Literature DB >> 23912899

Cytosine modifications in neurodevelopment and diseases.

Bing Yao1, Peng Jin.   

Abstract

DNA methylation has been studied comprehensively and linked to both normal neurodevelopment and neurological diseases. The recent identification of several new DNA modifications, including 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxylcytosine, has given us a new perspective on the previously observed plasticity in 5mC-dependent regulatory processes. Here, we review the latest research into these cytosine modifications, focusing mainly on their roles in neurodevelopment and diseases.

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Year:  2013        PMID： 23912899      PMCID： PMC3870031          DOI： 10.1007/s00018-013-1433-y

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN： 1420-682X            Impact factor:   9.261


  138 in total

1.  DNA ticketing theory of memory.

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Journal:  Nature       Date:  1969-08-09       Impact factor: 49.962

2.  Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome.

Authors:  Shin-ichi Horike; Shutao Cai; Masaru Miyano; Jan-Fang Cheng; Terumi Kohwi-Shigematsu
Journal:  Nat Genet       Date:  2004-12-19       Impact factor: 38.330

3.  Mutations in ZBTB24 are associated with immunodeficiency, centromeric instability, and facial anomalies syndrome type 2.

Authors:  Jessica C de Greef; Jun Wang; Judit Balog; Johan T den Dunnen; Rune R Frants; Kirsten R Straasheijm; Caner Aytekin; Mirjam van der Burg; Laurence Duprez; Alina Ferster; Andrew R Gennery; Giorgio Gimelli; Ismail Reisli; Catharina Schuetz; Ansgar Schulz; Dominique F C M Smeets; Yves Sznajer; Cisca Wijmenga; Marja C van Eggermond; Monique M van Ostaijen-Ten Dam; Arjan C Lankester; Maarten J D van Tol; Peter J van den Elsen; Corry M Weemaes; Silvère M van der Maarel
Journal:  Am J Hum Genet       Date:  2011-05-19       Impact factor: 11.025

4.  DNMT3A mutations in acute myeloid leukemia.

Authors:  Timothy J Ley; Li Ding; Matthew J Walter; Michael D McLellan; Tamara Lamprecht; David E Larson; Cyriac Kandoth; Jacqueline E Payton; Jack Baty; John Welch; Christopher C Harris; Cheryl F Lichti; R Reid Townsend; Robert S Fulton; David J Dooling; Daniel C Koboldt; Heather Schmidt; Qunyuan Zhang; John R Osborne; Ling Lin; Michelle O'Laughlin; Joshua F McMichael; Kim D Delehaunty; Sean D McGrath; Lucinda A Fulton; Vincent J Magrini; Tammi L Vickery; Jasreet Hundal; Lisa L Cook; Joshua J Conyers; Gary W Swift; Jerry P Reed; Patricia A Alldredge; Todd Wylie; Jason Walker; Joelle Kalicki; Mark A Watson; Sharon Heath; William D Shannon; Nobish Varghese; Rakesh Nagarajan; Peter Westervelt; Michael H Tomasson; Daniel C Link; Timothy A Graubert; John F DiPersio; Elaine R Mardis; Richard K Wilson
Journal:  N Engl J Med       Date:  2010-11-10       Impact factor: 91.245

5.  Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2.

Authors:  Claudia A Doege; Keiichi Inoue; Toru Yamashita; David B Rhee; Skylar Travis; Ryousuke Fujita; Paolo Guarnieri; Govind Bhagat; William B Vanti; Alan Shih; Ross L Levine; Sara Nik; Emily I Chen; Asa Abeliovich
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

6.  Epigenetic regulation of the stem cell mitogen Fgf-2 by Mbd1 in adult neural stem/progenitor cells.

Authors:  Xuekun Li; Basam Z Barkho; Yuping Luo; Richard D Smrt; Nicholas J Santistevan; Changmei Liu; Tomoko Kuwabara; Fred H Gage; Xinyu Zhao
Journal:  J Biol Chem       Date:  2008-08-08       Impact factor: 5.157

7.  Pur alpha binds to rCGG repeats and modulates repeat-mediated neurodegeneration in a Drosophila model of fragile X tremor/ataxia syndrome.

Authors:  Peng Jin; Ranhui Duan; Abrar Qurashi; Yunlong Qin; Donghua Tian; Tracie C Rosser; Huijie Liu; Yue Feng; Stephen T Warren
Journal:  Neuron       Date:  2007-08-16       Impact factor: 17.173

Review 8.  TET family proteins and their role in stem cell differentiation and transformation.

Authors:  Luisa Cimmino; Omar Abdel-Wahab; Ross L Levine; Iannis Aifantis
Journal:  Cell Stem Cell       Date:  2011-09-02       Impact factor: 24.633

Review 9.  The role of MeCP2 in the brain.

Authors:  Jacky Guy; Hélène Cheval; Jim Selfridge; Adrian Bird
Journal:  Annu Rev Cell Dev Biol       Date:  2011-06-29       Impact factor: 13.827

10.  Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.

Authors:  Wei Xu; Hui Yang; Ying Liu; Ying Yang; Ping Wang; Se-Hee Kim; Shinsuke Ito; Chen Yang; Pu Wang; Meng-Tao Xiao; Li-xia Liu; Wen-qing Jiang; Jing Liu; Jin-ye Zhang; Bin Wang; Stephen Frye; Yi Zhang; Yan-hui Xu; Qun-ying Lei; Kun-Liang Guan; Shi-min Zhao; Yue Xiong
Journal:  Cancer Cell       Date:  2011-01-18       Impact factor: 38.585
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  17 in total

1.  Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.

Authors:  Xi-liang Wang; Shu-hui Song; Yong-Sheng Wu; Yu-Li Li; Ting-ting Chen; Zhi-yuan Huang; Shuo Liu; Thomas L Dunwell; Gerd P Pfeifer; Jim M Dunwell; Raheema Wamaedeesa; Ihsan Ullah; Yinsheng Wang; Song-nian Hu
Journal:  J Exp Bot       Date:  2015-08-13       Impact factor: 6.992

Review 2.  5-Hydroxymethylcytosine: A new player in brain disorders?

Authors:  Ying Cheng; Alison Bernstein; Dahua Chen; Peng Jin
Journal:  Exp Neurol       Date:  2014-05-17       Impact factor: 5.330

3.  Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism.

Authors:  Ligia A Papale; Qi Zhang; Sisi Li; Kailei Chen; Sündüz Keleş; Reid S Alisch
Journal:  Hum Mol Genet       Date:  2015-09-30       Impact factor: 6.150

4.  Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress.

Authors:  Ligia A Papale; Sisi Li; Andy Madrid; Qi Zhang; Li Chen; Pankaj Chopra; Peng Jin; Sündüz Keleş; Reid S Alisch
Journal:  Neurobiol Dis       Date:  2016-08-26       Impact factor: 5.996

5.  Genome-wide alterations in hippocampal 5-hydroxymethylcytosine links plasticity genes to acute stress.

Authors:  Sisi Li; Ligia A Papale; Qi Zhang; Andy Madrid; Li Chen; Pankaj Chopra; Sündüz Keleş; Peng Jin; Reid S Alisch
Journal:  Neurobiol Dis       Date:  2015-11-18       Impact factor: 5.996

6.  Early-life stress links 5-hydroxymethylcytosine to anxiety-related behaviors.

Authors:  Ligia A Papale; Andy Madrid; Sisi Li; Reid S Alisch
Journal:  Epigenetics       Date:  2017-01-27       Impact factor: 4.528

7.  Species-Specific 5 mC and 5 hmC Genomic Landscapes Indicate Epigenetic Contribution to Human Brain Evolution.

Authors:  Andy Madrid; Pankaj Chopra; Reid S Alisch
Journal:  Front Mol Neurosci       Date:  2018-02-14       Impact factor: 5.639

Review 8.  Epigenetic and Neurological Impairments Associated with Early Life Exposure to Persistent Organic Pollutants.

Authors:  Nathalie Grova; Henri Schroeder; Jean-Luc Olivier; Jonathan D Turner
Journal:  Int J Genomics       Date:  2019-01-14       Impact factor: 2.326

9.  Developmental nicotine exposure engenders intergenerational downregulation and aberrant posttranslational modification of cardinal epigenetic factors in the frontal cortices, striata, and hippocampi of adolescent mice.

Authors:  Jordan M Buck; Heidi C O'Neill; Jerry A Stitzel
Journal:  Epigenetics Chromatin       Date:  2020-03-05       Impact factor: 4.954

10.  4mCpred-EL: An Ensemble Learning Framework for Identification of DNA N4-methylcytosine Sites in the Mouse Genome.

Authors:  Balachandran Manavalan; Shaherin Basith; Tae Hwan Shin; Da Yeon Lee; Leyi Wei; Gwang Lee
Journal:  Cells       Date:  2019-10-28       Impact factor: 6.600
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