Edward S Buckler; Erik Vollbrecht
Journal:  Plant Cell       Date:  2017-07-11       Impact factor: 11.277

6.  Maize defective kernel mutant generated by insertion of a Ds element in a gene encoding a highly conserved TTI2 cochaperone.

Authors:  Nelson Garcia; Yubin Li; Hugo K Dooner; Joachim Messing
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

7.  An Efficient System for Ds Transposon Tagging in Brachypodium distachyon.

Authors:  Hongyu Wu; Xiaodong Xue; Caihua Qin; Yi Xu; Yuyu Guo; Xiang Li; Wei Lv; Qinxia Li; Chuangxue Mao; Luzhao Li; Suzhen Zhao; Xiaoquan Qi; Hailong An
Journal:  Plant Physiol       Date:  2019-03-13       Impact factor: 8.340

8.  TED, an autonomous and rare maize transposon of the mutator superfamily with a high gametophytic excision frequency.

Authors:  Yubin Li; Linda Harris; Hugo K Dooner
Journal:  Plant Cell       Date:  2013-09-13       Impact factor: 11.277

9.  InsertionMapper: a pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data.

Authors:  Wenwei Xiong; Limei He; Yubin Li; Hugo K Dooner; Chunguang Du
Journal:  BMC Genomics       Date:  2013-10-04       Impact factor: 3.969

10.  MaizeGDB update: new tools, data and interface for the maize model organism database.

Authors:  Carson M Andorf; Ethalinda K Cannon; John L Portwood; Jack M Gardiner; Lisa C Harper; Mary L Schaeffer; Bremen L Braun; Darwin A Campbell; Abhinav G Vinnakota; Venktanaga V Sribalusu; Miranda Huerta; Kyoung Tak Cho; Kokulapalan Wimalanathan; Jacqueline D Richter; Emily D Mauch; Bhavani S Rao; Scott M Birkett; Taner Z Sen; Carolyn J Lawrence-Dill
Journal:  Nucleic Acids Res       Date:  2015-10-01       Impact factor: 16.971

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