Literature DB >> 23913692

Structural changes during cysteine desulfurase CsdA and sulfur acceptor CsdE interactions provide insight into the trans-persulfuration.

Sunmin Kim1, SangYoun Park2.   

Abstract

In Escherichia coli, three cysteine desulfurases (IscS, SufS, and CsdA) initiate the delivery of sulfur for various biological processes such as the biogenesis of Fe-S clusters. The sulfur generated as persulfide on a cysteine residue of cysteine desulfurases is further transferred to Fe-S scaffolds (e.g. IscU) or to intermediate cysteine-containing sulfur acceptors (e.g. TusA, SufE, and CsdE) prior to its utilization. Here, we report the structures of CsdA and the CsdA-CsdE complex, which provide insight into the sulfur transfer mediated by the trans-persulfuration reaction. Analysis of the structures indicates that the conformational flexibility of the active cysteine loop in CsdE is essential for accepting the persulfide from the cysteine of CsdA. Additionally, CsdA and CsdE invoke a different binding mode than those of previously reported cysteine desulfurase (IscS) and sulfur acceptors (TusA and IscU). Moreover, the conservation of interaction-mediating residues between CsdA/SufS and CsdE/SufE further suggests that the SufS-SufE interface likely resembles that of CsdA and CsdE.

Entities:  

Keywords:  CsdA; CsdE; Cysteine Desulfurase; Iron; Iron-Sulfur Protein; Structural Biology; Sulfur; Sulfur Acceptor; X-ray Crystallography; trans-Persulfuration

Mesh:

Substances:

Year:  2013        PMID: 23913692      PMCID: PMC3779715          DOI: 10.1074/jbc.M113.480277

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  35 in total

1.  Crystal structure of the cystine C-S lyase from Synechocystis: stabilization of cysteine persulfide for FeS cluster biosynthesis.

Authors:  T Clausen; J T Kaiser; C Steegborn; R Huber; D Kessler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase.

Authors:  T Fujii; M Maeda; H Mihara; T Kurihara; N Esaki; Y Hata
Journal:  Biochemistry       Date:  2000-02-15       Impact factor: 3.162

3.  High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division.

Authors:  E Katoh; T Hatta; H Shindo; Y Ishii; H Yamada; T Mizuno; T Yamazaki
Journal:  J Mol Biol       Date:  2000-11-24       Impact factor: 5.469

4.  Automated protein model building combined with iterative structure refinement.

Authors:  A Perrakis; R Morris; V S Lamzin
Journal:  Nat Struct Biol       Date:  1999-05

5.  Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.

Authors:  Christopher D Lima
Journal:  J Mol Biol       Date:  2002-02-01       Impact factor: 5.469

6.  Sulfur transfer from IscS to IscU: the first step in iron-sulfur cluster biosynthesis.

Authors:  A D Smith; J N Agar; K A Johnson; J Frazzon; I J Amster; D R Dean; M K Johnson
Journal:  J Am Chem Soc       Date:  2001-11-07       Impact factor: 15.419

7.  Crystal structure of a NifS-like protein from Thermotoga maritima: implications for iron sulphur cluster assembly.

Authors:  J T Kaiser; T Clausen; G P Bourenkow; H D Bartunik; S Steinbacher; R Huber
Journal:  J Mol Biol       Date:  2000-03-24       Impact factor: 5.469

8.  A nifS-like gene, csdB, encodes an Escherichia coli counterpart of mammalian selenocysteine lyase. Gene cloning, purification, characterization and preliminary x-ray crystallographic studies.

Authors:  H Mihara; M Maeda; T Fujii; T Kurihara; Y Hata; N Esaki
Journal:  J Biol Chem       Date:  1999-05-21       Impact factor: 5.157

9.  Crystal structure of IscS, a cysteine desulfurase from Escherichia coli.

Authors:  Jill R Cupp-Vickery; Hugo Urbina; Larry E Vickery
Journal:  J Mol Biol       Date:  2003-07-25       Impact factor: 5.469

10.  Mechanistic studies of the SufS-SufE cysteine desulfurase: evidence for sulfur transfer from SufS to SufE.

Authors:  Sandrine Ollagnier-de-Choudens; David Lascoux; Laurent Loiseau; Frédéric Barras; Eric Forest; Marc Fontecave
Journal:  FEBS Lett       Date:  2003-12-04       Impact factor: 4.124

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  18 in total

1.  Structural Evidence for Dimer-Interface-Driven Regulation of the Type II Cysteine Desulfurase, SufS.

Authors:  Jack A Dunkle; Michael R Bruno; F Wayne Outten; Patrick A Frantom
Journal:  Biochemistry       Date:  2019-01-07       Impact factor: 3.162

2.  SufE D74R Substitution Alters Active Site Loop Dynamics To Further Enhance SufE Interaction with the SufS Cysteine Desulfurase.

Authors:  Yuyuan Dai; Dokyong Kim; Guangchao Dong; Laura S Busenlehner; Patrick A Frantom; F Wayne Outten
Journal:  Biochemistry       Date:  2015-07-31       Impact factor: 3.162

3.  Structural evidence for a latch mechanism regulating access to the active site of SufS-family cysteine desulfurases.

Authors:  Jack A Dunkle; Michael R Bruno; Patrick A Frantom
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-02-25       Impact factor: 7.652

Review 4.  Fe-S cluster biogenesis by the bacterial Suf pathway.

Authors:  Matthew Blahut; Enis Sanchez; Claire E Fisher; F Wayne Outten
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-08-18       Impact factor: 4.739

Review 5.  Recent advances in the Suf Fe-S cluster biogenesis pathway: Beyond the Proteobacteria.

Authors:  F Wayne Outten
Journal:  Biochim Biophys Acta       Date:  2014-11-07

6.  Direct observation of intermediates in the SufS cysteine desulfurase reaction reveals functional roles of conserved active-site residues.

Authors:  Matthew Blahut; Courtney E Wise; Michael R Bruno; Guangchao Dong; Thomas M Makris; Patrick A Frantom; Jack A Dunkle; F Wayne Outten
Journal:  J Biol Chem       Date:  2019-06-27       Impact factor: 5.157

7.  Escherichia coli SufE sulfur transfer protein modulates the SufS cysteine desulfurase through allosteric conformational dynamics.

Authors:  Harsimran Singh; Yuyuan Dai; F Wayne Outten; Laura S Busenlehner
Journal:  J Biol Chem       Date:  2013-11-06       Impact factor: 5.157

8.  X-ray structures of Nfs2, the plastidial cysteine desulfurase from Arabidopsis thaliana.

Authors:  Thomas Roret; Henri Pégeot; Jérémy Couturier; Guillermo Mulliert; Nicolas Rouhier; Claude Didierjean
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-08-29       Impact factor: 1.056

9.  The crystal structure and small-angle X-ray analysis of CsdL/TcdA reveal a new tRNA binding motif in the MoeB/E1 superfamily.

Authors:  Miguel López-Estepa; Ana Ardá; Martin Savko; Adam Round; William E Shepard; Marta Bruix; Miquel Coll; Francisco J Fernández; Jesús Jiménez-Barbero; M Cristina Vega
Journal:  PLoS One       Date:  2015-04-21       Impact factor: 3.240

10.  A novel cysteine desulfurase influencing organosulfur compounds in Lentinula edodes.

Authors:  Ying Liu; Xiao-Yu Lei; Lian-Fu Chen; Yin-Bing Bian; Hong Yang; Salam A Ibrahim; Wen Huang
Journal:  Sci Rep       Date:  2015-06-09       Impact factor: 4.379

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