Regioselective synthesis of 6-substituted-2-amino-5-bromo-4(3H)-pyrimidinones and evaluation of their antiviral activity.

A series of 2-amino-5-bromo-4(3H)-pyrimidinone derivatives bearing different substituents at the C-6 position were synthesized using a highly regioselective lithiation-substitution protocol, and the effect of structural variation at the C-6 position on their antiviral activity in cell culture was evaluated. Although some of the derivatives were found to be active against various virus strains, they were effective only close to their toxicity threshold.

Introduction

The efficacy of interferons in mediating an antiviral response in the virus-infected host has been well established [1]. One of the most important approaches adopted in antiviral therapy is the use of interferon inducers [2], [3]. Agents capable of stimulating interferon production range from viruses and bacterial cell walls to synthetic compounds or biopolymers [4] along with a small group of low-molecular-weight compounds (Fig. 1 ). Some of the compounds which have been reported to induce interferon include N,N-dioctadecyl-N′,N′-bis(2-hydroxyethyl)propanediamine 1 [5], N,N′-dihexadecyl-m-xylylenediamine 2 [6], bis(diethy1amino)fluorenone (3, tilorone) [7], 1,5-bis[[(diethylamino)ethyl]amino]-9,10-anthraquinone 4 [8] and nucleobase derived 9-benzyl-8-hydroxyadenines 5 [9].

Fig. 1

Selected examples of low molecular weight interferon inducers.

Although the compound 2-amino-5-bromo-6-methyl-4(3H)-pyrimidinone 6 (Fig. 1) has been reported to induce interferon in rodents and cats when administered orally or intraperitoneally [10], it has been observed to exhibit toxicity-limiting crystal deposition in the renal papillae of rats upon chronic administration [11]. Subsequent studies have demonstrated that the analogue of ABMP, 6-phenylpyrimidinones does not possess this toxicity and exhibits enhanced interferon-inducing antiviral potency and activity [12]. Further biological evaluation of an initial lead candidate in this second-generation pyrimidinone series, 2-amino-5-bromo-6-phenyl-4(3H)-pyrimidinone 7, revealed an intriguing spectrum of immunomodulatory activity which may be related to its antiviral [13] and antitumour activity [14]. In the present study, a highly regioselective and efficacious protocol to prepare C-6 elaborated 2-amino-5-bromo-4(3H)-pyrimidinones required for the elucidation of the structure–activity relationship (SAR) in this pyrimidinone series has been reported. In addition, a rather elaborated antiviral assay of this series of new compounds along with examination of their cytotoxicity has been carried out.

Chemistry

The compound 2-amino-6-methyl-4(3H)-pyrimidinone 8 was readily synthesized by condensation of the β-ketoester, ethylacetoacetate with guanidine carbonate in ethanol–toluene mixture (Scheme 1 ), obtaining 65% yield following a reported procedure [13].

Scheme 1

Synthesis of 2-amino-6-methyl-4(3H)-pyrimidinone.

In order to append different substituents at the C-6 position of compound 8, our synthesis scheme was commenced by protecting the NH2 group of compound 8 with a tert-butyloxycarbonyl (Boc) group using Et3N as the base in THF at 40 °C to obtain the desired compound 9 with a yield of 47% (Scheme 2 ) [15]. A metallation–alkylation sequence was used for the synthesis of 6-substituted derivatives of compound 8. In order to fully exploit the synthesis potential of this procedure, the reaction of the lithium derivative of compound 8 with several electrophiles was investigated (Scheme 2). All the compounds exhibited satisfactory characteristic data (vide experimental).

Scheme 2

Synthesis of C6-substituted 2-amino-6-methyl-4(3H)-pyrimidinone 13 and 5-bromo derivatives 14.

The anion intermediate 10 was generated in situ by treating compound 9 with n-BuLi (3.1 equiv) in anhydrous THF at 0 °C in an atmosphere of dry nitrogen gas. The treatment of 10 with an appropriate electrophile 11 such as ethyl bromide, n-propyl bromide and n-butyl bromide (1.2 equiv, Table 1 ) at 0 °C led to the substitution at the more nucleophilic C-6 (vinylogous) methyl. Thus, the formation of the corresponding O/N-alkylated product was not observed. Subsequent quenching with a saturated aqueous solution of NH4Cl at 0 °C, afforded 6-substituted derivatives 12a–c (Scheme 2). These derivatives were then treated with trifluoroacetic acid: methylene chloride (2:8 v/v) mixture at room temperature without further purification to obtain compounds 13a–c in good yields (Table 1, entries 1–3).

Table 1

Synthesis of C6-substituted derivatives of 2-amino-4(3H)-pyrimidinone 13 and 2-amino-5-bromo-4(3H)-pyrimidinone 14.

Entry	Electrophile 11	Compound	R	Yield (%)
1.	C2H5Br	13a	n-C3H7	65
2.	n-C3H7Br	13b	n-C4H9	69
3.	n-C4H9Br	13c	n-C5H11	62
4.	BrCH2CH2Ph	13d	n-C3H6Ph	70
5.	(CH3)2CO	13e	CH2C(CH3)2OH	75
6.	4-ClC6H4CHO	13f	4-ClC6H4CH(OH)CH2	58
7.	2-CF3C6H4CHO	13g	2-CF3C6H4 CH(OH)CH2	61
8.	2,4,6-(CH3)3C6H2CHO	13h	2,4,6-(CH3)3C6H2CH <svg xmlns="http://www.w3.org/2000/svg" version="1.0" width="20.666667pt" height="16.000000pt" viewBox="0 0 20.666667 16.000000" preserveAspectRatio="xMidYMid meet"><metadata> Created by potrace 1.16, written by Peter Selinger 2001-2019 </metadata><g transform="translate(1.000000,15.000000) scale(0.019444,-0.019444)" fill="currentColor" stroke="none"><path d="M0 440 l0 -40 480 0 480 0 0 40 0 40 -480 0 -480 0 0 -40z M0 280 l0 -40 480 0 480 0 0 40 0 40 -480 0 -480 0 0 -40z"/></g></svg> CH	71
9.	3,4,-(OCH3)2C6H3CHO	13i	3,4-(OCH3)2C6H3CHCH	69
10.	–	14a	n-C3H7	88
11.	–	14b	n-C4H9	82
12.	–	14c	n-C5H11	90
13.	–	14d	n-C3H6Ph	83
14.	–	14e	CH2C(CH3)2OH	92
15.	–	14f	4-ClC6H4CH(OH)CH2	78
16.	–	14g	2-CF3C6H4 CH(OH)CH2	73
17.	–	14h	2,4,6-(CH3)3C6H2CHCH	87
18.	–	14i	3,4-(OCH3)2C6H3CHCH	76

Similarly, compound 9 was subjected to the above-mentioned metallation reaction, followed by quenching with 2-bromoethylbenzene to obtain compound 12d, and subsequent deprotection of 12d produced the desired compound 13d in 70% yield (Table 1). Likewise, reaction of the anionic intermediate 10 with acetone followed by deprotection of the corresponding 12e produced a good yield of compound 13e. To achieve further diversification at the C6-position of compound 8, reactions of the anionic intermediate 10 were performed with a few aldehydes. Thus, the reaction of compound 9 with n-BuLi followed by reaction with 4-chlorobenzaldehyde and 2-trifluoromethylbenzaldehyde and subsequent deprotection of the corresponding intermediates 12f and 12g with TFA produced good yields of compounds 13f and 13g (Table 1, entries 6 and 7). Likewise, reaction of the anionic species 10 with 2,4,6-trimethylbenzaldehyde and 3,4-dimethoxybenzaldehyde and subsequent deprotection with TFA produced good yields of compounds 13h and 13i (Table 1, entries 8 and 9). Evidently, the formation of 13h and 13i products suggests in situ elimination of water from the corresponding carbinols 12h and 12i, under the acid catalyzed conditions used in the deprotection reaction.

The 5-bromo substituted analogues of compound 13a–i, namely, compounds 14a–i, were obtained in good to excellent yields (Table 1, entries 10–18) through the reaction of the respective compounds 13a–i, with bromine in acetic acid at room temperature (Scheme 2).

Biology

The antiviral assays were based on the inhibition of virus-induced cytopathicity in CRFK [Feline corona virus (FIPV) and Feline herpes virus], HEL [herpes simplex virus (HSV) type-1 (KOS), HSV-2 (G), vaccinia virus, vesicular stomatitis virus (VSV), and HSV-1 (TK- KOS ACVR)], Vero (parainfluenza-3, reovirus-1, Sindbis virus B4, Coxsackie B4, and Punta Toro virus), HeLa (VSV, Coxsackie virus B4, and respiratory syncytial virus) and MDCK [(influenza A (H1N1, H3N2) and B virus)] cell cultures. Confluent cell cultures in 96-well microtiter plates were inoculated with 100 cell culture inhibitory dose-50 (CCID50) of virus (1 CCID50 is the virus dose to infect 50% of the cell cultures), along with varying concentrations of the test compounds. Viral cytopathicity was recorded as soon as it reached completion in the control virus-infected cell cultures that were not treated with the test compounds. Table S1 (see Supporting information) shows the activity and cytotoxicity data of compounds 14a–i against various virus strains. The anti-VSV results observed in HeLa cell cultures (Table S1, entry 5) could not be observed in HEL cell cultures (Table S1, entry 4).

Compound 14h (R = 2,4,6-(CH3)3C6H2CHCH) showed activity against the AD-169 (EC50 = 11 μΜ) and Davis strains (EC50 = 8.9 μΜ) of cytomegalovirus in HEL cell cultures, but its activity was close to its toxicity threshold (Table S1, entry 1). Similarly, compound 14h also exhibited activity against varicella-zoster virus (VZV) strains [TK+VZV OKA (EC50 = 2.5 μΜ) and TK−VZV 07-1 (EC50 = 5.3 μΜ)] in HEL cell cultures, which was close to its toxicity threshold (Table S1, entry 2). In CRFK cell cultures, compound 14h presented activity against Feline Herpes Virus at a concentration well below its cellular toxicity threshold (Table S1, entry 3). However, none of the compounds presented any activity against HSV-1, HSV-2, vaccinia virus and VSV in HEL cell cultures (Table S1, entry 4). Compounds 14b, 14c, 14f and 14i possessing, respectively, a n-butyl, n-pentyl, 4-ClC6H4CH(OH)CH2 and 3,4-(OCH3)2C6H3CHCH substituents at C-6 positions showed activity against VSV in HeLa cell cultures with EC50 values of 10, 45, 45 and 45 μM, respectively. Although, compound 14c with an n-pentyl substituent at the C-6 position had presented pronounced antiviral activity (EC50 = 2 μΜ), it was close to its toxicity threshold (Table S1, entry 5). Furthermore, the anti-VSV activity was not observed in HEL cell cultures, in which the toxicity of the compound was also lower. In Vero cell cultures, none of the compounds showed any activity against parainfluenza virus, reovirus-1, Sindbis virus, Coxsackie virus B4 and Punta Toro virus (Table S1, entry 6). In MDCK cell cultures, all the compounds were found to be inactive against influenza virus (Table S1, entry 7).

Conclusions

A new series of 2-amino-5-bromo-4(3H)-pyrimidinone derivatives bearing different substituents at the C-6 position were synthesized from the corresponding 2-amino-6-methyl-4(3H)-pyrimidinones in a synthetically useful manner. The obtained derivatives were evaluated for antiviral activity in a series of cell cultures. Although some of the derivatives were found to be active against various virus strains in different cell cultures, they were effective only close to their toxicity threshold.

Experimental section

General

All liquid reagents were dried/purified using recommended drying agents and/or distilled over 4 Å molecular sieves. 1H NMR (300 MHz) and 13C NMR (75 MHz) spectra were recorded in DMSO-d 6 and CDCl3 on a multinuclear Jeol FT-AL-300 instruments with chemical shifts being reported in parts per million (δ) relative to internal tetramethylsilane (TMS, δ 0.0, 1H NMR or CDCl3, δ 77.0, 13C NMR). Mass spectra were recorded at The Indian Institute of Integrative Medicine (CSIR), Jammu, India, under electron impact at 70 eV on a Bruker Daltonics Esquire 3000 spectrometer. Elemental analysis was performed on FLASH EA 112 (Thermoelectron Corporation) analyzer at the Department of Chemistry, Guru Nanak Dev University, Amritsar, India and the results were presented in percentage (%). IR was recorded on FTIR Shimadzu 8400 Fourier-transform spectrophotometer in the range of 400–4000 cm−1 using KBr. The melting points were determined in open capillaries and were not corrected. For monitoring the progress of a reaction and for comparison purpose, thin layer chromatography was performed on pre-coated aluminium sheets (Merck; 60F254, 0.2 mm) using an appropriate solvent system. The chromatograms were visualized under UV light. For column chromatography silica gel (60–120 mesh) was employed and the eluents were ethyl acetate/hexane mixtures.

General procedure for the synthesis of tert-butyl (4-methyl-6-oxo-1,6-dihydropyrimidin-2-yl) carbamate 9

A mixture of compound 8 (3.99 mmol), Boc2O (4.79 mmol), triethylamine (5.98 mmol), and DMAP (catalytic amount) in THF (20 mL) was stirred at 40 °C for 2 days. The solvent was evaporated and the residue was purified by column chromatography on silica gel using ethyl acetate and hexane as the eluent to obtain the pure compound. The characteristic data of the compound are as follows.

Viscous oil. Rf: 0.4 (Ethyl acetate). Yield: 47%. IR (KBr): ν max 1090, 1615, 1680, 3320 cm−1. 1H NMR (300 MHz, CDCl3, 25 °C): δ 1.48 (s, 12H, 3× CH3), 2.12 (s, 3H, C6–CH3), 5.85 (s, 1H, C5–H), 7.55 (br, 2H, D2O exchangeable, 2× NH). 13C NMR (75 MHz, CDCl3, 25 °C) δ 22.3, 27.5, 84.0, 101.2, 147.4, 153.9, 154.6, and 165.4. Anal. Calcd. for C10H15N3O3: C, 53.32; H, 6.71; N, 18.66; Found: C, 53.21; H, 6.32; N, 18.44. MS: m/z 248 (M++23).

General procedure for the synthesis of C6-substituted derivatives 13

To a suspension of compound 9 (5.0 mmol) in dry THF (50 mL) under a blanket of dry N2, 2.1 N n-BuLi (15.5 mmol) was added drop wise at 0 °C. After the addition, reaction mixture was stirred at room temperature for 0.5 h and quenched at 0 °C with electrophile 11 (7.5 mmol), dissolved in dry THF (10 mL). The reaction was stirred at room temperature for 0.5 h. After completion of reaction, a cold saturated aqueous solution of NH4Cl (30 mL) was introduced at 0 °C. The reaction contents were extracted with ethyl acetate (3 × 25 mL), treated with brine, washed with water (2 × 25 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure to obtain crude compound 12 (60–75%). This compound was further treated with TFA:DCM (2:8) at room temperature for 0.5 h. After completion of reaction, solvent was removed under reduced pressure and reaction residue was neutralized with base. The reaction contents were extracted with ethyl acetate (3 × 20 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure. Required compounds 13 were purified by column chromatography using silica gel-G (230–400 mesh) and mixtures of ethyl acetate/hexane as the eluent. The characteristic data of the compounds are as follows.

2-Amino-6-propylpyrimidin-4(3H)-one (13a)

Brown solid. Rf: 0.4 (methanol:ethyl acetate/20:80). Yield: 65%. M.p. 192–195 °C (methanol/DCM). IR (KBr): ν max 1010, 1313, 1635, 1699, 3353 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 0.99 (t, J = 7.2 Hz, 3H, CH3), 1.62–1.75 (m, 2H, CH2), 2.47 (t, J = 7.5 Hz, 2H, CH2), 4.11 (br, 2H, D2O exchangeable, NH2), 5.62 (s, 1H, CH), 5.84 (br, 1H, D2O exchangeable, NH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 12.7, 19.8, 33.7, 101.5, 153.2, 156.2 and 161.0. Anal. Calcd. for C7H11N3O: C, 54.89; H, 7.24; N, 27.43; Found: C, 54.55; H, 7.00; N, 27.23. MS: m/z 154 (M++1).

2-Amino-6-butylpyrimidin-4(3H)-one (13b)

White crystalline solid. Rf: 0.6 (methanol:ethyl acetate/20:80). Yield: 69%. M.p. 205–207 °C (methanol/DCM). IR (KBr): ν max 1112, 1330, 1655, 1705, 3220 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 0.92 (t, J = 6.9 Hz, 3H, CH3), 1.31–1.39 (m, 2H, CH2), 1.52–1.59 (m, 2H, CH2), 2.40 (t, J = 7.2 Hz, 2H, CH2), 5.62 (s, 1H, CH), 8.25 (br, 2H, D2O exchangeable, NH2). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 11.7, 19.7, 27.1, 30.2, 99.7, 151.6, 155.4 and 159.5. Anal. Calcd. for C8H13N3O: C, 57.46; H, 7.84; N, 25.13; Found: C, 57.32; H, 7.51; N, 24.90. MS: m/z 168 (M++1).

2-Amino-6-pentylpyrimidin-4(3H)-one (13c)

White crystalline solid. Rf: 0.2 (methanol:ethyl acetate/10:90). Yield: 62%. M.p. 150–152 °C (methanol). IR (KBr): ν max 1250, 1630, 1635, 1699, 3244 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 0.89 (t, J = 6.9 Hz, 3H, CH3), 1.28–1.33 (m, 4H, 2× CH2), 1.53–1.65 (m, 2H, CH2), 2.40 (t, J = 7.2 Hz, 2H, CH2), 5.59 (s, 1H, CH), 7.71 (br, 2H, D2O exchangeable, NH2). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 12.0, 20.1, 25.0, 28.9, 32.2, 99.1, 152.8, 154.9 and 161.3. Anal. Calcd. for C9H15N3O: C, 59.64; H, 8.34; N, 23.19; Found: C, 59.23; H, 8.11; N, 22.94. MS: m/z 182 (M++1).

2-Amino-6-phenethylpyrimidin-4(3H)-one (13d)

Brown solid. Rf: 0.4 (methanol:ethyl acetate/20:80). Yield: 70%. M.p. 85–87 °C (DCM). IR (KBr): ν max 1255, 1465, 1625, 1715, 3450 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 2.71 (t, J = 7.2 Hz, 2H, CH2), 2.89 (t, J = 7.2 Hz, 2H, CH2), 5.73 (s, 1H, CH), 7.18–7.33 (m, 5H, ArH), 8.51 (br, 2H, D2O exchangeable, NH2). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 32.8, 34.1, 102.0, 126.5, 128.5, 140.0, 153.3 and 161.5. Anal. Calcd. for C12H13N3O: C, 66.96; H, 6.09; N, 19.52; Found: C, 66.75; H, 5.84; N, 19.19. MS: m/z 216 (M++1).

2-Amino-6-(2-hydroxy-2-methylpropyl)pyrimidin-4(3H)-one (13e)

Brown solid. Rf: 0.5 (methanol:ethyl acetate/10:90). Yield: 75%. M.p. 165–167 °C (methanol/DCM). IR (KBr): ν max 1110, 1245, 1345, 1655, 1702, 3253 cm−1. 1H NMR (300 MHz, CDCl3, 25 °C): δ 1.28 (s, 6H, 2× CH3), 2.59 (s, 2H, CH2), 5.67 (s, 1H, CH), 8.99 (br, 1H, D2O exchangeable, NH). 13C NMR (75 MHz, CDCl3, 25 °C): δ 28.0, 44.1, 68.4, 103.3, 151.6 and 152.0. Anal. Calcd. for C8H13N3O2: C, 52.45; H, 7.15; N, 22.94; Found: C, 52.11; H, 6.91; N, 22.60. MS: m/z 184 (M++1).

2-Amino-6-(2-(4-chlorophenyl)-2-hydroxyethyl)pyrimidin-4(3H)-one (13f)

White solid. Rf: 0.2 (methanol:ethyl acetate/10:90). Yield: 58%. M.p. 206–207 °C (methanol/DCM). IR (KBr): ν max 1067, 1287, 1344, 1615, 1709, 3140, 3644 cm−1. 1H NMR (300 MHz, CDCl3, 25 °C): δ 2.56 (dd, J = 3.6 Hz, 1.8 Hz, 2H, CH2), 4.94–4.98 (m, 1H, CH), 5.56 (s, 1H, CH), 7.29 (d, J = 8.2 Hz, 2H, ArH), 7.40 (d, J = 8.2 Hz, 2H, ArH), 7.89 (br, 2H, D2O exchangeable, NH2). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 42.1, 69.5, 103.1, 127.3, 127.8, 131.4, 143.0, 152.9 and 161.0. Anal. Calcd. for C12H12N3O2Cl: C, 54.25; H, 4.55; N, 15.82; Found: C, 54.10; H, 4.21; N, 15.43. MS: m/z 288 (M++23).

2-Amino-6-(2-hydroxy-2-(2-(trifluoromethyl)phenyl)ethyl)pyrimidin-4(3H)-one (13g)

Brown solid. Rf: 0.5 (methanol:ethyl acetate/20:80). Yield: 61%. M.p. 186–187 °C (methanol/DCM). IR (KBr): ν max 1142, 1224, 1633, 1688, 3332 cm−1. 1H NMR (300 MHz, CDCl3, 25 °C): δ 2.59 (d, J = 8.7 Hz, 2H, CH2), 5.31 (t, J = 4.8 Hz, 1H, CH), 5.47 (s, 1H, CH), 6.57 (br, 1H, D2O exchangeable, NH), 7.39 (t, J = 7.5 Hz, 1H, ArH), 7.58–7.63 (m, 2H, ArH), 7.88 (d, J = 8.1 Hz, 1H, ArH). 13C NMR (75 MHz, CDCl3, 25 °C): δ 44.4, 66.0, 99.8, 123.5, 123.9, 125.7, 126.6, 130.8, 142.4 and 154.0. Anal. Calcd. for C13H12F3N3O2: C, 52.18; H, 4.04; N, 14.04; Found: C, 51.88; H, 3.90; N, 13.76. MS: m/z 322 (M++23).

2-Amino-6-(2,4,6-trimethylstyryl)pyrimidin-4(3H)-one (13h)

Light yellow solid. Rf: 0.7 (methanol:ethyl acetate/10:90). Yield: 71%. M.p. 158–160 °C (methanol/DCM). IR (KBr): ν max 1030, 1210, 1299, 1629, 1710, 3455 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 2.33 (s, 9H, 3× CH3), 5.76 (s, 1H, CH), 6.29 (d, J = 16.5 Hz, 1H, CH), 6.88 (s, 2H, ArH), 7.68 (d, J = 16.5 Hz, 1H, CH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 20.0, 100.6, 126.2, 128.1, 130.9, 134.4, 135.4, 136.6, 153.8 and 163.2. Anal. Calcd. for C15H17N3O: C, 70.56; H, 6.71; N, 16.46; Found: C, 70.23; H, 6.51; N, 16.40. MS: m/z 256 (M++1).

2-Amino-6-(3,4-dimethoxystyryl)pyrimidin-4(3H)-one (13i)

Yellow solid. Rf: 0.4 (methanol:ethyl acetate/10:90). Yield: 69%. M.p. 220–222 °C (methanol). IR (KBr): ν max 1122, 1267, 1356, 1678, 1315, 3467 cm−1. 1H NMR (300 MHz, CDCl3, 25 °C): δ 3.90 (s, 3H, OCH3), 3.92 (s, 3H, OCH3), 5.79 (s, 1H, CH), 6.62 (d, J = 16.2 Hz, 1H, CH), 6.90 (d, J = 8.1 Hz, 1H, ArH), 7.11 (s, 1H, ArH), 7.13 (d, J = 8.7 Hz, 1H, ArH), 7.63 (d, J = 16.2 Hz, 1H, CH), 8.07 (br, 1H, D2O exchangeable, NH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 55.5, 55.6, 100.9, 109.5, 111.8, 121.8, 128.2, 136.1, 149.0, 150.2, 154.3 and 162.3. Anal. Calcd. for C14H15N3O3: C, 61.53; H, 5.53; N, 15.38; Found: C, 61.20; H, 5.32; N, 15.10. MS: m/z 296 (M++23).

General procedure for the synthesis of C5-bromo substituted derivatives 14

To a suspension of compound 13 (1.0 equiv) in glacial acetic acid (10 mL), bromine (1.1 equiv) was added drop wise and reaction mixture was allowed to stir at room temperature for 0.5 h. After completion of reaction (TLC), solvent was removed under reduced pressure. Solid residue was washed with water to obtain required compound. The characteristic data of the compounds are as follows.

2-Amino-5-bromo-6-propylpyrimidin-4(3H)-one (14a)

Light brown solid. Rf: 0.6 (methanol:ethyl acetate/20:80). Yield: 88%. M.p. 200–202 °C (methanol/DCM). IR (KBr): ν max 550, 1120, 1212, 1373, 1695, 1745, 3166 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 0.93 (t, J = 7.2 Hz, 3H, CH3), 1.54–1.66 (m, 2H, CH2), 2.54 (t, J = 7.2 Hz, 2H, CH2), 7.29 (br, 2H, D2O exchangeable, NH2). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 13.3, 20.1, 35.4, 98.9, 152.0 and 157.3. Anal. Calcd. For C7H10BrN3O: C, 36.23; H, 4.34; N, 18.11; Found: C, 36.02; H, 4.22; N, 17.90. MS: m/z 232 and 234 (M++1).

2-Amino-5-bromo-6-butylpyrimidin-4(3H)-one (14b)

Light brown solid. Rf: 0.6 (methanol:ethyl acetate/10:90). Yield: 82%. M.p. 210–212 °C (methanol/DCM). IR (KBr): ν max 523, 1016, 1249, 1346, 1679, 1721, 3264 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 0.89 (t, J = 7.2 Hz, 3H, CH3), 1.26–1.38 (m, 2H, CH2), 1.49–1.59 (m, 2H, CH2), 2.50 (t, J = 7.2 Hz, 2H, CH2), 6.62 (br, 2H, D2O exchangeable, NH2), 11.18 (br, 1H, D2O exchangeable, NH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 14.1, 22.2, 29.2, 34.0, 99.2, 152.6 and 158.0. Anal. Calcd. for C8H12BrN3O: C, 39.04; H, 4.91; N, 17.07; Found: C, 38.82; H, 4.70; N, 16.90. MS: m/z 246 and 247 (M++1).

2-Amino-5-bromo-6-pentylpyrimidin-4(3H)-one (14c)

White solid. Rf: 0.5 (methanol:ethyl acetate/10:90). Yield: 90%. M.p. 195–197 °C (methanol). IR (KBr): ν max 610, 1120, 1255, 1344, 1677, 1712, 3453 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 0.85 (t, J = 6.0 Hz, 3H, CH3), 1.26–1.30 (m, 4H, 2× CH2), 2.04–2.15 (m, 2H, CH2), 6.81 (br, 1H, D2O exchangeable, NH), 11.05 (br, 2H, D2O exchangeable, NH2). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 13.8, 21.8, 26.6, 30.8, 35.9, 97.3, 153.6 and 158.5. Anal. Calcd. for C9H14BrN3O: C, 41.55; H, 5.42; N, 16.15; Found: C, 41.34; H, 5.33; N, 15.90. MS: m/z 260 and 262 (M++1).

2-Amino-5-bromo-6-phenethylpyrimidin-4(3H)-one (14d)

White solid. Rf: 0.7 (methanol:ethyl acetate/20:80). Yield: 83%. M.p. 220–222 °C (methanol/DCM). IR (KBr): ν max 615, 1130, 1278, 1369, 1699, 1755, 3283 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 2.82 (d, J = 8.4 Hz, 4H, 2× CH2), 6.71 (br, 2H, D2O exchangeable, NH2), 7.21–7.31 (m, 5H, ArH), 11.25 (br, 1H, D2O exchangeable, NH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 32.8, 126.0, 128.2, 128.4, 141.0 and 154.2. Anal. Calcd. for C12H12BrN3O: C, 49.00; H, 4.11; N, 14.29; Found: C, 48.78; H, 3.90; N, 14.10. MS: m/z 316 and 318 (M++23).

2-Amino-5-bromo-6-(2-hydroxy-2-methylpropyl)pyrimidin-4(3H)-one (14e)

White solid. Rf: 0.7 (methanol:ethyl acetate/10:90). Yield: 92%. M.p. 180–182 °C (methanol/DCM). IR (KBr): ν max 597, 1123, 1345, 1395, 1695, 1725, 3353 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 1.14 (s, 6H, 2× CH3), 2.70 (s, 2H, CH2), 5.29 (br, 1H, D2O exchangeable, OH), 6.75 (br, 2H, D2O exchangeable, NH2), 11.35 (br, 1H, D2O exchangeable, NH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 29.4, 45.4, 100.9, 151.4, 153.2 and 157.4. Anal. Calcd. for C8H12BrN3O2: C, 36.66; H, 4.61; N, 16.03; Found: C, 36.45; H, 4.33; N, 15.78. MS: m/z 262 and 264 (M++1).

2-Amino-5-bromo-6-(2-(4-chlorophenyl)-2-hydroxyethyl)pyrimidin-4(3H)-one (14f)

Light yellowish solid. Rf: 0.3 (methanol:ethyl acetate/10:90). Yield: 78%. M.p. 255–257 °C (methanol). IR (KBr): ν max 598, 710, 1066, 1343, 1685, 1729, 3183 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 2.78–2.93 (m, 2H, CH2), 3.87 (br, 1H, D2O exchangeable, OH), 5.43–5.44 (m, 1H, CH), 6.72 (br, 2H, D2O exchangeable, NH2), 7.35–7.52 (m, 4H, ArH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 40.1, 67.5, 103.7, 126.3, 127.8, 132.4, 144.0, 156.9 and 161.9. Anal. Calcd. for C12H11BrClN3O2: C, 41.83; H, 3.22; N, 12.19; Found: C, 41.54; H, 3.11; N, 11.90. MS: m/z 344 and 346 (M++1).

2-Amino-5-bromo-6-(2-hydroxy-2-(2-(trifluoromethyl)phenyl)ethyl)pyrimidin-4(3H)-one (14g)

White solid. Rf: 0.7 (methanol:ethyl acetate/20:80). Yield: 73%. M.p. 177–179 °C (methanol/DCM). IR (KBr): ν max 615, 1210, 1342, 1513, 1735, 3443 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 2.75 (dd, J = 13.8 Hz, 9.3 Hz, 1H, CH), 2.96 (dd, J = 13.8 Hz, 9.3 Hz, 1H, CH), 3.90 (br, 1H, D2O exchangeable, OH), 5.40 (d, J = 7.2 Hz, 1H, CH), 6.76 (br, 2H, D2O exchangeable, NH2), 7.48 (t, J = 7.2 Hz, 1H, ArH), 7.64–7.74 (m, 2H, ArH), 7.89 (d, J = 7.5 Hz, 1H, ArH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 39.7, 66.9, 99.7, 123.6, 124.5, 126.5, 130.0, 134.6, 154.0, 155.6 and 162.4. Anal. Calcd. for C13H11BrF3N3O2: C, 41.29; H, 2.93; N, 11.11; Found: C, 40.99; H, 2.56; N, 10.87. MS: m/z 378 and 380 (M++1).

2-Amino-5-bromo-6-(2,4,6-trimethylstyryl)pyrimidin-4(3H)-one (14h)

Light yellow solid. Rf: 0.2 (ethyl acetate). Yield: 87%. M.p. 178–180 °C (methanol/DCM). IR (KBr): ν max 611, 1030, 1262, 1364, 1653, 1679, 3433 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 2.23 (s, 3H, CH3), 2.31 (s, 6H, 2× CH3), 6.85–6.93 (m, 3H, CH & ArH), 7.76 (d, J = 16.2 Hz, 1H, CH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 20.7, 21.0, 98.3, 128.2, 129.2, 131.8, 136.2, 137.3, 153.3 and 158.9. Anal. Calcd. for C15H16BrN3O: C, 53.91; H, 4.83; N, 12.57; Found: C, 53.67; H, 4.45; N, 12.19. MS: m/z 334 and 336 (M++1).

2-Amino-5-bromo-6-(3,4-dimethoxystyryl)pyrimidin-4(3H)-one (14i)

Yellow solid. Rf: 0.7 (methanol:ethyl acetate/10:90). Yield: 76%. M.p. 211–213 °C (methanol/DCM). IR (KBr): ν max 613, 1120, 1255, 1353, 1655, 1711, 3329 cm−1. 1H NMR (300 MHz, DMSO-d 6, 25 °C): δ 3.86 (s, 3H, OCH3), 3.90 (s, 3H, OCH3), 5.88 (d, J = 11.4 Hz, 1H, CH), 6.18 (d, J = 11.4 Hz, 1H, CH), 6.77 (br, 2H, D2O exchangeable, NH2), 7.11 (d, J = 8.1 Hz, 2H, ArH), 8.06 (s, 1H, ArH). 13C NMR (75 MHz, DMSO-d 6, 25 °C): δ 51.5, 56.0, 56.2, 104.5, 121.8, 128.2, 129.2, 136.2, 148.6, 151.2, 155.3 and 164.7. Anal. Calcd. for C14H14BrN3O3: C, 47.74; H, 4.01; N, 11.93; Found: C, 47.54; H, 3.91; N, 11.70. MS: m/z 350 and 352 (M−−1).

Antiviral activity assays

The compounds were evaluated against the following viruses: herpes simplex virus type 1 (HSV-1) strain KOS, thymidine kinase-deficient (TK−) HSV-1 KOS strain resistant to ACV (ACVr), herpes simplex virus type 2 (HSV-2) strains Lyons and G, cytomegalovirus (CMV) strains AD-169 and Davis, varicella-zoster virus (VZV) strains OKA and 07-1, vaccinia virus Lederle strain, respiratory syncytial virus (RSV) strain Long, vesicular stomatitis virus (VSV), Coxsackie B4, Parainfluenza 3, Influenza virus A (subtypes H1N1, H3N2), influenza virus B, Reovirus-1, Sindbis and Punta Toro virus. The antiviral assays were based on inhibition of virus-induced cytopathicity or plaque formation in human embryonic lung (HEL) fibroblasts, African green monkey cells (Vero), human cervix carcinoma epithelial cells (HeLa) or Madin–Darby canine kidney cells (MDCK). Confluent cell cultures in microtiter 96-well plates were inoculated with 100 CCID50 of virus (1 CCID50 being the virus dose to infect 50% of the cell cultures) or 100 or 20 plaque forming units (PFU) (for CMV or VZV, respectively) in the presence of varying concentrations of the test compounds. Viral cytopathicity or plaque formation was recorded as soon as it reached completion in the control virus-infected cell cultures that were not treated with the test compounds. Antiviral activity was expressed as the EC50 or compound concentration required to reduce virus-induced cytopathogenicity or viral plaque formation by 50%.